Wall clock time and date at job start Tue Mar 31 2020 12:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 S 1.81400 * 109.47327 * 2 1 4 4 O 1.42108 * 110.54018 * 68.37150 * 3 2 1 5 5 O 1.42101 * 110.54411 * 291.62924 * 3 2 1 6 6 N 1.65593 * 104.45512 * 179.97438 * 3 2 1 7 7 C 1.46929 * 120.63003 * 89.99923 * 6 3 2 8 8 C 1.53193 * 108.77265 * 233.63457 * 7 6 3 9 9 C 1.53039 * 109.31456 * 305.36279 * 8 7 6 10 10 N 1.46902 * 109.46219 * 181.38943 * 9 8 7 11 11 C 1.46901 * 111.00023 * 154.99709 * 10 9 8 12 12 C 1.53000 * 109.46818 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.47398 * 305.00447 * 12 11 10 14 14 C 1.53002 * 109.47233 * 65.00620 * 12 11 10 15 15 C 1.52997 * 109.47060 * 185.00277 * 12 11 10 16 16 C 1.50698 * 109.47721 * 175.00208 * 15 12 11 17 17 H 1.08008 * 119.99163 * 0.02562 * 16 15 12 18 18 C 1.37869 * 120.00614 * 180.02562 * 16 15 12 19 19 N 1.31515 * 119.99741 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00175 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47121 * 60.00002 * 20 18 16 22 22 H 1.48503 * 109.47160 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47085 * 299.99898 * 20 18 16 24 24 C 1.53036 * 109.53528 * 61.36826 * 9 8 7 25 25 C 1.46924 * 120.63394 * 270.02604 * 6 3 2 26 26 H 1.09001 * 109.47670 * 299.99784 * 1 2 3 27 27 H 1.09002 * 109.47464 * 60.00343 * 1 2 3 28 28 H 1.09007 * 109.47124 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47670 * 240.00216 * 2 1 3 30 30 H 1.09002 * 109.47464 * 119.99657 * 2 1 3 31 31 H 1.09000 * 109.58812 * 113.84947 * 7 6 3 32 32 H 1.08996 * 109.70414 * 353.48706 * 7 6 3 33 33 H 1.09002 * 109.49329 * 185.41394 * 8 7 6 34 34 H 1.09003 * 109.50238 * 65.31971 * 8 7 6 35 35 H 1.09001 * 109.46040 * 301.36157 * 9 8 7 36 36 H 1.00901 * 110.99576 * 31.04501 * 10 9 8 37 37 H 1.09002 * 109.46747 * 60.00311 * 11 10 9 38 38 H 1.08991 * 109.47315 * 300.00378 * 11 10 9 39 39 H 1.08996 * 109.47407 * 180.02562 * 14 12 11 40 40 H 1.09000 * 109.46986 * 299.99797 * 14 12 11 41 41 H 1.09002 * 109.47075 * 59.99068 * 14 12 11 42 42 H 1.09000 * 109.47325 * 295.00173 * 15 12 11 43 43 H 1.09008 * 109.47017 * 55.00082 * 15 12 11 44 44 H 0.97006 * 119.99397 * 180.02562 * 19 18 16 45 45 H 1.08999 * 109.49891 * 58.58882 * 24 9 8 46 46 H 1.09002 * 109.49290 * 178.68592 * 24 9 8 47 47 H 1.09003 * 109.58979 * 246.15524 * 25 6 3 48 48 H 1.09005 * 109.58639 * 6.43326 * 25 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 8 1.8384 2.3438 1.2370 5 8 1.8385 2.3439 -1.2369 6 7 3.7842 1.5654 0.0007 7 6 4.5305 1.4997 -1.2632 8 6 5.4157 0.2495 -1.2487 9 6 6.2978 0.2684 0.0017 10 7 7.1718 -0.9123 0.0020 11 6 8.3873 -0.6674 0.7898 12 6 9.2700 -1.9169 0.7672 13 1 8.6938 -2.7752 1.1126 14 6 9.7576 -2.1711 -0.6606 15 6 10.4742 -1.7073 1.6875 16 6 11.2777 -2.9800 1.7613 17 1 10.9613 -3.8512 1.2067 18 6 12.4166 -3.0324 2.5365 19 7 12.8021 -1.9714 3.2112 20 14 13.4122 -4.6104 2.6285 21 1 13.8860 -4.9766 1.2696 22 1 14.5810 -4.4069 3.5216 23 1 12.5612 -5.7018 3.1668 24 6 5.4146 0.2494 1.2514 25 6 4.5294 1.4995 1.2652 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.1541 2.3878 -1.3660 32 1 3.8333 1.4440 -2.0992 33 1 6.0457 0.2395 -2.1382 34 1 4.7874 -0.6411 -1.2373 35 1 6.9079 1.1717 0.0022 36 1 7.4016 -1.1923 -0.9397 37 1 8.1127 -0.4356 1.8189 38 1 8.9346 0.1724 0.3618 39 1 10.3861 -3.0615 -0.6769 40 1 8.8997 -2.3204 -1.3163 41 1 10.3338 -1.3127 -1.0061 42 1 11.0985 -0.9060 1.2922 43 1 10.1266 -1.4387 2.6851 44 1 13.6036 -2.0082 3.7564 45 1 4.7863 -0.6412 1.2393 46 1 6.0439 0.2393 2.1414 47 1 5.1529 2.3876 1.3687 48 1 3.8297 1.4452 2.0993 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619568625.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:01 Heat of formation + Delta-G solvation = -117.714843 kcal Electronic energy + Delta-G solvation = -25387.808075 eV Core-core repulsion = 21795.801896 eV Total energy + Delta-G solvation = -3592.006178 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.97204 -38.26982 -37.91655 -37.05306 -35.56306 -34.06022 -33.98346 -32.08343 -31.14457 -28.71331 -26.99513 -25.22419 -24.75325 -24.35844 -23.30853 -21.26232 -20.58731 -19.78092 -18.82321 -18.49614 -17.41955 -17.29079 -16.77117 -16.59088 -15.90775 -15.76319 -15.39477 -15.31255 -15.15314 -14.86770 -14.39055 -14.31181 -14.11390 -14.08183 -13.56555 -13.44971 -13.40681 -13.28151 -13.22231 -13.21106 -12.86365 -12.74920 -12.63415 -12.43673 -12.40414 -12.23265 -12.13875 -11.90714 -11.65859 -11.48953 -11.46609 -11.37298 -11.02776 -10.84378 -10.51821 -9.99043 -9.29338 -8.16322 -6.25388 -0.76209 1.40941 1.43460 1.51102 1.60703 2.42852 2.85398 3.10999 3.17143 3.20552 3.57776 3.77422 3.83632 3.90982 4.13978 4.20542 4.27481 4.33020 4.38004 4.38849 4.44608 4.49873 4.59486 4.69860 4.76654 4.79622 4.82182 4.84571 4.88415 4.92915 5.01580 5.08804 5.09808 5.22791 5.26873 5.29825 5.40482 5.42735 5.51677 5.57821 5.61766 5.83244 5.91511 6.16723 6.33432 6.60408 6.90945 7.42919 8.95474 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.030810 B = 0.002210 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.572784 B =12664.213633 C =12723.149248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.611 4.611 3 S 2.608 3.392 4 O -0.992 6.992 5 O -0.988 6.988 6 N -0.999 5.999 7 C 0.121 3.879 8 C -0.130 4.130 9 C 0.084 3.916 10 N -0.683 5.683 11 C 0.079 3.921 12 C -0.075 4.075 13 H 0.057 0.943 14 C -0.126 4.126 15 C 0.032 3.968 16 C -0.528 4.528 17 H 0.061 0.939 18 C -0.003 4.003 19 N -0.936 5.936 20 Si 0.960 3.040 21 H -0.267 1.267 22 H -0.286 1.286 23 H -0.268 1.268 24 C -0.120 4.120 25 C 0.123 3.877 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.101 0.899 29 H 0.154 0.846 30 H 0.149 0.851 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.036 0.964 36 H 0.346 0.654 37 H 0.055 0.945 38 H 0.019 0.981 39 H 0.043 0.957 40 H 0.070 0.930 41 H 0.038 0.962 42 H -0.013 1.013 43 H -0.015 1.015 44 H 0.261 0.739 45 H 0.080 0.920 46 H 0.064 0.936 47 H 0.070 0.930 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.202 4.384 -10.461 26.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.744 4.744 3 S 2.706 3.294 4 O -0.983 6.983 5 O -0.979 6.979 6 N -0.837 5.837 7 C -0.004 4.004 8 C -0.169 4.169 9 C -0.026 4.026 10 N -0.316 5.316 11 C -0.050 4.050 12 C -0.094 4.094 13 H 0.076 0.924 14 C -0.184 4.184 15 C -0.005 4.005 16 C -0.566 4.566 17 H 0.080 0.920 18 C -0.201 4.201 19 N -0.577 5.577 20 Si 0.785 3.215 21 H -0.192 1.192 22 H -0.212 1.212 23 H -0.193 1.193 24 C -0.160 4.160 25 C -0.003 4.003 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.119 0.881 29 H 0.172 0.828 30 H 0.167 0.833 31 H 0.091 0.909 32 H 0.122 0.878 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.054 0.946 36 H 0.166 0.834 37 H 0.074 0.926 38 H 0.037 0.963 39 H 0.062 0.938 40 H 0.088 0.912 41 H 0.057 0.943 42 H 0.006 0.994 43 H 0.004 0.996 44 H 0.070 0.930 45 H 0.099 0.901 46 H 0.082 0.918 47 H 0.088 0.912 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -24.867 4.994 -9.844 27.207 hybrid contribution 1.778 -0.520 0.047 1.853 sum -23.089 4.474 -9.797 25.477 Atomic orbital electron populations 1.21687 0.90274 1.06385 1.03591 1.30381 1.07261 1.22947 1.13815 1.04972 0.72786 0.78827 0.72800 1.93546 1.83699 1.74645 1.46401 1.93542 1.83652 1.74532 1.46143 1.57614 1.23853 1.89800 1.12401 1.21512 0.95879 0.98505 0.84536 1.22098 0.98678 0.98989 0.97121 1.21517 0.93604 0.91258 0.96185 1.60530 1.16764 1.35418 1.18867 1.21839 0.89595 0.95919 0.97657 1.21006 0.95154 0.96935 0.96258 0.92447 1.21647 1.00314 1.00878 0.95514 1.19008 0.92806 0.95335 0.93385 1.21620 1.08965 0.98767 1.27267 0.92048 1.25956 0.99043 0.99690 0.95374 1.70100 1.25350 1.30980 1.31262 0.85573 0.77943 0.79666 0.78307 1.19175 1.21178 1.19258 1.21907 0.98052 0.98164 0.97891 1.21469 0.95737 0.98485 0.84623 0.91089 0.90781 0.88073 0.82798 0.83282 0.90948 0.87771 0.89438 0.89503 0.94634 0.83366 0.92598 0.96269 0.93804 0.91165 0.94284 0.99419 0.99632 0.92996 0.90143 0.91781 0.91204 0.88458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.92 71.98 0.71 -0.67 16 2 C -0.61 -5.36 6.90 71.98 0.50 -4.87 16 3 S 2.61 43.55 5.41 -56.49 -0.31 43.24 16 4 O -0.99 -23.51 16.72 -127.65 -2.13 -25.65 16 5 O -0.99 -22.07 16.73 -127.65 -2.14 -24.21 16 6 N -1.00 -15.49 3.22 -513.06 -1.65 -17.14 16 7 C 0.12 1.64 6.31 86.36 0.55 2.18 16 8 C -0.13 -1.72 5.36 30.67 0.16 -1.55 16 9 C 0.08 1.63 2.46 44.94 0.11 1.74 16 10 N -0.68 -16.48 6.31 -491.44 -3.10 -19.58 16 11 C 0.08 2.55 4.94 86.30 0.43 2.97 16 12 C -0.07 -2.92 2.55 -10.79 -0.03 -2.94 16 13 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 14 C -0.13 -4.34 8.77 71.98 0.63 -3.71 16 15 C 0.03 1.67 4.45 29.85 0.13 1.80 16 16 C -0.53 -29.52 8.41 25.60 0.22 -29.30 16 17 H 0.06 3.28 7.06 -2.91 -0.02 3.26 16 18 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 19 N -0.94 -57.12 13.29 21.44 0.28 -56.83 16 20 Si 0.96 44.13 29.54 68.60 2.03 46.16 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 24 C -0.12 -2.21 5.59 30.67 0.17 -2.04 16 25 C 0.12 2.04 6.32 86.36 0.55 2.59 16 26 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.15 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.15 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.10 1.17 7.11 -2.39 -0.02 1.16 16 33 H 0.09 0.98 8.10 -2.39 -0.02 0.96 16 34 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.04 0.77 7.80 -2.39 -0.02 0.75 16 36 H 0.35 7.47 6.58 -89.69 -0.59 6.88 16 37 H 0.06 1.92 7.41 -2.39 -0.02 1.90 16 38 H 0.02 0.63 8.05 -2.39 -0.02 0.61 16 39 H 0.04 1.66 6.95 -2.39 -0.02 1.65 16 40 H 0.07 1.87 6.68 -2.39 -0.02 1.85 16 41 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 42 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 43 H -0.01 -0.84 8.14 -2.38 -0.02 -0.86 16 44 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 45 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.06 1.38 7.42 -2.39 -0.02 1.36 16 47 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.10 1.51 7.09 -2.38 -0.02 1.50 16 Total: -1.00 -73.81 384.36 -2.10 -75.91 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.33 Total: 11.65 kcal Atomic # 6 Polarization: -38.14 SS G_CDS: 4.59 Total: -33.55 kcal Atomic # 7 Polarization: -89.09 SS G_CDS: -4.47 Total: -93.56 kcal Atomic # 8 Polarization: -45.58 SS G_CDS: -4.27 Total: -49.85 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: 43.55 SS G_CDS: -0.31 Total: 43.24 kcal Total: -73.81 -2.10 -75.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619568625.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.802 kcal (2) G-P(sol) polarization free energy of solvation -73.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds