Wall clock time and date at job start Tue Mar 31 2020 12:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47943 * 111.00030 * 2 1 4 4 C 1.53914 * 113.32854 * 192.17890 * 3 2 1 5 5 C 1.50532 * 112.93638 * 317.75855 * 4 3 2 6 6 C 1.54516 * 108.85888 * 91.76040 * 5 4 3 7 7 C 1.45870 * 111.67901 * 282.74448 * 6 5 4 8 8 H 1.09003 * 108.84663 * 300.77523 * 7 6 5 9 9 C 1.53006 * 108.84437 * 182.30945 * 7 6 5 10 10 N 1.46500 * 109.46952 * 173.48274 * 9 7 6 11 11 S 1.65606 * 119.99825 * 164.99981 * 10 9 7 12 12 O 1.42097 * 104.27560 * 308.93171 * 11 10 9 13 13 O 1.42091 * 104.27561 * 181.06907 * 11 10 9 14 14 C 1.81407 * 104.44700 * 64.99932 * 11 10 9 15 15 C 1.52996 * 109.46799 * 180.02562 * 14 11 10 16 16 C 1.52998 * 109.46929 * 180.02562 * 15 14 11 17 17 C 1.50706 * 109.47348 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99302 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00436 * 179.72505 * 17 16 15 20 20 N 1.31514 * 120.00481 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99745 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47209 * 90.00365 * 21 19 17 23 23 H 1.48506 * 109.47294 * 210.00213 * 21 19 17 24 24 H 1.48501 * 109.47275 * 330.00116 * 21 19 17 25 25 C 1.44394 * 111.04911 * 232.66017 * 2 1 3 26 26 H 1.08999 * 109.47101 * 56.04420 * 1 2 3 27 27 H 1.09003 * 109.47256 * 176.05048 * 1 2 3 28 28 H 1.09003 * 109.47264 * 296.04502 * 1 2 3 29 29 H 1.09002 * 108.71240 * 71.18389 * 3 2 1 30 30 H 1.09004 * 108.71292 * 313.17068 * 3 2 1 31 31 H 1.09007 * 108.79090 * 196.86755 * 4 3 2 32 32 H 1.08996 * 108.70409 * 78.59004 * 4 3 2 33 33 H 1.09005 * 109.57347 * 331.94476 * 5 4 3 34 34 H 1.09000 * 109.67919 * 211.64162 * 5 4 3 35 35 H 1.08994 * 109.04028 * 162.17535 * 6 5 4 36 36 H 1.08998 * 109.03305 * 43.30577 * 6 5 4 37 37 H 1.08995 * 109.47044 * 53.48718 * 9 7 6 38 38 H 1.08998 * 109.46878 * 293.48100 * 9 7 6 39 39 H 0.96998 * 120.00233 * 345.00100 * 10 9 7 40 40 H 1.09000 * 109.46876 * 60.00006 * 14 11 10 41 41 H 1.08994 * 109.47253 * 300.00070 * 14 11 10 42 42 H 1.09000 * 109.47441 * 60.00303 * 15 14 11 43 43 H 1.09002 * 109.47087 * 299.99749 * 15 14 11 44 44 H 1.09001 * 109.47671 * 60.00109 * 16 15 14 45 45 H 1.08998 * 109.47454 * 300.00107 * 16 15 14 46 46 H 0.96995 * 120.00207 * 179.97438 * 20 19 17 47 47 H 1.09000 * 109.79343 * 101.70591 * 25 2 1 48 48 H 1.08998 * 109.64095 * 341.08894 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3812 0.0000 4 6 3.5074 1.4551 -0.2982 5 6 4.2989 0.3906 0.4134 6 6 4.4180 -0.8435 -0.5086 7 6 3.1841 -1.6214 -0.5298 8 1 2.9574 -1.9498 0.4845 9 6 3.3918 -2.8536 -1.4128 10 7 2.2170 -3.7240 -1.3206 11 16 1.9903 -4.9295 -2.4332 12 8 2.1248 -4.2774 -3.6886 13 8 0.7632 -5.5343 -2.0494 14 6 3.3752 -6.0678 -2.1557 15 6 3.2772 -7.2386 -3.1357 16 6 4.4449 -8.1990 -2.9012 17 6 4.3481 -9.3526 -3.8662 18 1 3.5347 -9.3965 -4.5754 19 6 5.3005 -10.3493 -3.8470 20 7 5.2163 -11.3557 -4.6894 21 14 6.7115 -10.2694 -2.6254 22 1 6.3202 -10.9617 -1.3712 23 1 7.9065 -10.9335 -3.2053 24 1 7.0295 -8.8495 -2.3286 25 6 1.9876 -0.8174 -1.0714 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3634 -1.0252 -0.0708 28 1 -0.3634 0.4512 0.9233 29 1 1.8136 1.8270 0.9772 30 1 1.4651 1.9608 -0.7530 31 1 3.8785 2.4329 0.0090 32 1 3.6571 1.3450 -1.3721 33 1 3.7881 0.1103 1.3347 34 1 5.2940 0.7685 0.6482 35 1 5.2310 -1.4762 -0.1527 36 1 4.6456 -0.5102 -1.5211 37 1 4.2742 -3.3974 -1.0758 38 1 3.5313 -2.5399 -2.4473 39 1 1.5720 -3.5943 -0.6078 40 1 3.3364 -6.4448 -1.1336 41 1 4.3161 -5.5406 -2.3130 42 1 3.3163 -6.8613 -4.1576 43 1 2.3363 -7.7660 -2.9788 44 1 4.4055 -8.5764 -1.8794 45 1 5.3860 -7.6720 -3.0578 46 1 5.8866 -12.0566 -4.6762 47 1 2.3144 -0.1825 -1.8950 48 1 1.2128 -1.5008 -1.4188 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599416968.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:37 Heat of formation + Delta-G solvation = -89.850671 kcal Electronic energy + Delta-G solvation = -25374.292646 eV Core-core repulsion = 21783.494749 eV Total energy + Delta-G solvation = -3590.797897 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.88401 -36.96805 -36.23954 -35.77893 -34.80923 -34.63875 -32.21701 -32.15968 -28.38100 -28.13495 -26.75291 -24.99939 -23.60693 -23.13388 -20.82421 -20.42336 -20.05415 -19.17461 -17.48716 -16.94766 -16.56957 -16.54934 -16.07073 -15.76118 -15.34336 -15.13126 -14.33244 -14.22923 -14.12010 -13.92608 -13.81072 -13.48080 -13.34327 -12.91123 -12.77524 -12.35499 -12.24551 -12.13737 -11.98204 -11.92308 -11.84696 -11.71691 -11.56194 -11.36721 -11.09172 -10.99214 -10.95068 -10.90306 -10.76203 -10.65333 -10.09601 -9.91643 -9.81102 -9.37415 -9.24633 -8.58877 -8.56680 -6.08445 -4.07752 0.41476 2.82089 3.26612 3.34129 3.36081 3.50907 3.89605 4.23095 4.36468 4.40255 4.45240 4.51791 4.63757 4.69915 4.87279 4.95689 5.02655 5.08536 5.08829 5.16571 5.20041 5.25365 5.30591 5.33007 5.40479 5.43871 5.47283 5.56571 5.60938 5.65106 5.74715 5.76801 5.87048 5.98690 6.01463 6.13556 6.14694 6.26853 6.67019 6.71885 6.85553 6.90073 7.12685 7.26634 7.71026 8.47637 8.95979 9.52654 11.04857 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.022104 B = 0.002659 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.427844 B =10526.983156 C =11408.461552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.552 5.552 3 C 0.062 3.938 4 C -0.122 4.122 5 C -0.109 4.109 6 C -0.115 4.115 7 C -0.084 4.084 8 H 0.087 0.913 9 C 0.114 3.886 10 N -1.124 6.124 11 S 2.603 3.397 12 O -0.961 6.961 13 O -0.962 6.962 14 C -0.616 4.616 15 C -0.098 4.098 16 C -0.005 4.005 17 C -0.527 4.527 18 H 0.074 0.926 19 C 0.067 3.933 20 N -0.900 5.900 21 Si 0.881 3.119 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.266 1.266 25 C 0.062 3.938 26 H 0.024 0.976 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.031 0.969 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.415 0.585 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.016 0.984 45 H 0.020 0.980 46 H 0.264 0.736 47 H 0.046 0.954 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.966 27.659 12.761 30.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.276 5.276 3 C -0.065 4.065 4 C -0.160 4.160 5 C -0.147 4.147 6 C -0.154 4.154 7 C -0.105 4.105 8 H 0.105 0.895 9 C -0.013 4.013 10 N -0.882 5.882 11 S 2.698 3.302 12 O -0.951 6.951 13 O -0.953 6.953 14 C -0.747 4.747 15 C -0.137 4.137 16 C -0.043 4.043 17 C -0.565 4.565 18 H 0.093 0.907 19 C -0.134 4.134 20 N -0.539 5.539 21 Si 0.708 3.292 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.190 1.190 25 C -0.067 4.067 26 H 0.043 0.957 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.049 0.951 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.249 0.751 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.034 0.966 45 H 0.038 0.962 46 H 0.074 0.926 47 H 0.064 0.936 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.316 27.256 12.326 30.224 hybrid contribution 0.869 0.156 0.535 1.033 sum -3.447 27.412 12.862 30.475 Atomic orbital electron populations 1.22433 0.86821 1.02128 1.00680 1.60699 1.07363 1.12544 1.47036 1.22404 0.94915 0.88332 1.00880 1.21412 0.94025 0.99591 1.00932 1.21247 0.99415 0.94785 0.99267 1.20594 0.97238 0.97265 1.00258 1.20263 0.95531 0.94185 1.00528 0.89466 1.21500 0.87126 0.91253 1.01433 1.55718 1.34799 1.48946 1.48785 1.05198 0.76453 0.74661 0.73870 1.93572 1.87274 1.72939 1.41292 1.93584 1.41203 1.77581 1.82901 1.30594 1.19251 1.14391 1.10475 1.21309 1.02822 0.93362 0.96224 1.19533 0.93013 0.94511 0.97273 1.21137 1.11965 1.04910 1.18474 0.90738 1.25028 0.97787 0.95103 0.95531 1.69909 1.35738 1.11278 1.36975 0.86770 0.82190 0.78619 0.81637 1.20222 1.21282 1.19047 1.21940 0.97255 0.95746 0.91738 0.95704 0.91115 0.91503 0.91166 0.95116 0.91533 0.92167 0.90790 0.92084 0.91556 0.92010 0.91456 0.90226 0.75057 0.85270 0.85537 0.90983 0.91009 0.96605 0.96183 0.92626 0.93553 0.90645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.49 60.06 0.57 0.76 16 2 N -0.55 -4.22 4.25 -242.84 -1.03 -5.26 16 3 C 0.06 0.41 5.44 -2.77 -0.02 0.40 16 4 C -0.12 -0.73 5.28 -27.49 -0.15 -0.88 16 5 C -0.11 -0.68 5.63 -27.17 -0.15 -0.83 16 6 C -0.12 -0.76 4.51 -29.31 -0.13 -0.89 16 7 C -0.08 -0.63 1.85 -93.47 -0.17 -0.80 16 8 H 0.09 0.67 8.08 -51.93 -0.42 0.25 16 9 C 0.11 0.96 5.43 -4.04 -0.02 0.94 16 10 N -1.12 -10.93 5.08 -10.61 -0.05 -10.99 16 11 S 2.60 35.92 5.46 -107.50 -0.59 35.34 16 12 O -0.96 -16.15 17.50 -57.54 -1.01 -17.16 16 13 O -0.96 -16.28 18.08 -57.54 -1.04 -17.32 16 14 C -0.62 -8.70 6.07 37.16 0.23 -8.48 16 15 C -0.10 -1.90 5.16 -26.73 -0.14 -2.04 16 16 C 0.00 -0.11 4.04 -27.88 -0.11 -0.22 16 17 C -0.53 -15.01 9.66 -34.44 -0.33 -15.35 16 18 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 19 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 20 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 21 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.27 -6.12 6.53 56.52 0.37 -5.75 16 25 C 0.06 0.51 4.73 -4.65 -0.02 0.48 16 26 H 0.02 0.17 8.02 -51.93 -0.42 -0.25 16 27 H 0.07 0.49 7.75 -51.93 -0.40 0.08 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.03 0.21 7.93 -51.93 -0.41 -0.20 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.39 6.64 -51.93 -0.35 0.04 16 33 H 0.07 0.52 7.78 -51.93 -0.40 0.11 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.41 8.06 -51.93 -0.42 -0.01 16 36 H 0.06 0.41 7.59 -51.93 -0.39 0.02 16 37 H 0.07 0.47 8.06 -51.93 -0.42 0.05 16 38 H 0.08 0.72 7.69 -51.93 -0.40 0.32 16 39 H 0.42 3.44 8.40 -34.47 -0.29 3.15 16 40 H 0.13 1.58 8.14 -51.92 -0.42 1.16 16 41 H 0.13 1.52 8.14 -51.93 -0.42 1.10 16 42 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 43 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.02 0.36 7.58 -51.93 -0.39 -0.04 16 45 H 0.02 0.46 7.18 -51.93 -0.37 0.08 16 46 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 47 H 0.05 0.40 6.78 -51.93 -0.35 0.04 16 48 H 0.08 0.67 6.33 -51.93 -0.33 0.34 16 LS Contribution 380.63 15.07 5.74 5.74 Total: -1.00 -35.11 380.63 -11.16 -46.27 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -8.74 Total: -1.33 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: -0.55 Total: -25.05 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: -0.31 Total: -43.21 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -2.05 Total: -34.48 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Atomic # 16 Polarization: 35.92 SS G_CDS: -0.59 Total: 35.34 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.11 -11.16 -46.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599416968.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.581 kcal (2) G-P(sol) polarization free energy of solvation -35.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds