Wall clock time and date at job start Tue Mar 31 2020 12:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46902 * 111.00001 * 2 1 4 4 C 1.46901 * 111.00066 * 123.95519 * 2 1 3 5 5 C 1.52998 * 109.47050 * 75.67196 * 4 2 1 6 6 H 1.09000 * 109.70730 * 292.39954 * 5 4 2 7 7 C 1.53627 * 109.66521 * 52.99376 * 5 4 2 8 8 C 1.53036 * 109.24348 * 174.54570 * 7 5 4 9 9 C 1.53039 * 109.53902 * 298.51049 * 8 7 5 10 10 C 1.53188 * 109.31123 * 61.36565 * 9 8 7 11 11 N 1.46924 * 108.77691 * 305.36160 * 10 9 8 12 12 S 1.65597 * 120.63555 * 233.58699 * 11 10 9 13 13 O 1.42102 * 104.27660 * 343.83533 * 12 11 10 14 14 O 1.42101 * 104.27902 * 215.98019 * 12 11 10 15 15 C 1.81400 * 104.45066 * 99.90466 * 12 11 10 16 16 C 1.52995 * 109.47091 * 180.02562 * 15 12 11 17 17 C 1.53004 * 109.47219 * 180.02562 * 16 15 12 18 18 C 1.50696 * 109.47237 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00299 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00050 * 179.72585 * 18 17 16 21 21 N 1.31520 * 119.99720 * 0.27277 * 20 18 17 22 22 Si 1.86800 * 120.00206 * 180.27520 * 20 18 17 23 23 H 1.48494 * 109.46900 * 90.00084 * 22 20 18 24 24 H 1.48498 * 109.47134 * 209.99889 * 22 20 18 25 25 H 1.48494 * 109.47093 * 329.99561 * 22 20 18 26 26 H 1.08998 * 109.46840 * 290.76561 * 1 2 3 27 27 H 1.08997 * 109.46977 * 50.76121 * 1 2 3 28 28 H 1.09000 * 109.47055 * 170.76189 * 1 2 3 29 29 H 1.09002 * 109.46929 * 183.95519 * 3 2 1 30 30 H 1.09001 * 109.47194 * 303.95367 * 3 2 1 31 31 H 1.08992 * 109.47075 * 63.95581 * 3 2 1 32 32 H 1.08998 * 109.47219 * 315.67328 * 4 2 1 33 33 H 1.09001 * 109.46800 * 195.67318 * 4 2 1 34 34 H 1.09002 * 109.63471 * 54.55448 * 7 5 4 35 35 H 1.08999 * 109.45848 * 294.43419 * 7 5 4 36 36 H 1.09002 * 109.45967 * 178.49342 * 8 7 5 37 37 H 1.08996 * 109.44856 * 58.52399 * 8 7 5 38 38 H 1.08998 * 109.50196 * 301.41440 * 9 8 7 39 39 H 1.09004 * 109.49653 * 181.31401 * 9 8 7 40 40 H 1.09001 * 109.58681 * 185.57752 * 10 9 8 41 41 H 1.08998 * 109.59108 * 65.15498 * 10 9 8 42 42 H 1.09001 * 109.46900 * 60.00012 * 15 12 11 43 43 H 1.09000 * 109.47120 * 300.00216 * 15 12 11 44 44 H 1.09001 * 109.47619 * 59.99986 * 16 15 12 45 45 H 1.09000 * 109.46934 * 299.99863 * 16 15 12 46 46 H 1.09001 * 109.46888 * 59.99475 * 17 16 15 47 47 H 1.09000 * 109.47004 * 299.99757 * 17 16 15 48 48 H 0.97005 * 119.99834 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.8450 -2.2627 0.8580 6 1 0.7885 -2.5305 0.8488 7 6 2.4779 -2.6010 -0.5004 8 6 2.4439 -4.1167 -0.7091 9 6 3.2621 -4.8028 0.3873 10 6 2.6430 -4.4888 1.7529 11 7 2.5387 -3.0308 1.9009 12 16 3.1846 -2.2683 3.2214 13 8 3.4040 -3.3145 4.1576 14 8 2.2715 -1.2156 3.4997 15 6 4.7647 -1.6009 2.6308 16 6 5.4664 -0.8647 3.7738 17 6 6.7988 -0.3013 3.2755 18 6 7.4897 0.4244 4.4012 19 1 7.0248 0.4787 5.3745 20 6 8.7177 1.0146 4.1899 21 7 9.2836 0.9488 3.0045 22 14 9.5777 1.9075 5.5872 23 1 10.4417 0.9530 6.3271 24 1 10.4123 3.0044 5.0344 25 1 8.5629 2.4751 6.5108 26 1 -0.3633 0.3644 0.9609 27 1 -0.3633 0.6500 -0.7959 28 1 -0.3633 -1.0143 -0.1650 29 1 3.0828 1.3432 -0.0709 30 1 1.5899 1.9164 -0.8524 31 1 1.7045 1.8723 0.9232 32 1 1.4394 -0.5070 2.0385 33 1 3.0495 -0.5271 1.2798 34 1 3.5111 -2.2542 -0.5197 35 1 1.9150 -2.1116 -1.2952 36 1 2.8679 -4.3587 -1.6837 37 1 1.4124 -4.4662 -0.6649 38 1 4.2879 -4.4353 0.3597 39 1 3.2568 -5.8806 0.2246 40 1 3.2768 -4.8918 2.5428 41 1 1.6502 -4.9344 1.8153 42 1 4.5821 -0.9078 1.8096 43 1 5.3969 -2.4179 2.2830 44 1 5.6490 -1.5581 4.5948 45 1 4.8343 -0.0478 4.1219 46 1 6.6158 0.3922 2.4547 47 1 7.4311 -1.1180 2.9271 48 1 10.1478 1.3638 2.8559 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595346966.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:11 Heat of formation + Delta-G solvation = -94.296026 kcal Electronic energy + Delta-G solvation = -26774.739647 eV Core-core repulsion = 23183.748984 eV Total energy + Delta-G solvation = -3590.990662 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.20597 -38.54251 -37.58032 -37.12433 -36.52665 -34.21934 -33.50569 -32.49631 -29.74835 -28.44633 -27.97377 -25.79973 -24.92624 -24.14893 -22.60196 -21.93371 -21.18365 -19.91619 -18.73763 -18.30593 -17.75758 -17.24055 -16.52218 -16.41540 -16.28982 -15.89659 -15.76862 -15.36370 -15.22850 -14.94874 -14.62114 -14.53595 -14.33504 -14.13993 -13.74004 -13.34871 -13.29830 -13.17244 -13.07328 -12.99395 -12.85960 -12.77362 -12.69154 -12.52178 -12.50572 -12.37041 -12.18739 -11.89322 -11.76941 -11.66190 -11.40579 -11.37112 -11.32058 -11.02049 -10.59687 -9.89787 -9.25914 -8.24453 -6.35960 -0.83273 1.38863 1.39664 1.51013 1.56775 2.38170 2.68925 2.88614 3.06635 3.09100 3.53253 3.63797 3.75040 3.93620 3.99815 4.11078 4.25399 4.28172 4.33554 4.35534 4.45493 4.51300 4.55027 4.58714 4.71391 4.73896 4.82575 4.86859 4.89729 5.00222 5.00775 5.03597 5.06487 5.08223 5.11804 5.30010 5.32244 5.41393 5.41637 5.57853 5.58028 5.70223 5.76216 5.96953 6.07568 6.16679 6.79050 7.33539 8.87064 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.014136 B = 0.003854 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.316336 B = 7262.846627 C = 7980.096326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.536 5.536 3 C 0.019 3.981 4 C -0.007 4.007 5 C 0.166 3.834 6 H 0.091 0.909 7 C -0.115 4.115 8 C -0.115 4.115 9 C -0.136 4.136 10 C 0.112 3.888 11 N -0.992 5.992 12 S 2.614 3.386 13 O -0.987 6.987 14 O -0.978 6.978 15 C -0.613 4.613 16 C -0.103 4.103 17 C 0.034 3.966 18 C -0.553 4.553 19 H 0.060 0.940 20 C 0.005 3.995 21 N -0.929 5.929 22 Si 0.963 3.037 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.265 1.265 26 H 0.020 0.980 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.021 0.979 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.138 0.862 43 H 0.141 0.859 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.002 0.998 47 H 0.002 0.998 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.628 -9.055 -10.716 23.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.261 5.261 3 C -0.129 4.129 4 C -0.136 4.136 5 C 0.060 3.940 6 H 0.109 0.891 7 C -0.154 4.154 8 C -0.152 4.152 9 C -0.175 4.175 10 C -0.012 4.012 11 N -0.832 5.832 12 S 2.712 3.288 13 O -0.978 6.978 14 O -0.968 6.968 15 C -0.743 4.743 16 C -0.142 4.142 17 C -0.004 4.004 18 C -0.591 4.591 19 H 0.078 0.922 20 C -0.194 4.194 21 N -0.569 5.569 22 Si 0.787 3.213 23 H -0.197 1.197 24 H -0.204 1.204 25 H -0.189 1.189 26 H 0.039 0.961 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.039 0.961 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.112 0.888 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.156 0.844 43 H 0.159 0.841 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.020 0.980 47 H 0.020 0.980 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.754 -9.206 -10.361 23.320 hybrid contribution 1.164 1.186 0.943 1.911 sum -17.590 -8.019 -9.418 21.504 Atomic orbital electron populations 1.22568 0.86166 1.03502 1.00750 1.61902 1.09013 1.13786 1.41354 1.22480 1.00769 0.88507 1.01163 1.23428 1.01360 0.94080 0.94780 1.21091 0.97071 0.88290 0.87559 0.89135 1.21871 1.01067 0.96652 0.95776 1.21504 1.00862 0.94289 0.98563 1.21974 0.99597 1.02039 0.93913 1.21694 1.03011 0.77408 0.99112 1.57651 1.70070 1.16059 1.39428 1.04747 0.76516 0.73606 0.73961 1.93498 1.87257 1.56229 1.60773 1.93510 1.60444 1.58665 1.84132 1.30744 1.21243 1.12478 1.09882 1.21294 0.98592 0.98996 0.95309 1.18930 0.91053 0.94833 0.95613 1.21710 1.04542 1.34929 0.97939 0.92212 1.25926 0.98059 0.97019 0.98372 1.70077 1.17499 1.45706 1.23589 0.85480 0.78511 0.78286 0.79024 1.19663 1.20429 1.18902 0.96100 0.89737 0.90138 0.91981 0.89154 0.96075 0.89811 0.91978 0.92755 0.89067 0.90802 0.90816 0.92173 0.88756 0.89480 0.89363 0.84391 0.84051 0.91654 0.91660 0.97993 0.97998 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.41 127.69 1.20 1.50 16 2 N -0.54 -11.14 4.03 -948.84 -3.82 -14.96 16 3 C 0.02 0.40 9.51 127.69 1.21 1.61 16 4 C -0.01 -0.18 3.06 86.30 0.26 0.09 16 5 C 0.17 3.39 2.89 45.12 0.13 3.52 16 6 H 0.09 1.63 7.36 -2.39 -0.02 1.61 16 7 C -0.11 -1.99 5.05 30.82 0.16 -1.83 16 8 C -0.11 -1.56 5.88 30.62 0.18 -1.38 16 9 C -0.14 -2.03 6.08 30.67 0.19 -1.84 16 10 C 0.11 2.09 6.37 86.36 0.55 2.65 16 11 N -0.99 -22.96 3.21 -490.02 -1.57 -24.53 16 12 S 2.61 80.56 4.82 -56.49 -0.27 80.29 16 13 O -0.99 -35.42 16.43 -127.65 -2.10 -37.52 16 14 O -0.98 -33.85 14.01 -127.65 -1.79 -35.64 16 15 C -0.61 -19.97 5.90 71.98 0.42 -19.55 16 16 C -0.10 -4.33 5.16 30.59 0.16 -4.17 16 17 C 0.03 1.78 4.97 29.85 0.15 1.93 16 18 C -0.55 -31.80 9.11 25.60 0.23 -31.56 16 19 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 20 C 0.00 0.27 5.46 84.65 0.46 0.73 16 21 N -0.93 -55.96 13.29 21.45 0.28 -55.67 16 22 Si 0.96 44.35 29.54 68.60 2.03 46.38 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 25 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 26 H 0.02 0.38 7.97 -2.39 -0.02 0.36 16 27 H 0.08 1.10 8.03 -2.39 -0.02 1.08 16 28 H 0.08 1.11 7.25 -2.39 -0.02 1.09 16 29 H 0.06 1.41 8.07 -2.39 -0.02 1.39 16 30 H 0.09 1.48 8.06 -2.39 -0.02 1.46 16 31 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.08 2.43 5.36 -2.39 -0.01 2.42 16 33 H 0.06 1.66 4.61 -2.39 -0.01 1.65 16 34 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.09 1.48 7.66 -2.39 -0.02 1.46 16 36 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.09 1.80 6.82 -2.39 -0.02 1.78 16 41 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.14 4.17 5.84 -2.39 -0.01 4.15 16 43 H 0.14 4.17 8.14 -2.39 -0.02 4.15 16 44 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 45 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 46 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 47 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 48 H 0.27 14.96 8.31 -92.70 -0.77 14.19 16 Total: -1.00 -71.01 376.27 -1.02 -72.02 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.91 Total: 17.94 kcal Atomic # 6 Polarization: -53.61 SS G_CDS: 5.31 Total: -48.30 kcal Atomic # 7 Polarization: -90.06 SS G_CDS: -5.11 Total: -95.16 kcal Atomic # 8 Polarization: -69.28 SS G_CDS: -3.88 Total: -73.16 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: 80.56 SS G_CDS: -0.27 Total: 80.29 kcal Total: -71.01 -1.02 -72.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595346966.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.273 kcal (2) G-P(sol) polarization free energy of solvation -71.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds