Wall clock time and date at job start Tue Mar 31 2020 12:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 S 1.81395 * 109.47128 * 2 1 4 4 O 1.42106 * 110.54441 * 68.37900 * 3 2 1 5 5 O 1.42101 * 110.54684 * 291.62843 * 3 2 1 6 6 N 1.65598 * 104.44942 * 180.02562 * 3 2 1 7 7 C 1.46502 * 120.00235 * 65.00275 * 6 3 2 8 8 C 1.53116 * 109.52325 * 214.99878 * 7 6 3 9 9 C 1.53040 * 109.27607 * 182.37210 * 8 7 6 10 10 N 1.46853 * 109.52044 * 59.18022 * 9 8 7 11 11 C 1.46898 * 110.99552 * 174.15636 * 10 9 8 12 12 C 1.53006 * 109.47025 * 176.22316 * 11 10 9 13 13 H 1.09011 * 109.46853 * 301.94935 * 12 11 10 14 14 C 1.53002 * 109.47145 * 61.94494 * 12 11 10 15 15 C 1.52992 * 109.47290 * 181.94775 * 12 11 10 16 16 C 1.50698 * 109.47069 * 174.99569 * 15 12 11 17 17 H 1.07997 * 120.00232 * 0.02562 * 16 15 12 18 18 C 1.37889 * 120.00230 * 179.97438 * 16 15 12 19 19 N 1.31512 * 119.99366 * 359.72767 * 18 16 15 20 20 Si 1.86792 * 119.99968 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46856 * 269.72152 * 20 18 16 22 22 H 1.48497 * 109.47585 * 29.72438 * 20 18 16 23 23 H 1.48505 * 109.47083 * 149.72682 * 20 18 16 24 24 C 1.46838 * 111.19851 * 298.25803 * 10 9 8 25 25 C 1.53032 * 109.52628 * 61.74563 * 24 10 9 26 26 H 1.09004 * 109.47517 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47277 * 299.99583 * 1 2 3 28 28 H 1.08999 * 109.47446 * 59.99622 * 1 2 3 29 29 H 1.09002 * 109.46769 * 240.00412 * 2 1 3 30 30 H 1.08999 * 109.47446 * 120.00378 * 2 1 3 31 31 H 0.97002 * 120.00377 * 245.00271 * 6 3 2 32 32 H 1.08997 * 109.52069 * 335.12858 * 7 6 3 33 33 H 1.09004 * 109.50275 * 62.43782 * 8 7 6 34 34 H 1.08990 * 109.53935 * 302.33411 * 8 7 6 35 35 H 1.09000 * 109.46840 * 299.16903 * 9 8 7 36 36 H 1.09001 * 109.45035 * 179.18974 * 9 8 7 37 37 H 1.08999 * 109.47594 * 56.22550 * 11 10 9 38 38 H 1.08999 * 109.47830 * 296.22071 * 11 10 9 39 39 H 1.08996 * 109.46939 * 300.00301 * 14 12 11 40 40 H 1.08999 * 109.46860 * 60.00105 * 14 12 11 41 41 H 1.08995 * 109.47121 * 180.02562 * 14 12 11 42 42 H 1.09004 * 109.47196 * 55.00411 * 15 12 11 43 43 H 1.08996 * 109.47636 * 295.00191 * 15 12 11 44 44 H 0.96998 * 120.00518 * 0.27602 * 19 18 16 45 45 H 1.09001 * 109.45909 * 181.76128 * 24 10 9 46 46 H 1.09004 * 109.46457 * 301.72412 * 24 10 9 47 47 H 1.09002 * 109.50627 * 180.88158 * 25 24 10 48 48 H 1.08995 * 109.50565 * 60.75804 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 8 1.8386 2.3438 1.2371 5 8 1.8384 2.3439 -1.2369 6 7 3.7842 1.5653 -0.0007 7 6 4.4666 0.9672 -1.1510 8 6 5.6813 0.1701 -0.6677 9 6 6.4234 -0.4027 -1.8773 10 7 6.8526 0.6942 -2.7543 11 6 7.6876 0.1929 -3.8541 12 6 8.0364 1.3467 -4.7964 13 1 7.1185 1.7966 -5.1753 14 6 8.8443 2.4001 -4.0358 15 6 8.8653 0.8159 -5.9677 16 6 9.1045 1.9264 -6.9578 17 1 8.7056 2.9124 -6.7703 18 6 9.8336 1.6841 -8.1028 19 7 10.3248 0.4851 -8.3280 20 14 10.1307 3.0609 -9.3298 21 1 9.0369 3.0734 -10.3341 22 1 10.1619 4.3624 -8.6155 23 1 11.4296 2.8412 -10.0153 24 6 5.7000 1.4448 -3.2685 25 6 4.9363 2.0729 -2.1005 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 4.2988 1.8763 0.7605 32 1 3.7805 0.3030 -1.6765 33 1 5.3492 -0.6452 -0.0249 34 1 6.3485 0.8258 -0.1085 35 1 5.7601 -1.0697 -2.4281 36 1 7.2970 -0.9588 -1.5372 37 1 7.1419 -0.5735 -4.4045 38 1 8.6045 -0.2347 -3.4484 39 1 8.2537 2.7782 -3.2014 40 1 9.7620 1.9503 -3.6570 41 1 9.0924 3.2222 -4.7070 42 1 8.3262 0.0039 -6.4558 43 1 9.8217 0.4464 -5.5980 44 1 10.1708 -0.2297 -7.6908 45 1 6.0482 2.2304 -3.9391 46 1 5.0400 0.7692 -3.8127 47 1 4.0720 2.6169 -2.4814 48 1 5.5916 2.7591 -1.5642 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602658444.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:21 Heat of formation + Delta-G solvation = -121.252876 kcal Electronic energy + Delta-G solvation = -25631.113463 eV Core-core repulsion = 22038.953864 eV Total energy + Delta-G solvation = -3592.159599 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.46301 -38.23184 -37.75208 -37.02522 -35.89254 -34.14023 -34.04751 -31.85049 -31.38863 -28.41780 -27.12212 -25.14155 -24.97812 -24.23120 -23.44838 -21.22752 -20.47191 -20.19561 -18.91805 -18.67383 -17.78670 -17.27193 -16.72249 -16.15141 -16.11288 -15.93330 -15.63667 -15.25515 -15.16669 -14.96544 -14.67435 -14.47530 -14.11877 -13.75087 -13.59185 -13.43311 -13.26142 -13.20021 -13.15113 -13.08676 -13.01311 -12.84891 -12.53390 -12.44082 -12.30226 -12.13561 -12.07332 -11.95052 -11.75342 -11.66238 -11.37638 -11.35034 -11.21359 -10.54731 -10.51387 -10.31227 -9.21687 -8.64774 -6.33440 -0.73280 1.51857 1.60850 1.73024 1.78364 2.57116 2.80059 2.95916 3.19051 3.22937 3.62618 3.72607 3.81739 3.89456 4.00360 4.04591 4.15179 4.27123 4.33429 4.35843 4.41219 4.44021 4.54539 4.65176 4.70026 4.80880 4.81479 4.82943 4.88024 4.90839 4.99275 5.02019 5.08317 5.09418 5.18404 5.25990 5.33830 5.39414 5.42978 5.49320 5.66465 6.02814 6.08703 6.14989 6.22888 6.27552 6.63968 7.46756 8.76106 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.025884 B = 0.002434 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.472617 B =11499.735486 C =11818.303858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.611 4.611 3 S 2.609 3.391 4 O -0.996 6.996 5 O -0.995 6.995 6 N -1.107 6.107 7 C 0.153 3.847 8 C -0.111 4.111 9 C 0.049 3.951 10 N -0.536 5.536 11 C 0.073 3.927 12 C -0.073 4.073 13 H 0.055 0.945 14 C -0.111 4.111 15 C 0.017 3.983 16 C -0.603 4.603 17 H 0.050 0.950 18 C -0.042 4.042 19 N -0.942 5.942 20 Si 1.116 2.884 21 H -0.274 1.274 22 H -0.270 1.270 23 H -0.283 1.283 24 C 0.050 3.950 25 C -0.130 4.130 26 H 0.102 0.898 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.150 0.850 30 H 0.161 0.839 31 H 0.425 0.575 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.079 0.921 35 H 0.039 0.961 36 H 0.085 0.915 37 H 0.021 0.979 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.037 0.963 41 H 0.033 0.967 42 H -0.018 1.018 43 H -0.012 1.012 44 H 0.255 0.745 45 H 0.069 0.931 46 H 0.031 0.969 47 H 0.070 0.930 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.943 -4.232 21.976 28.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.744 4.744 3 S 2.705 3.295 4 O -0.987 6.987 5 O -0.985 6.985 6 N -0.865 5.865 7 C 0.045 3.955 8 C -0.150 4.150 9 C -0.079 4.079 10 N -0.261 5.261 11 C -0.055 4.055 12 C -0.091 4.091 13 H 0.073 0.927 14 C -0.168 4.168 15 C -0.021 4.021 16 C -0.641 4.641 17 H 0.068 0.932 18 C -0.239 4.239 19 N -0.580 5.580 20 Si 0.938 3.062 21 H -0.199 1.199 22 H -0.195 1.195 23 H -0.209 1.209 24 C -0.079 4.079 25 C -0.170 4.170 26 H 0.121 0.879 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.168 0.832 30 H 0.179 0.821 31 H 0.261 0.739 32 H 0.113 0.887 33 H 0.122 0.878 34 H 0.098 0.902 35 H 0.057 0.943 36 H 0.103 0.897 37 H 0.039 0.961 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.000 1.000 43 H 0.006 0.994 44 H 0.064 0.936 45 H 0.087 0.913 46 H 0.050 0.950 47 H 0.088 0.912 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.537 -2.771 20.705 27.274 hybrid contribution -0.527 -1.550 0.807 1.825 sum -18.064 -4.321 21.511 28.420 Atomic orbital electron populations 1.21688 0.90402 1.06439 1.03570 1.30321 1.07297 1.22686 1.14057 1.04857 0.73219 0.78614 0.72770 1.93556 1.83758 1.75112 1.46269 1.93576 1.83954 1.74168 1.46808 1.55415 1.25257 1.77989 1.27859 1.20886 0.95460 0.93739 0.85387 1.21865 0.95364 1.00618 0.97165 1.22205 0.99660 0.92060 0.93978 1.61982 1.19598 1.25521 1.18971 1.22011 0.96874 0.95469 0.91141 1.21027 0.98043 0.95856 0.94199 0.92719 1.21459 0.98838 0.97786 0.98755 1.19180 0.93764 0.95260 0.93852 1.22447 1.36532 0.97721 1.07412 0.93212 1.27349 0.93352 1.02335 1.00887 1.70884 1.45556 1.02661 1.38920 0.82944 0.77017 0.72378 0.73879 1.19929 1.19503 1.20902 1.22144 0.91051 0.97879 0.96830 1.22086 0.99847 0.98800 0.96246 0.87920 0.90827 0.91255 0.83161 0.82139 0.73929 0.88737 0.87792 0.90195 0.94317 0.89701 0.96061 0.91117 0.91424 0.94373 0.94827 0.99970 0.99386 0.93579 0.91259 0.95033 0.91158 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.92 71.98 0.71 -0.54 16 2 C -0.61 -4.13 6.68 71.98 0.48 -3.65 16 3 S 2.61 40.25 5.38 -56.49 -0.30 39.95 16 4 O -1.00 -21.99 18.08 -127.65 -2.31 -24.30 16 5 O -1.00 -23.83 17.19 -127.65 -2.19 -26.02 16 6 N -1.11 -13.85 5.37 -169.05 -0.91 -14.76 16 7 C 0.15 2.22 2.62 45.07 0.12 2.33 16 8 C -0.11 -1.38 5.63 30.65 0.17 -1.21 16 9 C 0.05 0.90 5.46 86.33 0.47 1.37 16 10 N -0.54 -13.81 4.08 -896.36 -3.66 -17.47 16 11 C 0.07 2.38 4.55 86.31 0.39 2.77 16 12 C -0.07 -2.94 1.85 -10.79 -0.02 -2.96 16 13 H 0.05 2.28 6.07 -2.38 -0.01 2.27 16 14 C -0.11 -4.27 8.79 71.98 0.63 -3.63 16 15 C 0.02 0.88 3.76 29.84 0.11 0.99 16 16 C -0.60 -34.62 8.41 25.60 0.22 -34.40 16 17 H 0.05 2.80 7.06 -2.91 -0.02 2.78 16 18 C -0.04 -2.49 5.46 84.66 0.46 -2.03 16 19 N -0.94 -59.22 13.65 21.45 0.29 -58.93 16 20 Si 1.12 51.33 29.90 68.60 2.05 53.38 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 23 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 24 C 0.05 1.28 4.97 86.33 0.43 1.71 16 25 C -0.13 -2.79 5.70 30.65 0.17 -2.62 16 26 H 0.10 0.42 8.14 -2.38 -0.02 0.41 16 27 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.15 0.54 7.45 -2.39 -0.02 0.52 16 30 H 0.16 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.42 4.19 8.80 -96.74 -0.85 3.34 16 32 H 0.09 1.07 7.16 -2.39 -0.02 1.05 16 33 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.08 1.47 8.12 -2.39 -0.02 1.45 16 37 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.07 2.26 7.54 -2.39 -0.02 2.24 16 40 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.03 1.40 6.95 -2.39 -0.02 1.39 16 42 H -0.02 -1.00 8.01 -2.38 -0.02 -1.02 16 43 H -0.01 -0.67 8.00 -2.39 -0.02 -0.69 16 44 H 0.25 16.18 7.22 -92.71 -0.67 15.51 16 45 H 0.07 2.11 5.70 -2.39 -0.01 2.10 16 46 H 0.03 0.81 8.14 -2.38 -0.02 0.79 16 47 H 0.07 1.68 7.51 -2.39 -0.02 1.66 16 48 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -78.11 382.06 -2.50 -80.61 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 0.17 Total: 9.40 kcal Atomic # 6 Polarization: -46.22 SS G_CDS: 4.35 Total: -41.87 kcal Atomic # 7 Polarization: -86.88 SS G_CDS: -4.27 Total: -91.15 kcal Atomic # 8 Polarization: -45.82 SS G_CDS: -4.50 Total: -50.32 kcal Atomic # 14 Polarization: 51.33 SS G_CDS: 2.05 Total: 53.38 kcal Atomic # 16 Polarization: 40.25 SS G_CDS: -0.30 Total: 39.95 kcal Total: -78.11 -2.50 -80.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602658444.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.645 kcal (2) G-P(sol) polarization free energy of solvation -78.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds