Wall clock time and date at job start Tue Mar 31 2020 12:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 S 1.81400 * 109.47327 * 2 1 4 4 O 1.42108 * 110.54018 * 68.37150 * 3 2 1 5 5 O 1.42101 * 110.54411 * 291.62924 * 3 2 1 6 6 N 1.65593 * 104.45512 * 179.97438 * 3 2 1 7 7 C 1.46929 * 120.63003 * 89.99923 * 6 3 2 8 8 C 1.53193 * 108.77265 * 233.63457 * 7 6 3 9 9 C 1.53039 * 109.31456 * 305.36279 * 8 7 6 10 10 N 1.46902 * 109.46219 * 181.38943 * 9 8 7 11 11 C 1.46901 * 111.00023 * 154.99709 * 10 9 8 12 12 C 1.53000 * 109.46818 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.47398 * 305.00447 * 12 11 10 14 14 C 1.53002 * 109.47233 * 65.00620 * 12 11 10 15 15 C 1.52997 * 109.47060 * 185.00277 * 12 11 10 16 16 C 1.50698 * 109.47721 * 175.00208 * 15 12 11 17 17 H 1.08008 * 119.99163 * 0.02562 * 16 15 12 18 18 C 1.37869 * 120.00614 * 180.02562 * 16 15 12 19 19 N 1.31515 * 119.99741 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00175 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47121 * 60.00002 * 20 18 16 22 22 H 1.48503 * 109.47160 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47085 * 299.99898 * 20 18 16 24 24 C 1.53036 * 109.53528 * 61.36826 * 9 8 7 25 25 C 1.46924 * 120.63394 * 270.02604 * 6 3 2 26 26 H 1.09001 * 109.47670 * 299.99784 * 1 2 3 27 27 H 1.09002 * 109.47464 * 60.00343 * 1 2 3 28 28 H 1.09007 * 109.47124 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47670 * 240.00216 * 2 1 3 30 30 H 1.09002 * 109.47464 * 119.99657 * 2 1 3 31 31 H 1.09000 * 109.58812 * 113.84947 * 7 6 3 32 32 H 1.08996 * 109.70414 * 353.48706 * 7 6 3 33 33 H 1.09002 * 109.49329 * 185.41394 * 8 7 6 34 34 H 1.09003 * 109.50238 * 65.31971 * 8 7 6 35 35 H 1.09001 * 109.46040 * 301.36157 * 9 8 7 36 36 H 1.00901 * 110.99576 * 31.04501 * 10 9 8 37 37 H 1.09002 * 109.46747 * 60.00311 * 11 10 9 38 38 H 1.08991 * 109.47315 * 300.00378 * 11 10 9 39 39 H 1.08996 * 109.47407 * 180.02562 * 14 12 11 40 40 H 1.09000 * 109.46986 * 299.99797 * 14 12 11 41 41 H 1.09002 * 109.47075 * 59.99068 * 14 12 11 42 42 H 1.09000 * 109.47325 * 295.00173 * 15 12 11 43 43 H 1.09008 * 109.47017 * 55.00082 * 15 12 11 44 44 H 0.97006 * 119.99397 * 180.02562 * 19 18 16 45 45 H 1.08999 * 109.49891 * 58.58882 * 24 9 8 46 46 H 1.09002 * 109.49290 * 178.68592 * 24 9 8 47 47 H 1.09003 * 109.58979 * 246.15524 * 25 6 3 48 48 H 1.09005 * 109.58639 * 6.43326 * 25 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 8 1.8384 2.3438 1.2370 5 8 1.8385 2.3439 -1.2369 6 7 3.7842 1.5654 0.0007 7 6 4.5305 1.4997 -1.2632 8 6 5.4157 0.2495 -1.2487 9 6 6.2978 0.2684 0.0017 10 7 7.1718 -0.9123 0.0020 11 6 8.3873 -0.6674 0.7898 12 6 9.2700 -1.9169 0.7672 13 1 8.6938 -2.7752 1.1126 14 6 9.7576 -2.1711 -0.6606 15 6 10.4742 -1.7073 1.6875 16 6 11.2777 -2.9800 1.7613 17 1 10.9613 -3.8512 1.2067 18 6 12.4166 -3.0324 2.5365 19 7 12.8021 -1.9714 3.2112 20 14 13.4122 -4.6104 2.6285 21 1 13.8860 -4.9766 1.2696 22 1 14.5810 -4.4069 3.5216 23 1 12.5612 -5.7018 3.1668 24 6 5.4146 0.2494 1.2514 25 6 4.5294 1.4995 1.2652 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.1541 2.3878 -1.3660 32 1 3.8333 1.4440 -2.0992 33 1 6.0457 0.2395 -2.1382 34 1 4.7874 -0.6411 -1.2373 35 1 6.9079 1.1717 0.0022 36 1 7.4016 -1.1923 -0.9397 37 1 8.1127 -0.4356 1.8189 38 1 8.9346 0.1724 0.3618 39 1 10.3861 -3.0615 -0.6769 40 1 8.8997 -2.3204 -1.3163 41 1 10.3338 -1.3127 -1.0061 42 1 11.0985 -0.9060 1.2922 43 1 10.1266 -1.4387 2.6851 44 1 13.6036 -2.0082 3.7564 45 1 4.7863 -0.6412 1.2393 46 1 6.0439 0.2393 2.1414 47 1 5.1529 2.3876 1.3687 48 1 3.8297 1.4452 2.0993 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619568625.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:02 Heat of formation + Delta-G solvation = -93.854064 kcal Electronic energy + Delta-G solvation = -25386.773394 eV Core-core repulsion = 21795.801896 eV Total energy + Delta-G solvation = -3590.971497 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.15630 -37.48334 -36.60890 -36.25026 -34.14324 -33.56043 -32.22687 -31.39605 -30.00379 -26.86273 -25.66114 -24.56339 -23.65579 -23.48824 -21.98260 -20.46251 -19.23289 -18.86936 -18.10798 -16.75678 -16.61483 -16.40072 -15.67340 -15.19838 -14.90081 -14.68934 -14.54527 -14.44405 -14.13063 -13.80897 -13.66477 -13.30362 -12.95299 -12.88247 -12.74928 -12.53043 -12.39384 -12.19536 -12.11427 -12.00482 -11.97338 -11.59741 -11.46944 -11.42334 -10.98679 -10.91041 -10.83862 -10.77251 -10.55269 -10.34820 -10.19926 -9.74012 -9.36426 -9.14806 -8.98031 -8.34241 -8.20311 -5.98997 -4.00311 -0.10543 2.26691 3.33067 3.37713 3.39916 3.48794 3.75658 4.10089 4.20980 4.33582 4.34049 4.47151 4.59602 4.73718 4.87158 4.93269 5.10379 5.11018 5.16012 5.26937 5.36364 5.36798 5.41386 5.45439 5.51001 5.53748 5.69775 5.74004 5.80970 5.89720 6.00146 6.01549 6.16201 6.24739 6.29902 6.44043 6.53425 6.92069 7.08050 7.14658 7.34126 7.61276 7.67871 7.83933 8.01013 8.44704 9.05817 9.63135 11.12458 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.030810 B = 0.002210 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.572784 B =12664.213633 C =12723.149248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.633 4.633 3 S 2.608 3.392 4 O -0.954 6.954 5 O -0.957 6.957 6 N -0.998 5.998 7 C 0.124 3.876 8 C -0.138 4.138 9 C 0.088 3.912 10 N -0.688 5.688 11 C 0.065 3.935 12 C -0.084 4.084 13 H 0.064 0.936 14 C -0.134 4.134 15 C 0.028 3.972 16 C -0.514 4.514 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.890 3.110 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.124 4.124 25 C 0.120 3.880 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.045 0.955 36 H 0.339 0.661 37 H 0.067 0.933 38 H 0.023 0.977 39 H 0.062 0.938 40 H 0.031 0.969 41 H 0.040 0.960 42 H 0.014 0.986 43 H 0.015 0.985 44 H 0.260 0.740 45 H 0.072 0.928 46 H 0.079 0.921 47 H 0.074 0.926 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.959 6.202 -8.932 25.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.762 4.762 3 S 2.701 3.299 4 O -0.945 6.945 5 O -0.947 6.947 6 N -0.836 5.836 7 C -0.002 4.002 8 C -0.177 4.177 9 C -0.023 4.023 10 N -0.320 5.320 11 C -0.064 4.064 12 C -0.103 4.103 13 H 0.083 0.917 14 C -0.191 4.191 15 C -0.009 4.009 16 C -0.552 4.552 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.718 3.282 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.164 4.164 25 C -0.005 4.005 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.150 0.850 30 H 0.151 0.849 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.158 0.842 37 H 0.085 0.915 38 H 0.042 0.958 39 H 0.081 0.919 40 H 0.050 0.950 41 H 0.059 0.941 42 H 0.032 0.968 43 H 0.033 0.967 44 H 0.070 0.930 45 H 0.091 0.909 46 H 0.097 0.903 47 H 0.092 0.908 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -23.620 6.777 -8.295 25.935 hybrid contribution 1.446 -1.089 -0.436 1.862 sum -22.174 5.688 -8.730 24.500 Atomic orbital electron populations 1.21506 0.90627 1.05112 1.03338 1.30571 1.07042 1.26745 1.11845 1.05171 0.72958 0.77543 0.74237 1.93598 1.83185 1.72522 1.45169 1.93588 1.83249 1.72574 1.45279 1.57731 1.24016 1.89501 1.12341 1.21412 0.95659 0.98601 0.84498 1.22149 0.98913 0.98460 0.98219 1.21415 0.93691 0.92757 0.94395 1.60608 1.18438 1.34132 1.18789 1.22180 0.88768 0.97966 0.97457 1.21218 0.97006 0.95662 0.96399 0.91708 1.21737 0.99176 1.01955 0.96224 1.19102 0.91092 0.97000 0.93727 1.21191 1.08620 0.97841 1.27558 0.92660 1.25020 0.97655 0.96173 0.95706 1.69956 1.24716 1.28651 1.30321 0.86688 0.79636 0.83939 0.77895 1.20325 1.21376 1.20277 1.21951 0.98186 0.97375 0.98843 1.21525 0.95765 0.99129 0.84125 0.90995 0.91054 0.89964 0.85039 0.84884 0.90762 0.89075 0.90687 0.90684 0.93753 0.84187 0.91489 0.95841 0.91900 0.95018 0.94055 0.96809 0.96702 0.93029 0.90937 0.90260 0.90797 0.89015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.92 37.15 0.37 -0.45 16 2 C -0.63 -3.70 6.90 37.15 0.26 -3.45 16 3 S 2.61 23.26 5.41 -107.50 -0.58 22.67 16 4 O -0.95 -11.39 16.72 -57.54 -0.96 -12.36 16 5 O -0.96 -11.07 16.73 -57.54 -0.96 -12.03 16 6 N -1.00 -8.44 3.22 -113.52 -0.37 -8.80 16 7 C 0.12 0.96 6.31 -3.71 -0.02 0.94 16 8 C -0.14 -1.11 5.36 -26.61 -0.14 -1.25 16 9 C 0.09 0.92 2.46 -67.67 -0.17 0.75 16 10 N -0.69 -8.94 6.31 -106.68 -0.67 -9.61 16 11 C 0.06 1.05 4.94 -3.82 -0.02 1.03 16 12 C -0.08 -1.65 2.55 -90.62 -0.23 -1.88 16 13 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 14 C -0.13 -2.39 8.77 37.16 0.33 -2.06 16 15 C 0.03 0.71 4.45 -27.89 -0.12 0.59 16 16 C -0.51 -14.18 8.41 -34.44 -0.29 -14.47 16 17 H 0.06 1.48 7.06 -52.48 -0.37 1.11 16 18 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 20 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 24 C -0.12 -1.21 5.59 -26.61 -0.15 -1.36 16 25 C 0.12 1.05 6.32 -3.71 -0.02 1.02 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.13 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.13 0.65 8.14 -51.92 -0.42 0.22 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.62 7.11 -51.93 -0.37 0.25 16 33 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.04 0.50 7.80 -51.93 -0.40 0.09 16 36 H 0.34 4.16 6.58 -39.29 -0.26 3.91 16 37 H 0.07 1.12 7.41 -51.93 -0.38 0.74 16 38 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 39 H 0.06 1.23 6.95 -51.93 -0.36 0.87 16 40 H 0.03 0.46 6.68 -51.93 -0.35 0.12 16 41 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.01 0.39 8.14 -51.92 -0.42 -0.03 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.08 0.85 7.42 -51.93 -0.39 0.47 16 47 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.09 0.74 7.09 -51.93 -0.37 0.37 16 LS Contribution 384.36 15.07 5.79 5.79 Total: -1.00 -33.62 384.36 -11.07 -44.69 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -8.72 Total: -1.70 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -0.31 Total: -19.11 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: -0.30 Total: -44.43 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -1.92 Total: -24.39 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 23.26 SS G_CDS: -0.58 Total: 22.67 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.62 -11.07 -44.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619568625.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.167 kcal (2) G-P(sol) polarization free energy of solvation -33.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds