Wall clock time and date at job start Tue Mar 31 2020 12:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47943 * 111.00030 * 2 1 4 4 C 1.53914 * 113.32854 * 192.17890 * 3 2 1 5 5 C 1.50532 * 112.93638 * 317.75855 * 4 3 2 6 6 C 1.54516 * 108.85888 * 91.76040 * 5 4 3 7 7 C 1.45870 * 111.67901 * 282.74448 * 6 5 4 8 8 H 1.09003 * 108.84663 * 300.77523 * 7 6 5 9 9 C 1.53006 * 108.84437 * 182.30945 * 7 6 5 10 10 N 1.46500 * 109.46952 * 173.48274 * 9 7 6 11 11 S 1.65606 * 119.99825 * 164.99981 * 10 9 7 12 12 O 1.42097 * 104.27560 * 308.93171 * 11 10 9 13 13 O 1.42091 * 104.27561 * 181.06907 * 11 10 9 14 14 C 1.81407 * 104.44700 * 64.99932 * 11 10 9 15 15 C 1.52996 * 109.46799 * 180.02562 * 14 11 10 16 16 C 1.52998 * 109.46929 * 180.02562 * 15 14 11 17 17 C 1.50706 * 109.47348 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99302 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00436 * 179.72505 * 17 16 15 20 20 N 1.31514 * 120.00481 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99745 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47209 * 90.00365 * 21 19 17 23 23 H 1.48506 * 109.47294 * 210.00213 * 21 19 17 24 24 H 1.48501 * 109.47275 * 330.00116 * 21 19 17 25 25 C 1.44394 * 111.04911 * 232.66017 * 2 1 3 26 26 H 1.08999 * 109.47101 * 56.04420 * 1 2 3 27 27 H 1.09003 * 109.47256 * 176.05048 * 1 2 3 28 28 H 1.09003 * 109.47264 * 296.04502 * 1 2 3 29 29 H 1.09002 * 108.71240 * 71.18389 * 3 2 1 30 30 H 1.09004 * 108.71292 * 313.17068 * 3 2 1 31 31 H 1.09007 * 108.79090 * 196.86755 * 4 3 2 32 32 H 1.08996 * 108.70409 * 78.59004 * 4 3 2 33 33 H 1.09005 * 109.57347 * 331.94476 * 5 4 3 34 34 H 1.09000 * 109.67919 * 211.64162 * 5 4 3 35 35 H 1.08994 * 109.04028 * 162.17535 * 6 5 4 36 36 H 1.08998 * 109.03305 * 43.30577 * 6 5 4 37 37 H 1.08995 * 109.47044 * 53.48718 * 9 7 6 38 38 H 1.08998 * 109.46878 * 293.48100 * 9 7 6 39 39 H 0.96998 * 120.00233 * 345.00100 * 10 9 7 40 40 H 1.09000 * 109.46876 * 60.00006 * 14 11 10 41 41 H 1.08994 * 109.47253 * 300.00070 * 14 11 10 42 42 H 1.09000 * 109.47441 * 60.00303 * 15 14 11 43 43 H 1.09002 * 109.47087 * 299.99749 * 15 14 11 44 44 H 1.09001 * 109.47671 * 60.00109 * 16 15 14 45 45 H 1.08998 * 109.47454 * 300.00107 * 16 15 14 46 46 H 0.96995 * 120.00207 * 179.97438 * 20 19 17 47 47 H 1.09000 * 109.79343 * 101.70591 * 25 2 1 48 48 H 1.08998 * 109.64095 * 341.08894 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3812 0.0000 4 6 3.5074 1.4551 -0.2982 5 6 4.2989 0.3906 0.4134 6 6 4.4180 -0.8435 -0.5086 7 6 3.1841 -1.6214 -0.5298 8 1 2.9574 -1.9498 0.4845 9 6 3.3918 -2.8536 -1.4128 10 7 2.2170 -3.7240 -1.3206 11 16 1.9903 -4.9295 -2.4332 12 8 2.1248 -4.2774 -3.6886 13 8 0.7632 -5.5343 -2.0494 14 6 3.3752 -6.0678 -2.1557 15 6 3.2772 -7.2386 -3.1357 16 6 4.4449 -8.1990 -2.9012 17 6 4.3481 -9.3526 -3.8662 18 1 3.5347 -9.3965 -4.5754 19 6 5.3005 -10.3493 -3.8470 20 7 5.2163 -11.3557 -4.6894 21 14 6.7115 -10.2694 -2.6254 22 1 6.3202 -10.9617 -1.3712 23 1 7.9065 -10.9335 -3.2053 24 1 7.0295 -8.8495 -2.3286 25 6 1.9876 -0.8174 -1.0714 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3634 -1.0252 -0.0708 28 1 -0.3634 0.4512 0.9233 29 1 1.8136 1.8270 0.9772 30 1 1.4651 1.9608 -0.7530 31 1 3.8785 2.4329 0.0090 32 1 3.6571 1.3450 -1.3721 33 1 3.7881 0.1103 1.3347 34 1 5.2940 0.7685 0.6482 35 1 5.2310 -1.4762 -0.1527 36 1 4.6456 -0.5102 -1.5211 37 1 4.2742 -3.3974 -1.0758 38 1 3.5313 -2.5399 -2.4473 39 1 1.5720 -3.5943 -0.6078 40 1 3.3364 -6.4448 -1.1336 41 1 4.3161 -5.5406 -2.3130 42 1 3.3163 -6.8613 -4.1576 43 1 2.3363 -7.7660 -2.9788 44 1 4.4055 -8.5764 -1.8794 45 1 5.3860 -7.6720 -3.0578 46 1 5.8866 -12.0566 -4.6762 47 1 2.3144 -0.1825 -1.8950 48 1 1.2128 -1.5008 -1.4188 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599416968.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:36 Heat of formation + Delta-G solvation = -116.110649 kcal Electronic energy + Delta-G solvation = -25375.431364 eV Core-core repulsion = 21783.494749 eV Total energy + Delta-G solvation = -3591.936615 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.44802 -38.17975 -37.07389 -36.86198 -36.49485 -35.20674 -34.24247 -32.80101 -30.14444 -28.68133 -27.37882 -25.57664 -25.35484 -23.73399 -22.26043 -21.29524 -20.60144 -20.22516 -18.97312 -18.51181 -17.57531 -17.19580 -17.10671 -16.60407 -16.28827 -16.17220 -15.84577 -15.52307 -14.89305 -14.72993 -14.52595 -14.41384 -14.10009 -14.03526 -13.89349 -13.63902 -13.36792 -13.22065 -13.19500 -13.11127 -13.00829 -12.68865 -12.68170 -12.53932 -12.26767 -11.93737 -11.83943 -11.63590 -11.60991 -11.46850 -11.40511 -11.32178 -11.24346 -11.16622 -10.77234 -10.30705 -9.14623 -8.29542 -6.35636 -0.70826 1.37482 1.40140 1.51768 1.83674 2.36932 2.78498 2.96230 3.05607 3.26140 3.70769 3.73093 3.89274 3.94604 3.96802 4.13034 4.14895 4.33978 4.35745 4.45524 4.49465 4.55718 4.62333 4.62694 4.72755 4.76711 4.83959 4.87199 4.89545 4.91236 4.96941 5.02949 5.04980 5.16242 5.24117 5.34933 5.39178 5.46790 5.47154 5.47548 5.61884 5.63042 6.13986 6.15989 6.25591 6.30507 6.72725 7.29057 8.87485 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.022104 B = 0.002659 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.427844 B =10526.983156 C =11408.461552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.556 5.556 3 C 0.060 3.940 4 C -0.121 4.121 5 C -0.106 4.106 6 C -0.117 4.117 7 C -0.075 4.075 8 H 0.089 0.911 9 C 0.104 3.896 10 N -1.107 6.107 11 S 2.624 3.376 12 O -0.994 6.994 13 O -0.997 6.997 14 C -0.610 4.610 15 C -0.105 4.105 16 C -0.005 4.005 17 C -0.544 4.544 18 H 0.028 0.972 19 C -0.001 4.001 20 N -0.953 5.953 21 Si 0.956 3.044 22 H -0.265 1.265 23 H -0.286 1.286 24 H -0.237 1.237 25 C 0.060 3.940 26 H 0.021 0.979 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.027 0.973 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.424 0.576 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.031 0.969 45 H 0.034 0.966 46 H 0.267 0.733 47 H 0.039 0.961 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.091 29.548 15.500 33.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.281 5.281 3 C -0.067 4.067 4 C -0.158 4.158 5 C -0.144 4.144 6 C -0.155 4.155 7 C -0.096 4.096 8 H 0.107 0.893 9 C -0.022 4.022 10 N -0.869 5.869 11 S 2.720 3.280 12 O -0.984 6.984 13 O -0.987 6.987 14 C -0.741 4.741 15 C -0.144 4.144 16 C -0.044 4.044 17 C -0.582 4.582 18 H 0.047 0.953 19 C -0.197 4.197 20 N -0.594 5.594 21 Si 0.779 3.221 22 H -0.190 1.190 23 H -0.212 1.212 24 H -0.159 1.159 25 C -0.069 4.069 26 H 0.040 0.960 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.045 0.955 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.110 0.890 38 H 0.091 0.909 39 H 0.261 0.739 40 H 0.174 0.826 41 H 0.174 0.826 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.049 0.951 45 H 0.052 0.948 46 H 0.076 0.924 47 H 0.058 0.942 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.469 29.169 15.069 32.924 hybrid contribution 0.202 -0.397 -0.379 0.585 sum -2.268 28.772 14.690 32.384 Atomic orbital electron populations 1.22465 0.86643 1.02088 1.01034 1.60757 1.07642 1.13060 1.46611 1.22455 0.95391 0.87762 1.01078 1.21414 0.93547 1.00306 1.00574 1.21218 0.99815 0.94567 0.98763 1.20610 0.96964 0.97514 1.00404 1.20198 0.95583 0.93644 1.00154 0.89266 1.21778 0.87153 0.91681 1.01559 1.55294 1.35707 1.47711 1.48215 1.04297 0.75597 0.74635 0.73482 1.93532 1.87560 1.73697 1.43596 1.93535 1.43230 1.78596 1.83364 1.30500 1.20764 1.12473 1.10341 1.21180 1.00941 0.94743 0.97540 1.19511 0.95098 0.93446 0.96330 1.21570 1.10703 1.07180 1.18788 0.95311 1.26138 1.01286 0.94423 0.97883 1.70086 1.37296 1.12510 1.39462 0.85573 0.77619 0.80308 0.78631 1.19001 1.21191 1.15949 1.21946 0.97397 0.95711 0.91861 0.96007 0.91292 0.90595 0.90598 0.95494 0.90404 0.92765 0.91417 0.91148 0.90494 0.92139 0.88980 0.90894 0.73896 0.82566 0.82635 0.91930 0.92064 0.95071 0.94799 0.92445 0.94240 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.49 127.69 1.21 1.54 16 2 N -0.56 -7.78 4.25 -922.22 -3.92 -11.71 16 3 C 0.06 0.72 5.44 86.41 0.47 1.19 16 4 C -0.12 -1.23 5.28 30.10 0.16 -1.08 16 5 C -0.11 -1.06 5.63 30.31 0.17 -0.88 16 6 C -0.12 -1.24 4.51 28.92 0.13 -1.10 16 7 C -0.08 -0.94 1.85 -12.64 -0.02 -0.97 16 8 H 0.09 1.12 8.08 -2.39 -0.02 1.10 16 9 C 0.10 1.47 5.43 86.38 0.47 1.94 16 10 N -1.11 -19.09 5.08 -187.49 -0.95 -20.04 16 11 S 2.62 68.94 5.46 -56.49 -0.31 68.63 16 12 O -0.99 -32.88 17.50 -127.65 -2.23 -35.12 16 13 O -1.00 -33.18 18.08 -127.65 -2.31 -35.49 16 14 C -0.61 -15.44 6.07 71.98 0.44 -15.00 16 15 C -0.10 -3.98 5.16 30.59 0.16 -3.82 16 16 C -0.01 -0.24 4.04 29.85 0.12 -0.12 16 17 C -0.54 -31.61 9.66 25.60 0.25 -31.36 16 18 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 19 C 0.00 -0.04 5.47 84.65 0.46 0.42 16 20 N -0.95 -60.32 13.96 21.45 0.30 -60.02 16 21 Si 0.96 43.05 27.47 68.60 1.88 44.93 16 22 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 23 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 24 H -0.24 -9.46 6.53 99.48 0.65 -8.81 16 25 C 0.06 0.91 4.73 87.11 0.41 1.32 16 26 H 0.02 0.29 8.02 -2.39 -0.02 0.27 16 27 H 0.07 0.90 7.75 -2.39 -0.02 0.88 16 28 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.03 0.34 7.93 -2.38 -0.02 0.32 16 31 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.05 0.63 6.64 -2.39 -0.02 0.61 16 33 H 0.07 0.78 7.78 -2.38 -0.02 0.76 16 34 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.08 0.67 8.06 -2.39 -0.02 0.65 16 36 H 0.06 0.67 7.59 -2.39 -0.02 0.65 16 37 H 0.09 0.90 8.06 -2.39 -0.02 0.88 16 38 H 0.07 1.17 7.69 -2.39 -0.02 1.15 16 39 H 0.42 6.12 8.40 -96.74 -0.81 5.31 16 40 H 0.16 3.16 8.14 -2.39 -0.02 3.14 16 41 H 0.16 3.06 8.14 -2.39 -0.02 3.04 16 42 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.03 1.31 7.58 -2.39 -0.02 1.29 16 45 H 0.03 1.43 7.18 -2.39 -0.02 1.41 16 46 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 47 H 0.04 0.64 6.78 -2.39 -0.02 0.63 16 48 H 0.06 1.11 6.33 -2.39 -0.02 1.09 16 Total: -1.00 -77.73 380.63 -3.07 -80.79 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.05 Total: 15.94 kcal Atomic # 6 Polarization: -52.34 SS G_CDS: 4.43 Total: -47.92 kcal Atomic # 7 Polarization: -87.19 SS G_CDS: -4.58 Total: -91.77 kcal Atomic # 8 Polarization: -66.07 SS G_CDS: -4.54 Total: -70.61 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 1.88 Total: 44.93 kcal Atomic # 16 Polarization: 68.94 SS G_CDS: -0.31 Total: 68.63 kcal Total: -77.73 -3.07 -80.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599416968.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.320 kcal (2) G-P(sol) polarization free energy of solvation -77.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds