Wall clock time and date at job start Tue Mar 31 2020 12:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 S 1.81397 * 109.46963 * 2 1 4 4 O 1.42097 * 110.54707 * 68.37045 * 3 2 1 5 5 O 1.42102 * 110.54158 * 291.62301 * 3 2 1 6 6 N 1.65602 * 104.45032 * 180.02562 * 3 2 1 7 7 C 1.46921 * 120.63239 * 89.99622 * 6 3 2 8 8 C 1.53194 * 108.77604 * 233.58826 * 7 6 3 9 9 C 1.53037 * 109.31192 * 305.36603 * 8 7 6 10 10 N 1.46898 * 109.46016 * 181.38430 * 9 8 7 11 11 C 1.46903 * 111.00043 * 154.97050 * 10 9 8 12 12 C 1.52999 * 109.47368 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.46617 * 55.00168 * 12 11 10 14 14 C 1.53005 * 109.47107 * 295.00343 * 12 11 10 15 15 C 1.53002 * 109.47329 * 174.99975 * 12 11 10 16 16 C 1.50696 * 109.46919 * 185.00033 * 15 12 11 17 17 H 1.07999 * 120.00202 * 359.97438 * 16 15 12 18 18 C 1.37884 * 119.99746 * 180.02562 * 16 15 12 19 19 N 1.31514 * 119.99573 * 0.27650 * 18 16 15 20 20 Si 1.86800 * 119.99781 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47035 * 60.00183 * 20 18 16 22 22 H 1.48503 * 109.46845 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47237 * 299.99939 * 20 18 16 24 24 C 1.53039 * 109.53072 * 61.37041 * 9 8 7 25 25 C 1.46923 * 120.62671 * 269.97457 * 6 3 2 26 26 H 1.08996 * 109.47061 * 300.00367 * 1 2 3 27 27 H 1.08997 * 109.47100 * 60.00167 * 1 2 3 28 28 H 1.08997 * 109.46924 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47061 * 239.99633 * 2 1 3 30 30 H 1.09004 * 109.46804 * 119.99000 * 2 1 3 31 31 H 1.09001 * 109.58892 * 113.79654 * 7 6 3 32 32 H 1.09007 * 109.70466 * 353.44807 * 7 6 3 33 33 H 1.09004 * 109.49805 * 185.41614 * 8 7 6 34 34 H 1.09003 * 109.49649 * 65.31641 * 8 7 6 35 35 H 1.09002 * 109.46114 * 301.36109 * 9 8 7 36 36 H 1.00899 * 110.99939 * 278.92162 * 10 9 8 37 37 H 1.09008 * 109.46872 * 60.00082 * 11 10 9 38 38 H 1.09005 * 109.47368 * 300.00424 * 11 10 9 39 39 H 1.09001 * 109.47004 * 59.99757 * 14 12 11 40 40 H 1.08997 * 109.47105 * 179.97438 * 14 12 11 41 41 H 1.08997 * 109.46686 * 299.99929 * 14 12 11 42 42 H 1.09000 * 109.46497 * 65.00298 * 15 12 11 43 43 H 1.08999 * 109.46623 * 305.00362 * 15 12 11 44 44 H 0.97001 * 120.00651 * 359.71956 * 19 18 16 45 45 H 1.09001 * 109.49887 * 58.57505 * 24 9 8 46 46 H 1.09001 * 109.50190 * 178.67705 * 24 9 8 47 47 H 1.09000 * 109.58994 * 246.19944 * 25 6 3 48 48 H 1.09002 * 109.59003 * 6.48437 * 25 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8385 2.3439 1.2369 5 8 1.8386 2.3438 -1.2370 6 7 3.7843 1.5654 -0.0007 7 6 4.5295 1.5000 -1.2652 8 6 5.4157 0.2504 -1.2513 9 6 6.2988 0.2701 -0.0016 10 7 7.1735 -0.9101 -0.0018 11 6 8.3898 -0.6641 0.7844 12 6 9.2734 -1.9129 0.7613 13 1 9.4737 -2.1971 -0.2717 14 6 8.5547 -3.0594 1.4755 15 6 10.5944 -1.6163 1.4740 16 6 11.5125 -2.8043 1.3449 17 1 11.1863 -3.6832 0.8086 18 6 12.7686 -2.7697 1.9125 19 7 13.1633 -1.7019 2.5710 20 14 13.9064 -4.2426 1.7531 21 1 14.1691 -4.5120 0.3165 22 1 15.1886 -3.9546 2.4447 23 1 13.2663 -5.4317 2.3708 24 6 5.4165 0.2505 1.2487 25 6 4.5305 1.5002 1.2632 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5137 0.8901 31 1 5.1524 2.3885 -1.3687 32 1 3.8316 1.4438 -2.1007 33 1 6.0449 0.2407 -2.1413 34 1 4.7879 -0.6406 -1.2392 35 1 6.9082 1.1738 -0.0018 36 1 6.6826 -1.7240 0.3367 37 1 8.1162 -0.4319 1.8137 38 1 8.9361 0.1760 0.3554 39 1 7.6136 -3.2707 0.9677 40 1 9.1839 -3.9492 1.4587 41 1 8.3543 -2.7751 2.5085 42 1 10.4018 -1.4188 2.5285 43 1 11.0637 -0.7433 1.0205 44 1 12.5724 -0.9372 2.6541 45 1 4.7887 -0.6405 1.2371 46 1 6.0462 0.2408 2.1383 47 1 5.1535 2.3888 1.3661 48 1 3.8316 1.4455 2.0979 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619568624.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:00 Heat of formation + Delta-G solvation = -98.128075 kcal Electronic energy + Delta-G solvation = -25459.098356 eV Core-core repulsion = 21867.941524 eV Total energy + Delta-G solvation = -3591.156832 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.26621 -37.53165 -36.72341 -36.30110 -34.34403 -33.61778 -32.34787 -31.42793 -29.95390 -26.56153 -25.62520 -24.58774 -23.67772 -23.41511 -22.14845 -20.71334 -19.42028 -19.04342 -18.21172 -16.85224 -16.75590 -16.63937 -15.46289 -15.25237 -15.07524 -14.71770 -14.63147 -14.29244 -13.92816 -13.76150 -13.70351 -13.43494 -13.11097 -12.99731 -12.98853 -12.61722 -12.45856 -12.33552 -12.15440 -12.06281 -11.77106 -11.59805 -11.54759 -11.47796 -11.09844 -11.03756 -10.97975 -10.79785 -10.69511 -10.20329 -10.08663 -9.88963 -9.51103 -9.35975 -8.49303 -8.31318 -8.23663 -6.33621 -4.01957 -0.15806 2.21809 3.43925 3.44073 3.45968 3.64542 3.70135 4.04504 4.17068 4.27803 4.29177 4.56199 4.59914 4.68236 4.78394 4.80818 5.03216 5.05510 5.06783 5.20438 5.28537 5.39498 5.40609 5.42371 5.46564 5.49029 5.62557 5.64661 5.69103 5.87752 5.87817 5.91605 6.02175 6.12945 6.26421 6.32541 6.41847 6.78198 6.97810 7.00132 7.23186 7.40246 7.51141 7.59982 8.25112 8.48839 8.91202 9.69455 11.06738 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.034637 B = 0.002207 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.184283 B =12683.782392 C =12826.870130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.633 4.633 3 S 2.608 3.392 4 O -0.955 6.955 5 O -0.955 6.955 6 N -0.999 5.999 7 C 0.120 3.880 8 C -0.123 4.123 9 C 0.088 3.912 10 N -0.685 5.685 11 C 0.064 3.936 12 C -0.077 4.077 13 H 0.066 0.934 14 C -0.132 4.132 15 C 0.015 3.985 16 C -0.594 4.594 17 H 0.049 0.951 18 C 0.012 3.988 19 N -0.915 5.915 20 Si 1.067 2.933 21 H -0.288 1.288 22 H -0.283 1.283 23 H -0.289 1.289 24 C -0.167 4.167 25 C 0.125 3.875 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.338 0.662 37 H 0.024 0.976 38 H 0.066 0.934 39 H 0.032 0.968 40 H 0.063 0.937 41 H 0.039 0.961 42 H 0.004 0.996 43 H 0.005 0.995 44 H 0.268 0.732 45 H 0.067 0.933 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.207 4.565 -5.780 26.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.763 4.763 3 S 2.701 3.299 4 O -0.945 6.945 5 O -0.945 6.945 6 N -0.837 5.837 7 C -0.005 4.005 8 C -0.162 4.162 9 C -0.023 4.023 10 N -0.315 5.315 11 C -0.065 4.065 12 C -0.096 4.096 13 H 0.085 0.915 14 C -0.190 4.190 15 C -0.023 4.023 16 C -0.633 4.633 17 H 0.068 0.932 18 C -0.191 4.191 19 N -0.552 5.552 20 Si 0.896 3.104 21 H -0.215 1.215 22 H -0.209 1.209 23 H -0.215 1.215 24 C -0.208 4.208 25 C 0.000 4.000 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.150 0.850 30 H 0.149 0.851 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.157 0.843 37 H 0.042 0.958 38 H 0.084 0.916 39 H 0.051 0.949 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.023 0.977 43 H 0.024 0.976 44 H 0.078 0.922 45 H 0.085 0.915 46 H 0.096 0.904 47 H 0.094 0.906 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -23.867 4.959 -5.973 25.098 hybrid contribution -1.658 -0.319 0.584 1.786 sum -25.525 4.640 -5.389 26.497 Atomic orbital electron populations 1.21507 0.90560 1.05126 1.03395 1.30581 1.07133 1.26836 1.11707 1.05175 0.72967 0.77517 0.74255 1.93595 1.83208 1.72491 1.45239 1.93594 1.83209 1.72488 1.45197 1.57744 1.24021 1.89519 1.12366 1.21504 0.95712 0.99106 0.84194 1.21936 0.97894 0.97238 0.99178 1.21516 0.92887 0.94965 0.92926 1.60671 1.07526 1.04944 1.58348 1.22176 0.90271 0.99715 0.94317 1.21084 0.95628 0.92559 1.00364 0.91539 1.21724 0.98403 1.00072 0.98791 1.19232 0.91354 0.97144 0.94521 1.22024 1.01424 1.01668 1.38139 0.93247 1.25827 0.97426 1.02147 0.93705 1.70782 1.39645 1.05283 1.39469 0.83569 0.76085 0.74549 0.76236 1.21478 1.20855 1.21534 1.22723 0.99289 0.98288 1.00488 1.21389 0.95645 0.98699 0.84313 0.91001 0.90969 0.89962 0.84997 0.85094 0.90647 0.89045 0.89679 0.91724 0.90283 0.84267 0.95823 0.91580 0.94900 0.91756 0.94153 0.97732 0.97630 0.92191 0.91470 0.90446 0.90615 0.89242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.92 37.16 0.37 -0.41 16 2 C -0.63 -3.51 6.90 37.16 0.26 -3.25 16 3 S 2.61 22.70 5.41 -107.50 -0.58 22.12 16 4 O -0.95 -11.18 16.72 -57.54 -0.96 -12.14 16 5 O -0.95 -10.96 16.72 -57.54 -0.96 -11.92 16 6 N -1.00 -8.18 3.22 -113.52 -0.37 -8.55 16 7 C 0.12 0.94 6.31 -3.71 -0.02 0.92 16 8 C -0.12 -1.03 5.69 -26.61 -0.15 -1.18 16 9 C 0.09 0.89 2.43 -67.67 -0.16 0.73 16 10 N -0.68 -8.82 6.25 -106.68 -0.67 -9.49 16 11 C 0.06 1.02 4.94 -3.82 -0.02 1.00 16 12 C -0.08 -1.53 2.54 -90.62 -0.23 -1.76 16 13 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 14 C -0.13 -2.38 8.77 37.16 0.33 -2.06 16 15 C 0.01 0.37 3.76 -27.88 -0.10 0.27 16 16 C -0.59 -16.61 8.41 -34.44 -0.29 -16.90 16 17 H 0.05 1.36 7.06 -52.49 -0.37 0.99 16 18 C 0.01 0.35 5.46 -17.82 -0.10 0.26 16 19 N -0.92 -28.02 13.65 55.43 0.76 -27.27 16 20 Si 1.07 25.25 29.90 -169.99 -5.08 20.17 16 21 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 24 C -0.17 -1.46 5.33 -26.61 -0.14 -1.60 16 25 C 0.13 1.03 6.32 -3.71 -0.02 1.01 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.13 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.13 0.57 8.14 -51.92 -0.42 0.15 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.64 7.11 -51.93 -0.37 0.27 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.87 7.80 -51.93 -0.40 0.47 16 36 H 0.34 4.14 6.73 -39.29 -0.26 3.88 16 37 H 0.02 0.37 7.41 -51.92 -0.38 -0.01 16 38 H 0.07 1.11 8.06 -51.93 -0.42 0.69 16 39 H 0.03 0.48 6.68 -51.93 -0.35 0.14 16 40 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 41 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.00 0.12 8.00 -51.93 -0.42 -0.30 16 43 H 0.01 0.14 8.01 -51.93 -0.42 -0.27 16 44 H 0.27 8.16 7.22 -40.82 -0.29 7.86 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.08 0.74 7.42 -51.93 -0.39 0.35 16 47 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.09 0.68 7.10 -51.93 -0.37 0.31 16 LS Contribution 383.23 15.07 5.78 5.78 Total: -1.00 -34.30 383.23 -11.05 -45.35 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -8.67 Total: -1.07 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: -0.29 Total: -22.98 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: -0.28 Total: -45.31 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -1.92 Total: -24.06 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.08 Total: 20.17 kcal Atomic # 16 Polarization: 22.70 SS G_CDS: -0.58 Total: 22.12 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.30 -11.05 -45.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619568624.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.773 kcal (2) G-P(sol) polarization free energy of solvation -34.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds