Wall clock time and date at job start Tue Mar 31 2020 11:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46896 * 109.47106 * 2 1 4 4 C 1.44098 * 111.06891 * 64.80133 * 3 2 1 5 5 C 1.52479 * 105.33047 * 223.53624 * 4 3 2 6 6 C 1.46643 * 113.99515 * 269.45992 * 5 4 3 7 7 N 1.50234 * 106.98808 * 58.21207 * 6 5 4 8 8 S 1.65601 * 120.55171 * 111.45283 * 7 6 5 9 9 O 1.42103 * 104.27875 * 211.88320 * 8 7 6 10 10 O 1.42094 * 104.27969 * 339.74665 * 8 7 6 11 11 C 1.81408 * 104.44725 * 95.81617 * 8 7 6 12 12 C 1.53005 * 109.47088 * 179.97438 * 11 8 7 13 13 C 1.52996 * 109.46817 * 180.02562 * 12 11 8 14 14 C 1.50700 * 109.46860 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00031 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99990 * 179.97438 * 14 13 12 17 17 N 1.31522 * 120.00296 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00095 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47286 * 89.99774 * 18 16 14 20 20 H 1.48499 * 109.47110 * 209.99942 * 18 16 14 21 21 H 1.48499 * 109.47280 * 329.99815 * 18 16 14 22 22 C 1.43655 * 118.89415 * 291.47638 * 7 6 5 23 23 H 1.09000 * 108.13934 * 327.40972 * 22 7 6 24 24 C 1.52990 * 108.14297 * 210.67378 * 22 7 6 25 25 C 1.48821 * 111.00111 * 189.99676 * 3 2 1 26 26 H 1.09001 * 109.46966 * 299.99780 * 1 2 3 27 27 H 1.09000 * 109.47345 * 60.00100 * 1 2 3 28 28 H 1.08995 * 109.47299 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47264 * 239.99516 * 2 1 3 30 30 H 1.09007 * 109.47070 * 120.00234 * 2 1 3 31 31 H 1.08999 * 110.38678 * 104.54431 * 4 3 2 32 32 H 1.09002 * 110.19465 * 342.43221 * 4 3 2 33 33 H 1.09003 * 108.55194 * 148.33553 * 5 4 3 34 34 H 1.08998 * 108.55424 * 30.58137 * 5 4 3 35 35 H 1.09006 * 109.94867 * 177.58234 * 6 5 4 36 36 H 1.08994 * 109.95354 * 298.75254 * 6 5 4 37 37 H 1.08993 * 109.47012 * 299.99574 * 11 8 7 38 38 H 1.09002 * 109.47298 * 59.99863 * 11 8 7 39 39 H 1.08993 * 109.47039 * 299.99793 * 12 11 8 40 40 H 1.09002 * 109.46970 * 59.99899 * 12 11 8 41 41 H 1.09002 * 109.46813 * 299.99619 * 13 12 11 42 42 H 1.08997 * 109.47612 * 59.99645 * 13 12 11 43 43 H 0.97000 * 120.00096 * 179.97438 * 17 16 14 44 44 H 1.09001 * 109.47570 * 54.04220 * 24 22 7 45 45 H 1.09005 * 109.47067 * 174.03917 * 24 22 7 46 46 H 1.09000 * 109.47383 * 294.03442 * 24 22 7 47 47 H 1.09001 * 109.23164 * 75.97129 * 25 3 2 48 48 H 1.08995 * 109.20473 * 316.57242 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6526 2.0642 1.2167 5 6 1.1712 3.4432 0.7791 6 6 2.2293 4.4574 0.7333 7 7 3.2783 3.9547 -0.2175 8 16 3.5264 4.7070 -1.6717 9 8 3.9326 3.6605 -2.5430 10 8 2.3239 5.4278 -1.9031 11 6 4.9026 5.8477 -1.3622 12 6 5.2312 6.6110 -2.6469 13 6 6.3923 7.5726 -2.3860 14 6 6.7155 8.3248 -3.6512 15 1 6.1496 8.1357 -4.5514 16 6 7.7336 9.2546 -3.6594 17 7 8.0160 9.9108 -4.7637 18 14 8.7118 9.5823 -2.1022 19 1 9.8816 8.6688 -2.0509 20 1 9.1830 10.9905 -2.1008 21 1 7.8486 9.3480 -0.9168 22 6 4.0622 2.8102 0.1558 23 1 4.1909 2.8253 1.2380 24 6 5.4436 2.9488 -0.4870 25 6 3.4874 1.4317 -0.2412 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 2.5163 2.1575 1.8749 32 1 0.8492 1.5264 1.7202 33 1 0.3998 3.7776 1.4729 34 1 0.7296 3.3575 -0.2138 35 1 1.8231 5.4027 0.3730 36 1 2.6589 4.5918 1.7259 37 1 4.6205 6.5541 -0.5816 38 1 5.7779 5.2826 -1.0418 39 1 5.5135 5.9044 -3.4272 40 1 4.3560 7.1761 -2.9677 41 1 6.1103 8.2793 -1.6055 42 1 7.2673 7.0072 -2.0653 43 1 8.7320 10.5651 -4.7694 44 1 5.8762 3.9115 -0.2148 45 1 6.0912 2.1465 -0.1332 46 1 5.3479 2.8869 -1.5711 47 1 3.6835 1.2518 -1.2982 48 1 3.9730 0.6561 0.3510 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601440525.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:15 Heat of formation + Delta-G solvation = -56.158358 kcal Electronic energy + Delta-G solvation = -26604.584884 eV Core-core repulsion = 23015.247995 eV Total energy + Delta-G solvation = -3589.336889 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.77642 -37.15923 -36.23926 -35.64968 -34.83472 -33.80687 -32.20936 -31.24851 -28.99250 -28.32642 -26.64828 -25.13371 -23.51424 -22.01162 -21.96373 -20.54343 -20.25335 -18.55779 -17.16036 -16.99058 -16.74162 -16.23540 -15.77477 -15.72675 -15.41496 -14.97813 -14.29731 -14.20269 -14.00673 -13.70789 -13.37299 -13.18283 -12.93515 -12.82200 -12.78146 -12.31356 -12.26590 -12.11897 -12.08138 -11.85181 -11.69881 -11.57519 -11.56051 -11.35184 -11.08570 -10.98389 -10.93292 -10.86158 -10.82924 -10.43719 -10.05605 -9.86647 -9.68982 -9.27324 -8.99642 -8.58299 -8.43759 -6.07900 -4.07052 0.44697 2.72438 3.26477 3.34104 3.36266 3.66669 4.02274 4.26818 4.32258 4.40602 4.61845 4.67941 4.78778 4.85819 4.96092 4.98290 5.02719 5.08132 5.13452 5.20818 5.24748 5.25927 5.26562 5.38580 5.46275 5.53542 5.60249 5.63560 5.72621 5.75617 5.81995 5.85243 5.96144 6.00120 6.15480 6.21886 6.25609 6.32119 6.58900 6.68580 6.89292 7.05010 7.13526 7.27626 7.71738 8.48461 8.96751 9.53240 11.05415 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.029301 B = 0.003081 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.381925 B = 9084.432870 C = 9167.478546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 N -0.536 5.536 4 C 0.054 3.946 5 C -0.136 4.136 6 C 0.127 3.873 7 N -0.989 5.989 8 S 2.606 3.394 9 O -0.953 6.953 10 O -0.960 6.960 11 C -0.627 4.627 12 C -0.097 4.097 13 C -0.004 4.004 14 C -0.526 4.526 15 H 0.075 0.925 16 C 0.067 3.933 17 N -0.900 5.900 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.266 1.266 22 C 0.164 3.836 23 H 0.073 0.927 24 C -0.235 4.235 25 C 0.040 3.960 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.029 0.971 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.020 0.980 42 H 0.015 0.985 43 H 0.264 0.736 44 H 0.071 0.929 45 H 0.080 0.920 46 H 0.111 0.889 47 H 0.089 0.911 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.095 -19.281 16.873 28.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.079 4.079 3 N -0.260 5.260 4 C -0.075 4.075 5 C -0.175 4.175 6 C 0.004 3.996 7 N -0.825 5.825 8 S 2.702 3.298 9 O -0.943 6.943 10 O -0.950 6.950 11 C -0.758 4.758 12 C -0.136 4.136 13 C -0.043 4.043 14 C -0.564 4.564 15 H 0.093 0.907 16 C -0.134 4.134 17 N -0.539 5.539 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.191 1.191 22 C 0.056 3.944 23 H 0.091 0.909 24 C -0.293 4.293 25 C -0.089 4.089 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.089 0.911 37 H 0.144 0.856 38 H 0.150 0.850 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.038 0.962 42 H 0.033 0.967 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.099 0.901 46 H 0.129 0.871 47 H 0.108 0.892 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.722 -19.071 15.648 27.756 hybrid contribution 1.554 0.060 1.947 2.492 sum -11.169 -19.011 17.595 28.209 Atomic orbital electron populations 1.21839 0.94889 1.01351 1.02625 1.22124 0.96078 0.89168 1.00524 1.61969 1.13516 1.14919 1.35628 1.21703 0.99769 0.95137 0.90876 1.20849 0.98376 0.94646 1.03639 1.20931 0.87835 0.97993 0.92865 1.57885 1.47786 1.38912 1.37944 1.05262 0.76201 0.75232 0.73062 1.93493 1.83992 1.53376 1.63455 1.93539 1.43041 1.74933 1.83487 1.30989 1.19170 1.16001 1.09601 1.21298 1.02016 0.98741 0.91541 1.19524 0.92590 0.94074 0.98067 1.21142 1.17717 1.21162 0.96412 0.90716 1.25028 0.96857 0.95482 0.96064 1.69914 1.30998 1.26070 1.26923 0.86779 0.80605 0.77560 0.84342 1.20231 1.21271 1.19056 1.20216 0.89373 0.85301 0.99539 0.90939 1.23254 0.95924 1.03897 1.06237 1.23359 0.86689 0.95942 1.02922 0.92672 0.91687 0.92463 0.90839 0.95259 0.93374 0.91017 0.91553 0.89847 0.88484 0.91110 0.85570 0.85024 0.91053 0.91114 0.96221 0.96653 0.92634 0.90994 0.90078 0.87100 0.89237 0.93638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.86 37.16 0.37 -0.73 16 2 C 0.05 0.40 5.51 -3.83 -0.02 0.38 16 3 N -0.54 -5.33 4.03 -234.62 -0.95 -6.27 16 4 C 0.05 0.45 5.17 -5.59 -0.03 0.42 16 5 C -0.14 -1.24 5.33 -30.03 -0.16 -1.40 16 6 C 0.13 1.20 6.00 -4.99 -0.03 1.17 16 7 N -0.99 -11.30 2.88 -108.73 -0.31 -11.61 16 8 S 2.61 39.22 4.80 -107.50 -0.52 38.71 16 9 O -0.95 -16.29 14.80 -57.54 -0.85 -17.14 16 10 O -0.96 -17.14 16.60 -57.54 -0.96 -18.10 16 11 C -0.63 -9.36 5.78 37.16 0.21 -9.14 16 12 C -0.10 -1.91 5.16 -26.73 -0.14 -2.05 16 13 C 0.00 -0.09 4.04 -27.88 -0.11 -0.21 16 14 C -0.53 -15.06 9.66 -34.44 -0.33 -15.39 16 15 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 16 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 17 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 18 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 22 C 0.16 1.62 2.04 -68.64 -0.14 1.48 16 23 H 0.07 0.58 6.88 -51.93 -0.36 0.22 16 24 C -0.24 -2.38 7.68 37.15 0.29 -2.09 16 25 C 0.04 0.40 5.35 -1.95 -0.01 0.39 16 26 H 0.05 0.38 6.35 -51.93 -0.33 0.05 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 30 H 0.03 0.22 8.13 -51.93 -0.42 -0.21 16 31 H 0.05 0.37 6.12 -51.93 -0.32 0.05 16 32 H 0.07 0.51 5.86 -51.93 -0.30 0.21 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.98 7.86 -51.93 -0.41 0.57 16 35 H 0.10 0.97 7.06 -51.93 -0.37 0.60 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.13 1.64 8.14 -51.93 -0.42 1.22 16 38 H 0.13 1.71 5.29 -51.92 -0.27 1.44 16 39 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 40 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 42 H 0.02 0.35 7.57 -51.93 -0.39 -0.05 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.07 0.69 5.44 -51.93 -0.28 0.40 16 45 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.11 1.38 5.18 -51.93 -0.27 1.11 16 47 H 0.09 1.05 7.97 -51.93 -0.41 0.64 16 48 H 0.05 0.37 8.00 -51.93 -0.42 -0.04 16 LS Contribution 366.78 15.07 5.53 5.53 Total: -1.00 -34.48 366.78 -10.47 -44.96 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -8.32 Total: -0.53 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: -0.21 Total: -25.31 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: -0.49 Total: -44.90 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -1.81 Total: -35.24 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Atomic # 16 Polarization: 39.22 SS G_CDS: -0.52 Total: 38.71 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.48 -10.47 -44.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601440525.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.203 kcal (2) G-P(sol) polarization free energy of solvation -34.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds