Wall clock time and date at job start Tue Mar 31 2020 11:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46896 * 109.47106 * 2 1 4 4 C 1.44098 * 111.06891 * 64.80133 * 3 2 1 5 5 C 1.52479 * 105.33047 * 223.53624 * 4 3 2 6 6 C 1.46643 * 113.99515 * 269.45992 * 5 4 3 7 7 N 1.50234 * 106.98808 * 58.21207 * 6 5 4 8 8 S 1.65601 * 120.55171 * 111.45283 * 7 6 5 9 9 O 1.42103 * 104.27875 * 211.88320 * 8 7 6 10 10 O 1.42094 * 104.27969 * 339.74665 * 8 7 6 11 11 C 1.81408 * 104.44725 * 95.81617 * 8 7 6 12 12 C 1.53005 * 109.47088 * 179.97438 * 11 8 7 13 13 C 1.52996 * 109.46817 * 180.02562 * 12 11 8 14 14 C 1.50700 * 109.46860 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00031 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99990 * 179.97438 * 14 13 12 17 17 N 1.31522 * 120.00296 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00095 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47286 * 89.99774 * 18 16 14 20 20 H 1.48499 * 109.47110 * 209.99942 * 18 16 14 21 21 H 1.48499 * 109.47280 * 329.99815 * 18 16 14 22 22 C 1.43655 * 118.89415 * 291.47638 * 7 6 5 23 23 H 1.09000 * 108.13934 * 327.40972 * 22 7 6 24 24 C 1.52990 * 108.14297 * 210.67378 * 22 7 6 25 25 C 1.48821 * 111.00111 * 189.99676 * 3 2 1 26 26 H 1.09001 * 109.46966 * 299.99780 * 1 2 3 27 27 H 1.09000 * 109.47345 * 60.00100 * 1 2 3 28 28 H 1.08995 * 109.47299 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47264 * 239.99516 * 2 1 3 30 30 H 1.09007 * 109.47070 * 120.00234 * 2 1 3 31 31 H 1.08999 * 110.38678 * 104.54431 * 4 3 2 32 32 H 1.09002 * 110.19465 * 342.43221 * 4 3 2 33 33 H 1.09003 * 108.55194 * 148.33553 * 5 4 3 34 34 H 1.08998 * 108.55424 * 30.58137 * 5 4 3 35 35 H 1.09006 * 109.94867 * 177.58234 * 6 5 4 36 36 H 1.08994 * 109.95354 * 298.75254 * 6 5 4 37 37 H 1.08993 * 109.47012 * 299.99574 * 11 8 7 38 38 H 1.09002 * 109.47298 * 59.99863 * 11 8 7 39 39 H 1.08993 * 109.47039 * 299.99793 * 12 11 8 40 40 H 1.09002 * 109.46970 * 59.99899 * 12 11 8 41 41 H 1.09002 * 109.46813 * 299.99619 * 13 12 11 42 42 H 1.08997 * 109.47612 * 59.99645 * 13 12 11 43 43 H 0.97000 * 120.00096 * 179.97438 * 17 16 14 44 44 H 1.09001 * 109.47570 * 54.04220 * 24 22 7 45 45 H 1.09005 * 109.47067 * 174.03917 * 24 22 7 46 46 H 1.09000 * 109.47383 * 294.03442 * 24 22 7 47 47 H 1.09001 * 109.23164 * 75.97129 * 25 3 2 48 48 H 1.08995 * 109.20473 * 316.57242 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6526 2.0642 1.2167 5 6 1.1712 3.4432 0.7791 6 6 2.2293 4.4574 0.7333 7 7 3.2783 3.9547 -0.2175 8 16 3.5264 4.7070 -1.6717 9 8 3.9326 3.6605 -2.5430 10 8 2.3239 5.4278 -1.9031 11 6 4.9026 5.8477 -1.3622 12 6 5.2312 6.6110 -2.6469 13 6 6.3923 7.5726 -2.3860 14 6 6.7155 8.3248 -3.6512 15 1 6.1496 8.1357 -4.5514 16 6 7.7336 9.2546 -3.6594 17 7 8.0160 9.9108 -4.7637 18 14 8.7118 9.5823 -2.1022 19 1 9.8816 8.6688 -2.0509 20 1 9.1830 10.9905 -2.1008 21 1 7.8486 9.3480 -0.9168 22 6 4.0622 2.8102 0.1558 23 1 4.1909 2.8253 1.2380 24 6 5.4436 2.9488 -0.4870 25 6 3.4874 1.4317 -0.2412 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 2.5163 2.1575 1.8749 32 1 0.8492 1.5264 1.7202 33 1 0.3998 3.7776 1.4729 34 1 0.7296 3.3575 -0.2138 35 1 1.8231 5.4027 0.3730 36 1 2.6589 4.5918 1.7259 37 1 4.6205 6.5541 -0.5816 38 1 5.7779 5.2826 -1.0418 39 1 5.5135 5.9044 -3.4272 40 1 4.3560 7.1761 -2.9677 41 1 6.1103 8.2793 -1.6055 42 1 7.2673 7.0072 -2.0653 43 1 8.7320 10.5651 -4.7694 44 1 5.8762 3.9115 -0.2148 45 1 6.0912 2.1465 -0.1332 46 1 5.3479 2.8869 -1.5711 47 1 3.6835 1.2518 -1.2982 48 1 3.9730 0.6561 0.3510 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601440525.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:15 Heat of formation + Delta-G solvation = -81.364797 kcal Electronic energy + Delta-G solvation = -26605.677917 eV Core-core repulsion = 23015.247995 eV Total energy + Delta-G solvation = -3590.429922 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.49608 -38.37722 -37.11656 -36.81351 -36.53697 -34.60680 -34.22177 -31.92752 -30.28646 -29.56817 -27.38869 -25.98345 -25.14935 -22.93109 -22.68315 -21.99997 -21.15497 -19.70709 -18.97899 -18.05261 -17.76286 -17.36168 -16.71692 -16.63048 -16.35402 -16.20846 -15.81816 -15.54318 -14.90779 -14.73337 -14.43830 -14.22383 -14.03918 -13.95600 -13.74706 -13.64937 -13.41296 -13.23182 -13.13420 -13.01009 -12.78144 -12.76193 -12.58568 -12.43480 -12.37120 -12.17664 -11.84690 -11.74546 -11.67236 -11.58288 -11.57144 -11.41850 -11.32382 -11.13754 -10.77989 -9.91029 -9.08905 -8.30308 -6.36575 -0.72923 1.36362 1.39361 1.51055 1.71485 2.36183 2.87170 3.00721 3.04580 3.17641 3.45557 3.77538 3.85249 3.93920 4.04253 4.12613 4.21990 4.30661 4.32289 4.34643 4.43918 4.48603 4.57692 4.59719 4.65201 4.73507 4.73870 4.77440 4.92022 4.93919 4.95686 4.99457 5.05993 5.12971 5.18124 5.22557 5.32764 5.36600 5.44228 5.49534 5.51706 5.61692 5.80574 6.22987 6.24639 6.43235 6.71456 7.28016 8.86774 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.029301 B = 0.003081 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.381925 B = 9084.432870 C = 9167.478546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 N -0.560 5.560 4 C 0.056 3.944 5 C -0.136 4.136 6 C 0.120 3.880 7 N -0.981 5.981 8 S 2.614 3.386 9 O -0.982 6.982 10 O -0.995 6.995 11 C -0.619 4.619 12 C -0.102 4.102 13 C -0.003 4.003 14 C -0.545 4.545 15 H 0.028 0.972 16 C 0.000 4.000 17 N -0.953 5.953 18 Si 0.956 3.044 19 H -0.263 1.263 20 H -0.285 1.285 21 H -0.238 1.238 22 C 0.159 3.841 23 H 0.107 0.893 24 C -0.240 4.240 25 C 0.039 3.961 26 H 0.062 0.938 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.045 0.955 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.153 0.847 38 H 0.157 0.843 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.032 0.968 42 H 0.032 0.968 43 H 0.267 0.733 44 H 0.080 0.920 45 H 0.103 0.897 46 H 0.082 0.918 47 H 0.060 0.940 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.476 -20.364 21.555 31.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.079 4.079 3 N -0.285 5.285 4 C -0.072 4.072 5 C -0.175 4.175 6 C -0.002 4.002 7 N -0.820 5.820 8 S 2.711 3.289 9 O -0.972 6.972 10 O -0.986 6.986 11 C -0.749 4.749 12 C -0.141 4.141 13 C -0.042 4.042 14 C -0.583 4.583 15 H 0.046 0.954 16 C -0.197 4.197 17 N -0.593 5.593 18 Si 0.778 3.222 19 H -0.188 1.188 20 H -0.211 1.211 21 H -0.161 1.161 22 C 0.051 3.949 23 H 0.125 0.875 24 C -0.298 4.298 25 C -0.090 4.090 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.067 0.933 35 H 0.106 0.894 36 H 0.127 0.873 37 H 0.171 0.829 38 H 0.175 0.825 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.076 0.924 44 H 0.099 0.901 45 H 0.122 0.878 46 H 0.101 0.899 47 H 0.079 0.921 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.131 -20.173 20.322 31.097 hybrid contribution 1.280 0.342 0.399 1.383 sum -10.851 -19.831 20.720 30.665 Atomic orbital electron populations 1.21806 0.94426 1.02054 1.01987 1.22143 0.96431 0.88577 1.00754 1.61915 1.13527 1.15998 1.37039 1.21745 1.00751 0.94303 0.90400 1.20854 0.98835 0.95501 1.02322 1.21230 0.87567 0.97586 0.93852 1.57625 1.48412 1.39009 1.36928 1.04716 0.75517 0.74819 0.73806 1.93474 1.84229 1.54109 1.65372 1.93489 1.44709 1.75798 1.84580 1.30904 1.20211 1.16265 1.07522 1.21161 1.00385 0.98429 0.94143 1.19490 0.94473 0.94602 0.95595 1.21552 1.17386 1.22130 0.97234 0.95361 1.26136 0.98203 0.95018 1.00296 1.70090 1.32115 1.27148 1.29935 0.85577 0.79198 0.77551 0.79849 1.18815 1.21089 1.16086 1.20453 0.88763 0.84370 1.01281 0.87525 1.23269 0.96718 1.05292 1.04495 1.23324 0.87232 0.96798 1.01663 0.91897 0.93665 0.91110 0.91825 0.93727 0.91779 0.89762 0.89237 0.93339 0.89433 0.87279 0.82920 0.82543 0.92072 0.92347 0.94942 0.94955 0.92402 0.90134 0.87804 0.89923 0.92141 0.91437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.86 71.98 0.71 -1.26 16 2 C 0.05 0.73 5.51 86.30 0.48 1.20 16 3 N -0.56 -10.25 4.03 -896.19 -3.62 -13.87 16 4 C 0.06 0.76 5.17 86.65 0.45 1.21 16 5 C -0.14 -2.17 5.33 28.46 0.15 -2.02 16 6 C 0.12 1.92 6.00 83.68 0.50 2.42 16 7 N -0.98 -20.34 2.88 -497.92 -1.44 -21.78 16 8 S 2.61 78.00 4.80 -56.49 -0.27 77.73 16 9 O -0.98 -34.54 14.80 -127.65 -1.89 -36.43 16 10 O -1.00 -36.28 16.60 -127.65 -2.12 -38.40 16 11 C -0.62 -17.26 5.78 71.98 0.42 -16.84 16 12 C -0.10 -4.04 5.16 30.59 0.16 -3.89 16 13 C 0.00 -0.14 4.04 29.85 0.12 -0.02 16 14 C -0.55 -32.00 9.66 25.60 0.25 -31.75 16 15 H 0.03 1.84 7.99 -2.91 -0.02 1.82 16 16 C 0.00 0.00 5.47 84.65 0.46 0.47 16 17 N -0.95 -60.54 13.96 21.45 0.30 -60.24 16 18 Si 0.96 43.26 27.47 68.60 1.88 45.15 16 19 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 20 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.24 -9.62 6.54 99.48 0.65 -8.97 16 22 C 0.16 2.67 2.04 46.04 0.09 2.77 16 23 H 0.11 1.15 6.88 -2.39 -0.02 1.13 16 24 C -0.24 -4.24 7.68 71.98 0.55 -3.69 16 25 C 0.04 0.71 5.35 86.45 0.46 1.17 16 26 H 0.06 0.74 6.35 -2.39 -0.02 0.73 16 27 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 1.05 8.08 -2.39 -0.02 1.03 16 30 H 0.04 0.54 8.13 -2.38 -0.02 0.52 16 31 H 0.06 0.67 6.12 -2.39 -0.01 0.66 16 32 H 0.08 0.92 5.86 -2.39 -0.01 0.90 16 33 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.05 1.13 7.86 -2.39 -0.02 1.11 16 35 H 0.09 1.59 7.06 -2.38 -0.02 1.57 16 36 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.15 3.45 8.14 -2.39 -0.02 3.43 16 38 H 0.16 3.57 5.29 -2.39 -0.01 3.56 16 39 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.03 1.41 7.20 -2.39 -0.02 1.39 16 42 H 0.03 1.37 7.57 -2.39 -0.02 1.36 16 43 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 44 H 0.08 1.25 5.44 -2.39 -0.01 1.24 16 45 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 46 H 0.08 2.01 5.18 -2.39 -0.01 2.00 16 47 H 0.06 1.44 7.97 -2.39 -0.02 1.42 16 48 H 0.07 0.91 8.00 -2.39 -0.02 0.89 16 Total: -1.00 -78.91 366.78 -1.48 -80.39 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.87 Total: 17.67 kcal Atomic # 6 Polarization: -55.02 SS G_CDS: 4.80 Total: -50.22 kcal Atomic # 7 Polarization: -91.14 SS G_CDS: -4.75 Total: -95.89 kcal Atomic # 8 Polarization: -70.82 SS G_CDS: -4.01 Total: -74.82 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.88 Total: 45.15 kcal Atomic # 16 Polarization: 78.00 SS G_CDS: -0.27 Total: 77.73 kcal Total: -78.91 -1.48 -80.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601440525.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.979 kcal (2) G-P(sol) polarization free energy of solvation -78.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds