Wall clock time and date at job start Tue Mar 31 2020 12:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 S 1.81397 * 109.46963 * 2 1 4 4 O 1.42097 * 110.54707 * 68.37045 * 3 2 1 5 5 O 1.42102 * 110.54158 * 291.62301 * 3 2 1 6 6 N 1.65602 * 104.45032 * 180.02562 * 3 2 1 7 7 C 1.46921 * 120.63239 * 89.99622 * 6 3 2 8 8 C 1.53194 * 108.77604 * 233.58826 * 7 6 3 9 9 C 1.53037 * 109.31192 * 305.36603 * 8 7 6 10 10 N 1.46898 * 109.46016 * 181.38430 * 9 8 7 11 11 C 1.46903 * 111.00043 * 154.97050 * 10 9 8 12 12 C 1.52999 * 109.47368 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.46617 * 55.00168 * 12 11 10 14 14 C 1.53005 * 109.47107 * 295.00343 * 12 11 10 15 15 C 1.53002 * 109.47329 * 174.99975 * 12 11 10 16 16 C 1.50696 * 109.46919 * 185.00033 * 15 12 11 17 17 H 1.07999 * 120.00202 * 359.97438 * 16 15 12 18 18 C 1.37884 * 119.99746 * 180.02562 * 16 15 12 19 19 N 1.31514 * 119.99573 * 0.27650 * 18 16 15 20 20 Si 1.86800 * 119.99781 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47035 * 60.00183 * 20 18 16 22 22 H 1.48503 * 109.46845 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47237 * 299.99939 * 20 18 16 24 24 C 1.53039 * 109.53072 * 61.37041 * 9 8 7 25 25 C 1.46923 * 120.62671 * 269.97457 * 6 3 2 26 26 H 1.08996 * 109.47061 * 300.00367 * 1 2 3 27 27 H 1.08997 * 109.47100 * 60.00167 * 1 2 3 28 28 H 1.08997 * 109.46924 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47061 * 239.99633 * 2 1 3 30 30 H 1.09004 * 109.46804 * 119.99000 * 2 1 3 31 31 H 1.09001 * 109.58892 * 113.79654 * 7 6 3 32 32 H 1.09007 * 109.70466 * 353.44807 * 7 6 3 33 33 H 1.09004 * 109.49805 * 185.41614 * 8 7 6 34 34 H 1.09003 * 109.49649 * 65.31641 * 8 7 6 35 35 H 1.09002 * 109.46114 * 301.36109 * 9 8 7 36 36 H 1.00899 * 110.99939 * 278.92162 * 10 9 8 37 37 H 1.09008 * 109.46872 * 60.00082 * 11 10 9 38 38 H 1.09005 * 109.47368 * 300.00424 * 11 10 9 39 39 H 1.09001 * 109.47004 * 59.99757 * 14 12 11 40 40 H 1.08997 * 109.47105 * 179.97438 * 14 12 11 41 41 H 1.08997 * 109.46686 * 299.99929 * 14 12 11 42 42 H 1.09000 * 109.46497 * 65.00298 * 15 12 11 43 43 H 1.08999 * 109.46623 * 305.00362 * 15 12 11 44 44 H 0.97001 * 120.00651 * 359.71956 * 19 18 16 45 45 H 1.09001 * 109.49887 * 58.57505 * 24 9 8 46 46 H 1.09001 * 109.50190 * 178.67705 * 24 9 8 47 47 H 1.09000 * 109.58994 * 246.19944 * 25 6 3 48 48 H 1.09002 * 109.59003 * 6.48437 * 25 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8385 2.3439 1.2369 5 8 1.8386 2.3438 -1.2370 6 7 3.7843 1.5654 -0.0007 7 6 4.5295 1.5000 -1.2652 8 6 5.4157 0.2504 -1.2513 9 6 6.2988 0.2701 -0.0016 10 7 7.1735 -0.9101 -0.0018 11 6 8.3898 -0.6641 0.7844 12 6 9.2734 -1.9129 0.7613 13 1 9.4737 -2.1971 -0.2717 14 6 8.5547 -3.0594 1.4755 15 6 10.5944 -1.6163 1.4740 16 6 11.5125 -2.8043 1.3449 17 1 11.1863 -3.6832 0.8086 18 6 12.7686 -2.7697 1.9125 19 7 13.1633 -1.7019 2.5710 20 14 13.9064 -4.2426 1.7531 21 1 14.1691 -4.5120 0.3165 22 1 15.1886 -3.9546 2.4447 23 1 13.2663 -5.4317 2.3708 24 6 5.4165 0.2505 1.2487 25 6 4.5305 1.5002 1.2632 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5137 0.8901 31 1 5.1524 2.3885 -1.3687 32 1 3.8316 1.4438 -2.1007 33 1 6.0449 0.2407 -2.1413 34 1 4.7879 -0.6406 -1.2392 35 1 6.9082 1.1738 -0.0018 36 1 6.6826 -1.7240 0.3367 37 1 8.1162 -0.4319 1.8137 38 1 8.9361 0.1760 0.3554 39 1 7.6136 -3.2707 0.9677 40 1 9.1839 -3.9492 1.4587 41 1 8.3543 -2.7751 2.5085 42 1 10.4018 -1.4188 2.5285 43 1 11.0637 -0.7433 1.0205 44 1 12.5724 -0.9372 2.6541 45 1 4.7887 -0.6405 1.2371 46 1 6.0462 0.2408 2.1383 47 1 5.1535 2.3888 1.3661 48 1 3.8316 1.4455 2.0979 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619568624.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:59 Heat of formation + Delta-G solvation = -122.633051 kcal Electronic energy + Delta-G solvation = -25460.160971 eV Core-core repulsion = 21867.941524 eV Total energy + Delta-G solvation = -3592.219448 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.07499 -38.29812 -38.05030 -37.08170 -35.80259 -34.11134 -34.01765 -32.09502 -31.05939 -28.40997 -26.96301 -25.23492 -24.77795 -24.28862 -23.52919 -21.51128 -20.82783 -19.86007 -18.90418 -18.87265 -17.49796 -17.29360 -16.62163 -16.20056 -15.80441 -15.62608 -15.61272 -15.33621 -15.21977 -15.09454 -14.79214 -14.20475 -14.14939 -14.08012 -13.64830 -13.48109 -13.43494 -13.38213 -13.26772 -13.14848 -12.92275 -12.87645 -12.51670 -12.43213 -12.34996 -12.19325 -11.99224 -11.92448 -11.81555 -11.58682 -11.56249 -11.41896 -11.18965 -10.54648 -10.51267 -10.03375 -9.28547 -8.64340 -6.33463 -0.79210 1.52956 1.57878 1.61413 1.80189 2.58506 2.83154 3.08091 3.16584 3.19508 3.54217 3.72844 3.83946 3.90197 4.01227 4.12951 4.16192 4.21147 4.34177 4.34996 4.36667 4.39337 4.57226 4.64648 4.67505 4.75082 4.79126 4.80123 4.82547 4.87452 4.94627 5.02647 5.04830 5.07551 5.18522 5.22531 5.26544 5.30772 5.35132 5.51439 5.60277 5.67235 6.03480 6.15431 6.23589 6.54337 6.63507 7.47424 8.76260 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.034637 B = 0.002207 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.184283 B =12683.782392 C =12826.870130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.610 4.610 3 S 2.607 3.393 4 O -0.992 6.992 5 O -0.989 6.989 6 N -0.999 5.999 7 C 0.120 3.880 8 C -0.115 4.115 9 C 0.085 3.915 10 N -0.683 5.683 11 C 0.079 3.921 12 C -0.070 4.070 13 H 0.054 0.946 14 C -0.125 4.125 15 C 0.016 3.984 16 C -0.604 4.604 17 H 0.052 0.948 18 C -0.044 4.044 19 N -0.943 5.943 20 Si 1.115 2.885 21 H -0.270 1.270 22 H -0.286 1.286 23 H -0.268 1.268 24 C -0.160 4.160 25 C 0.125 3.875 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.101 0.899 29 H 0.154 0.846 30 H 0.151 0.849 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.346 0.654 37 H 0.026 0.974 38 H 0.052 0.948 39 H 0.071 0.929 40 H 0.041 0.959 41 H 0.040 0.960 42 H -0.014 1.014 43 H -0.019 1.019 44 H 0.254 0.746 45 H 0.085 0.915 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.978 2.431 -6.506 27.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.743 4.743 3 S 2.705 3.295 4 O -0.983 6.983 5 O -0.980 6.980 6 N -0.837 5.837 7 C -0.005 4.005 8 C -0.154 4.154 9 C -0.025 4.025 10 N -0.314 5.314 11 C -0.050 4.050 12 C -0.089 4.089 13 H 0.073 0.927 14 C -0.182 4.182 15 C -0.022 4.022 16 C -0.642 4.642 17 H 0.071 0.929 18 C -0.241 4.241 19 N -0.581 5.581 20 Si 0.937 3.063 21 H -0.195 1.195 22 H -0.212 1.212 23 H -0.193 1.193 24 C -0.201 4.201 25 C -0.001 4.001 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.120 0.880 29 H 0.172 0.828 30 H 0.169 0.831 31 H 0.089 0.911 32 H 0.121 0.879 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.166 0.834 37 H 0.044 0.956 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.004 0.996 43 H -0.001 1.001 44 H 0.063 0.937 45 H 0.104 0.896 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -25.661 2.871 -6.712 26.679 hybrid contribution -1.174 0.357 0.789 1.459 sum -26.834 3.228 -5.923 27.669 Atomic orbital electron populations 1.21690 0.90280 1.06422 1.03585 1.30379 1.07269 1.22835 1.13847 1.05005 0.72797 0.78902 0.72785 1.93544 1.83691 1.74654 1.46400 1.93545 1.83644 1.74577 1.46190 1.57615 1.23832 1.89841 1.12367 1.21540 0.95828 0.98762 0.84417 1.21862 0.97639 0.98118 0.97797 1.21589 0.92852 0.93244 0.94823 1.60593 1.07049 1.06323 1.57429 1.21822 0.91131 0.97179 0.94900 1.20904 0.93961 0.95081 0.98916 0.92735 1.21630 0.99461 0.98012 0.99087 1.19184 0.93881 0.95307 0.93778 1.22441 1.01944 1.02467 1.37313 0.92925 1.27398 0.99718 1.03991 0.92976 1.70919 1.39730 1.05867 1.41553 0.82960 0.74099 0.71925 0.77354 1.19500 1.21197 1.19312 1.22640 0.99085 0.99236 0.99113 1.21387 0.95708 0.98325 0.84669 0.91068 0.90868 0.87993 0.82789 0.83110 0.91080 0.87940 0.90045 0.90089 0.91612 0.83407 0.95630 0.92937 0.91008 0.93976 0.94116 0.99595 1.00111 0.93698 0.89636 0.91297 0.91220 0.88488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 9.92 71.98 0.71 -0.54 16 2 C -0.61 -4.70 6.90 71.98 0.50 -4.20 16 3 S 2.61 41.91 5.41 -56.49 -0.31 41.60 16 4 O -0.99 -22.74 16.72 -127.65 -2.13 -24.87 16 5 O -0.99 -22.03 16.72 -127.65 -2.13 -24.16 16 6 N -1.00 -14.79 3.22 -513.06 -1.65 -16.44 16 7 C 0.12 1.68 6.31 86.36 0.54 2.22 16 8 C -0.11 -1.65 5.69 30.67 0.17 -1.48 16 9 C 0.08 1.59 2.43 44.94 0.11 1.70 16 10 N -0.68 -16.24 6.25 -491.42 -3.07 -19.31 16 11 C 0.08 2.49 4.94 86.30 0.43 2.92 16 12 C -0.07 -2.73 2.54 -10.79 -0.03 -2.76 16 13 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 14 C -0.12 -4.28 8.77 71.98 0.63 -3.65 16 15 C 0.02 0.82 3.76 29.85 0.11 0.93 16 16 C -0.60 -34.11 8.41 25.60 0.22 -33.90 16 17 H 0.05 2.88 7.06 -2.91 -0.02 2.86 16 18 C -0.04 -2.57 5.46 84.66 0.46 -2.11 16 19 N -0.94 -59.07 13.65 21.45 0.29 -58.78 16 20 Si 1.12 50.37 29.90 68.60 2.05 52.43 16 21 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 22 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 24 C -0.16 -2.45 5.33 30.67 0.16 -2.29 16 25 C 0.13 1.89 6.32 86.37 0.55 2.43 16 26 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.15 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.15 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.10 1.24 7.11 -2.38 -0.02 1.22 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.07 1.41 7.80 -2.39 -0.02 1.40 16 36 H 0.35 7.32 6.73 -89.69 -0.60 6.72 16 37 H 0.03 0.80 7.41 -2.38 -0.02 0.78 16 38 H 0.05 1.79 8.06 -2.38 -0.02 1.77 16 39 H 0.07 1.90 6.68 -2.39 -0.02 1.88 16 40 H 0.04 1.62 6.95 -2.39 -0.02 1.60 16 41 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 42 H -0.01 -0.78 8.00 -2.39 -0.02 -0.80 16 43 H -0.02 -1.08 8.01 -2.39 -0.02 -1.10 16 44 H 0.25 16.10 7.22 -92.71 -0.67 15.44 16 45 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.07 1.20 7.42 -2.39 -0.02 1.18 16 47 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.10 1.34 7.10 -2.39 -0.02 1.32 16 Total: -1.00 -75.70 383.23 -1.97 -77.67 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.42 Total: 12.58 kcal Atomic # 6 Polarization: -45.28 SS G_CDS: 4.57 Total: -40.71 kcal Atomic # 7 Polarization: -90.10 SS G_CDS: -4.43 Total: -94.53 kcal Atomic # 8 Polarization: -44.76 SS G_CDS: -4.27 Total: -49.03 kcal Atomic # 14 Polarization: 50.37 SS G_CDS: 2.05 Total: 52.43 kcal Atomic # 16 Polarization: 41.91 SS G_CDS: -0.31 Total: 41.60 kcal Total: -75.70 -1.97 -77.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619568624.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.964 kcal (2) G-P(sol) polarization free energy of solvation -75.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds