Wall clock time and date at job start Tue Mar 31 2020 12:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 S 1.81395 * 109.47128 * 2 1 4 4 O 1.42106 * 110.54441 * 68.37900 * 3 2 1 5 5 O 1.42101 * 110.54684 * 291.62843 * 3 2 1 6 6 N 1.65598 * 104.44942 * 180.02562 * 3 2 1 7 7 C 1.46502 * 120.00235 * 65.00275 * 6 3 2 8 8 C 1.53116 * 109.52325 * 214.99878 * 7 6 3 9 9 C 1.53040 * 109.27607 * 182.37210 * 8 7 6 10 10 N 1.46853 * 109.52044 * 59.18022 * 9 8 7 11 11 C 1.46898 * 110.99552 * 174.15636 * 10 9 8 12 12 C 1.53006 * 109.47025 * 176.22316 * 11 10 9 13 13 H 1.09011 * 109.46853 * 301.94935 * 12 11 10 14 14 C 1.53002 * 109.47145 * 61.94494 * 12 11 10 15 15 C 1.52992 * 109.47290 * 181.94775 * 12 11 10 16 16 C 1.50698 * 109.47069 * 174.99569 * 15 12 11 17 17 H 1.07997 * 120.00232 * 0.02562 * 16 15 12 18 18 C 1.37889 * 120.00230 * 179.97438 * 16 15 12 19 19 N 1.31512 * 119.99366 * 359.72767 * 18 16 15 20 20 Si 1.86792 * 119.99968 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46856 * 269.72152 * 20 18 16 22 22 H 1.48497 * 109.47585 * 29.72438 * 20 18 16 23 23 H 1.48505 * 109.47083 * 149.72682 * 20 18 16 24 24 C 1.46838 * 111.19851 * 298.25803 * 10 9 8 25 25 C 1.53032 * 109.52628 * 61.74563 * 24 10 9 26 26 H 1.09004 * 109.47517 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47277 * 299.99583 * 1 2 3 28 28 H 1.08999 * 109.47446 * 59.99622 * 1 2 3 29 29 H 1.09002 * 109.46769 * 240.00412 * 2 1 3 30 30 H 1.08999 * 109.47446 * 120.00378 * 2 1 3 31 31 H 0.97002 * 120.00377 * 245.00271 * 6 3 2 32 32 H 1.08997 * 109.52069 * 335.12858 * 7 6 3 33 33 H 1.09004 * 109.50275 * 62.43782 * 8 7 6 34 34 H 1.08990 * 109.53935 * 302.33411 * 8 7 6 35 35 H 1.09000 * 109.46840 * 299.16903 * 9 8 7 36 36 H 1.09001 * 109.45035 * 179.18974 * 9 8 7 37 37 H 1.08999 * 109.47594 * 56.22550 * 11 10 9 38 38 H 1.08999 * 109.47830 * 296.22071 * 11 10 9 39 39 H 1.08996 * 109.46939 * 300.00301 * 14 12 11 40 40 H 1.08999 * 109.46860 * 60.00105 * 14 12 11 41 41 H 1.08995 * 109.47121 * 180.02562 * 14 12 11 42 42 H 1.09004 * 109.47196 * 55.00411 * 15 12 11 43 43 H 1.08996 * 109.47636 * 295.00191 * 15 12 11 44 44 H 0.96998 * 120.00518 * 0.27602 * 19 18 16 45 45 H 1.09001 * 109.45909 * 181.76128 * 24 10 9 46 46 H 1.09004 * 109.46457 * 301.72412 * 24 10 9 47 47 H 1.09002 * 109.50627 * 180.88158 * 25 24 10 48 48 H 1.08995 * 109.50565 * 60.75804 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 8 1.8386 2.3438 1.2371 5 8 1.8384 2.3439 -1.2369 6 7 3.7842 1.5653 -0.0007 7 6 4.4666 0.9672 -1.1510 8 6 5.6813 0.1701 -0.6677 9 6 6.4234 -0.4027 -1.8773 10 7 6.8526 0.6942 -2.7543 11 6 7.6876 0.1929 -3.8541 12 6 8.0364 1.3467 -4.7964 13 1 7.1185 1.7966 -5.1753 14 6 8.8443 2.4001 -4.0358 15 6 8.8653 0.8159 -5.9677 16 6 9.1045 1.9264 -6.9578 17 1 8.7056 2.9124 -6.7703 18 6 9.8336 1.6841 -8.1028 19 7 10.3248 0.4851 -8.3280 20 14 10.1307 3.0609 -9.3298 21 1 9.0369 3.0734 -10.3341 22 1 10.1619 4.3624 -8.6155 23 1 11.4296 2.8412 -10.0153 24 6 5.7000 1.4448 -3.2685 25 6 4.9363 2.0729 -2.1005 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 4.2988 1.8763 0.7605 32 1 3.7805 0.3030 -1.6765 33 1 5.3492 -0.6452 -0.0249 34 1 6.3485 0.8258 -0.1085 35 1 5.7601 -1.0697 -2.4281 36 1 7.2970 -0.9588 -1.5372 37 1 7.1419 -0.5735 -4.4045 38 1 8.6045 -0.2347 -3.4484 39 1 8.2537 2.7782 -3.2014 40 1 9.7620 1.9503 -3.6570 41 1 9.0924 3.2222 -4.7070 42 1 8.3262 0.0039 -6.4558 43 1 9.8217 0.4464 -5.5980 44 1 10.1708 -0.2297 -7.6908 45 1 6.0482 2.2304 -3.9391 46 1 5.0400 0.7692 -3.8127 47 1 4.0720 2.6169 -2.4814 48 1 5.5916 2.7591 -1.5642 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602658444.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:22 Heat of formation + Delta-G solvation = -95.245108 kcal Electronic energy + Delta-G solvation = -25629.985681 eV Core-core repulsion = 22038.953864 eV Total energy + Delta-G solvation = -3591.031818 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.48277 -37.42421 -36.55568 -36.24321 -34.44362 -33.64422 -32.35857 -30.94766 -30.33043 -26.46068 -25.79103 -24.56684 -23.54162 -23.23974 -22.08974 -20.34295 -19.55536 -18.91874 -18.01762 -17.15100 -16.77019 -16.58220 -15.86142 -15.19784 -14.95518 -14.73590 -14.55517 -14.10453 -13.94288 -13.69875 -13.65483 -13.51516 -13.10647 -13.00775 -12.55226 -12.42572 -12.33715 -12.17062 -12.08974 -11.96955 -11.72897 -11.59667 -11.32076 -11.28570 -11.15380 -10.99535 -10.94453 -10.64237 -10.54297 -10.19125 -10.08169 -9.83811 -9.57185 -9.39763 -8.45884 -8.28459 -8.11061 -6.31597 -3.99600 -0.11797 2.35083 3.39416 3.45708 3.49325 3.64864 3.78001 4.02471 4.09607 4.31403 4.37503 4.57911 4.62086 4.67698 4.78671 4.91617 5.07823 5.09873 5.18135 5.24600 5.39494 5.41851 5.44505 5.51747 5.56360 5.60513 5.70320 5.82586 5.90854 5.99149 6.04256 6.13207 6.24904 6.33206 6.42798 6.57234 6.62963 6.89002 7.04079 7.11917 7.30278 7.30646 7.42532 7.59687 8.27801 8.51810 8.93739 9.71718 11.08906 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.025884 B = 0.002434 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.472617 B =11499.735486 C =11818.303858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.634 4.634 3 S 2.609 3.391 4 O -0.961 6.961 5 O -0.949 6.949 6 N -1.114 6.114 7 C 0.152 3.848 8 C -0.120 4.120 9 C 0.055 3.945 10 N -0.534 5.534 11 C 0.061 3.939 12 C -0.080 4.080 13 H 0.060 0.940 14 C -0.122 4.122 15 C 0.014 3.986 16 C -0.593 4.593 17 H 0.050 0.950 18 C 0.012 3.988 19 N -0.917 5.917 20 Si 1.069 2.931 21 H -0.289 1.289 22 H -0.289 1.289 23 H -0.285 1.285 24 C 0.049 3.951 25 C -0.133 4.133 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.418 0.582 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.031 0.969 36 H 0.078 0.922 37 H 0.027 0.973 38 H 0.070 0.930 39 H 0.043 0.957 40 H 0.039 0.961 41 H 0.054 0.946 42 H 0.002 0.998 43 H 0.007 0.993 44 H 0.268 0.732 45 H 0.093 0.907 46 H 0.031 0.969 47 H 0.081 0.919 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.895 -3.447 20.342 26.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.763 4.763 3 S 2.700 3.300 4 O -0.951 6.951 5 O -0.939 6.939 6 N -0.872 5.872 7 C 0.045 3.955 8 C -0.159 4.159 9 C -0.074 4.074 10 N -0.259 5.259 11 C -0.067 4.067 12 C -0.099 4.099 13 H 0.078 0.922 14 C -0.180 4.180 15 C -0.023 4.023 16 C -0.631 4.631 17 H 0.068 0.932 18 C -0.191 4.191 19 N -0.553 5.553 20 Si 0.898 3.102 21 H -0.216 1.216 22 H -0.215 1.215 23 H -0.211 1.211 24 C -0.079 4.079 25 C -0.172 4.172 26 H 0.100 0.900 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.253 0.747 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.049 0.951 36 H 0.096 0.904 37 H 0.045 0.955 38 H 0.088 0.912 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.021 0.979 43 H 0.025 0.975 44 H 0.078 0.922 45 H 0.112 0.888 46 H 0.049 0.951 47 H 0.100 0.900 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.487 -2.028 19.032 25.262 hybrid contribution -0.800 -1.731 1.281 2.297 sum -17.287 -3.758 20.314 26.937 Atomic orbital electron populations 1.21502 0.90405 1.05135 1.03551 1.30527 1.07398 1.26803 1.11619 1.05093 0.73257 0.77179 0.74436 1.93606 1.83271 1.72978 1.45266 1.93631 1.83323 1.71621 1.45340 1.55679 1.25692 1.77837 1.28017 1.20902 0.94560 0.94505 0.85520 1.21899 0.96192 0.99765 0.98083 1.22034 0.98814 0.92806 0.93736 1.62005 1.19457 1.24227 1.20217 1.22305 0.96131 0.97360 0.90855 1.21193 0.99203 0.94426 0.95041 0.92175 1.21581 0.98752 0.98929 0.98710 1.19247 0.94107 0.96534 0.92439 1.22051 1.37183 0.97042 1.06815 0.93179 1.25818 0.93768 1.00970 0.98544 1.70749 1.43823 1.02004 1.38773 0.83540 0.76685 0.74461 0.75518 1.21565 1.21483 1.21094 1.22196 0.91019 0.98499 0.96221 1.22136 1.00700 0.97976 0.96394 0.89981 0.90946 0.90817 0.85133 0.84947 0.74739 0.90477 0.91194 0.90081 0.95078 0.90387 0.95523 0.91165 0.93770 0.94152 0.92649 0.97934 0.97491 0.92177 0.88849 0.95055 0.90013 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.92 37.15 0.37 -0.40 16 2 C -0.63 -3.28 6.68 37.15 0.25 -3.03 16 3 S 2.61 21.99 5.38 -107.50 -0.58 21.41 16 4 O -0.96 -10.95 18.08 -57.54 -1.04 -11.99 16 5 O -0.95 -11.48 17.19 -57.54 -0.99 -12.47 16 6 N -1.11 -8.22 5.37 -4.78 -0.03 -8.24 16 7 C 0.15 1.31 2.62 -67.80 -0.18 1.13 16 8 C -0.12 -0.97 5.63 -26.65 -0.15 -1.12 16 9 C 0.06 0.58 5.46 -3.83 -0.02 0.56 16 10 N -0.53 -7.26 4.08 -234.67 -0.96 -8.22 16 11 C 0.06 1.00 4.55 -3.82 -0.02 0.98 16 12 C -0.08 -1.60 1.85 -90.62 -0.17 -1.77 16 13 H 0.06 1.23 6.07 -51.92 -0.32 0.91 16 14 C -0.12 -2.35 8.79 37.16 0.33 -2.02 16 15 C 0.01 0.36 3.76 -27.89 -0.10 0.25 16 16 C -0.59 -16.68 8.41 -34.44 -0.29 -16.97 16 17 H 0.05 1.39 7.06 -52.49 -0.37 1.02 16 18 C 0.01 0.35 5.46 -17.82 -0.10 0.26 16 19 N -0.92 -28.21 13.65 55.43 0.76 -27.45 16 20 Si 1.07 25.56 29.90 -169.99 -5.08 20.48 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 C 0.05 0.65 4.97 -3.84 -0.02 0.63 16 25 C -0.13 -1.49 5.70 -26.65 -0.15 -1.64 16 26 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.13 0.53 7.45 -51.92 -0.39 0.14 16 30 H 0.13 0.45 8.14 -51.92 -0.42 0.02 16 31 H 0.42 2.52 8.80 -34.47 -0.30 2.21 16 32 H 0.08 0.57 7.16 -51.93 -0.37 0.20 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.79 8.12 -51.93 -0.42 0.37 16 37 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.04 0.75 7.54 -51.93 -0.39 0.36 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.05 1.16 6.95 -51.93 -0.36 0.80 16 42 H 0.00 0.06 8.01 -51.93 -0.42 -0.35 16 43 H 0.01 0.18 8.00 -51.93 -0.42 -0.23 16 44 H 0.27 8.20 7.22 -40.82 -0.29 7.90 16 45 H 0.09 1.41 5.70 -51.93 -0.30 1.11 16 46 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.08 0.98 7.51 -51.93 -0.39 0.59 16 48 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 382.06 15.07 5.76 5.76 Total: -1.00 -35.11 382.06 -11.02 -46.13 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -8.60 Total: -2.26 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: -0.25 Total: -23.14 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: -0.23 Total: -43.91 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -2.03 Total: -24.47 kcal Atomic # 14 Polarization: 25.56 SS G_CDS: -5.08 Total: 20.48 kcal Atomic # 16 Polarization: 21.99 SS G_CDS: -0.58 Total: 21.41 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.11 -11.02 -46.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602658444.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.120 kcal (2) G-P(sol) polarization free energy of solvation -35.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds