Wall clock time and date at job start Tue Mar 31 2020 11:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47275 * 2 1 4 4 C 1.46493 * 120.00444 * 275.27738 * 3 2 1 5 5 C 1.52997 * 109.47398 * 274.72686 * 4 3 2 6 6 C 1.53005 * 117.49989 * 243.61967 * 5 4 3 7 7 C 1.52997 * 60.00061 * 252.50806 * 6 5 4 8 8 S 1.65608 * 119.99583 * 95.00419 * 3 2 1 9 9 O 1.42100 * 106.40059 * 203.54152 * 8 3 2 10 10 O 1.42096 * 106.40050 * 336.46185 * 8 3 2 11 11 N 1.65599 * 107.21718 * 90.00246 * 8 3 2 12 12 C 1.46502 * 119.99727 * 269.99659 * 11 8 3 13 13 C 1.50696 * 109.47005 * 95.00367 * 12 11 8 14 14 H 1.07999 * 120.00504 * 359.97438 * 13 12 11 15 15 C 1.37885 * 120.00164 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99538 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00254 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47001 * 89.99778 * 17 15 13 19 19 H 1.48497 * 109.46774 * 209.99690 * 17 15 13 20 20 H 1.48505 * 109.46797 * 329.99493 * 17 15 13 21 21 C 1.46499 * 120.00337 * 89.99671 * 11 8 3 22 22 C 1.52999 * 109.46773 * 94.99767 * 21 11 8 23 23 C 1.53008 * 109.46951 * 175.00318 * 22 21 11 24 24 C 1.53000 * 109.47479 * 294.99997 * 22 21 11 25 25 H 1.09005 * 109.47015 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46714 * 299.99336 * 1 2 3 27 27 H 1.08990 * 109.47196 * 59.99425 * 1 2 3 28 28 H 1.09005 * 109.47025 * 239.99991 * 2 1 3 29 29 H 1.09001 * 109.47382 * 120.01018 * 2 1 3 30 30 H 1.09004 * 109.46868 * 34.72321 * 4 3 2 31 31 H 1.09004 * 109.47439 * 154.72444 * 4 3 2 32 32 H 1.08997 * 115.54840 * 29.32534 * 5 4 3 33 33 H 1.09002 * 117.49693 * 0.02562 * 6 5 4 34 34 H 1.09000 * 117.49634 * 145.01940 * 6 5 4 35 35 H 1.09001 * 117.50089 * 252.51283 * 7 6 5 36 36 H 1.09003 * 117.50184 * 107.48619 * 7 6 5 37 37 H 1.09001 * 109.47107 * 215.00120 * 12 11 8 38 38 H 1.08998 * 109.47122 * 335.00235 * 12 11 8 39 39 H 0.97010 * 119.99744 * 180.02562 * 16 15 13 40 40 H 1.08997 * 109.47561 * 214.99701 * 21 11 8 41 41 H 1.09003 * 109.47156 * 335.00543 * 21 11 8 42 42 H 1.09003 * 109.47054 * 55.00542 * 22 21 11 43 43 H 1.08991 * 109.47118 * 59.99742 * 23 22 21 44 44 H 1.09002 * 109.46759 * 180.02562 * 23 22 21 45 45 H 1.08997 * 109.46775 * 299.99850 * 23 22 21 46 46 H 1.08998 * 109.46849 * 60.00407 * 24 22 21 47 47 H 1.09002 * 109.47424 * 179.97438 * 24 22 21 48 48 H 1.08999 * 109.46956 * 300.00149 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1526 2.1107 -1.2632 5 6 3.5094 1.7923 -1.8945 6 6 4.5018 2.9457 -2.0554 7 6 3.7951 2.3677 -3.2831 8 16 2.4123 2.1200 1.4288 9 8 2.3058 3.5184 1.2000 10 8 1.6870 1.4412 2.4448 11 7 4.0146 1.8135 1.7137 12 6 4.4091 0.6235 2.4716 13 6 4.7354 -0.4953 1.5162 14 1 4.6564 -0.3360 0.4509 15 6 5.1339 -1.7226 2.0020 16 7 5.2297 -1.9167 3.2992 17 14 5.5377 -3.1097 0.8177 18 1 6.9801 -3.0578 0.4680 19 1 5.2304 -4.4133 1.4590 20 1 4.7237 -2.9604 -0.4154 21 6 5.0374 2.7322 1.2078 22 6 5.4102 3.7333 2.3031 23 6 6.5649 4.6127 1.8187 24 6 4.1998 4.6123 2.6242 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 0.5139 -0.8898 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5140 0.8899 30 1 1.3558 1.8093 -1.9433 31 1 2.0825 3.1818 -1.0735 32 1 3.9152 0.8071 -1.6647 33 1 4.1882 3.9312 -1.7111 34 1 5.5608 2.7193 -1.9313 35 1 4.3891 1.7611 -3.9667 36 1 3.0162 2.9730 -3.7470 37 1 5.2866 0.8523 3.0764 38 1 3.5892 0.3185 3.1219 39 1 5.5104 -2.7801 3.6410 40 1 5.9222 2.1662 0.9165 41 1 4.6480 3.2687 0.3425 42 1 5.7157 3.1939 3.1997 43 1 6.2595 5.1520 0.9221 44 1 6.8308 5.3256 2.5992 45 1 7.4272 3.9865 1.5900 46 1 3.3772 3.9859 2.9693 47 1 4.4653 5.3253 3.4048 48 1 3.8944 5.1517 1.7276 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766048360.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:27 Heat of formation + Delta-G solvation = -65.293740 kcal Electronic energy + Delta-G solvation = -28092.590078 eV Core-core repulsion = 24502.857050 eV Total energy + Delta-G solvation = -3589.733029 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -37.93848 -37.11843 -36.49518 -35.38387 -35.10357 -33.69962 -32.07852 -30.25768 -27.40873 -26.75768 -26.13627 -24.92439 -22.55840 -22.36817 -22.21773 -20.38084 -19.63159 -18.22582 -17.30363 -16.84637 -16.38836 -15.94883 -15.31322 -14.81914 -14.51384 -14.26064 -14.16667 -14.01858 -13.52908 -13.33432 -12.82516 -12.55507 -12.45458 -12.30016 -12.14084 -11.99689 -11.88731 -11.55156 -11.54056 -11.41263 -11.38634 -11.24924 -11.12749 -11.05375 -10.79114 -10.73268 -10.56476 -10.44280 -10.34055 -10.26684 -10.21810 -9.86460 -9.76559 -9.67448 -8.68669 -8.48210 -7.93903 -6.10154 -4.16207 1.34803 3.23288 3.31036 3.31795 3.49492 3.90889 4.19235 4.36001 4.81704 4.97339 5.02091 5.13643 5.23674 5.27296 5.34319 5.36322 5.44460 5.49795 5.62035 5.64271 5.70515 5.78606 5.80250 5.85556 5.99101 6.00570 6.05760 6.11000 6.17754 6.22414 6.23438 6.27879 6.30782 6.44174 6.45879 6.56068 6.62170 6.68296 6.76621 6.90055 7.04029 7.39846 7.50321 7.71976 7.88292 8.18179 8.89273 9.49353 10.97701 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.009709 B = 0.007233 C = 0.006183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.264933 B = 3870.387362 C = 4527.176307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.123 3.877 3 N -1.000 6.000 4 C 0.150 3.850 5 C -0.172 4.172 6 C -0.180 4.180 7 C -0.179 4.179 8 S 2.781 3.219 9 O -0.994 6.994 10 O -0.980 6.980 11 N -0.987 5.987 12 C 0.246 3.754 13 C -0.534 4.534 14 H 0.063 0.937 15 C 0.064 3.936 16 N -0.889 5.889 17 Si 0.890 3.110 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.140 3.860 22 C -0.120 4.120 23 C -0.140 4.140 24 C -0.136 4.136 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.036 0.964 38 H 0.048 0.952 39 H 0.264 0.736 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.052 0.948 44 H 0.051 0.949 45 H 0.054 0.946 46 H 0.043 0.957 47 H 0.042 0.958 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.714 8.857 -9.635 13.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.003 4.003 3 N -0.836 5.836 4 C 0.024 3.976 5 C -0.192 4.192 6 C -0.217 4.217 7 C -0.216 4.216 8 S 2.791 3.209 9 O -0.978 6.978 10 O -0.964 6.964 11 N -0.827 5.827 12 C 0.124 3.876 13 C -0.574 4.574 14 H 0.081 0.919 15 C -0.139 4.139 16 N -0.528 5.528 17 Si 0.718 3.282 18 H -0.208 1.208 19 H -0.212 1.212 20 H -0.198 1.198 21 C 0.013 3.987 22 C -0.140 4.140 23 C -0.198 4.198 24 C -0.193 4.193 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.133 0.867 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.287 9.185 -8.926 13.223 hybrid contribution 0.698 -1.294 -0.866 1.706 sum -2.589 7.891 -9.792 12.840 Atomic orbital electron populations 1.22220 0.96924 1.01962 1.01829 1.21198 0.93225 0.81565 1.04294 1.57968 1.80028 1.23569 1.22052 1.20819 0.94924 0.96480 0.85407 1.22972 0.97690 0.99538 0.99006 1.23092 0.98511 0.98043 1.02090 1.22893 1.03578 1.04206 0.90959 1.01926 0.73484 0.72695 0.72806 1.93551 1.87071 1.30950 1.86248 1.93568 1.71221 1.75837 1.55810 1.57657 1.22576 1.34773 1.67709 1.19158 0.97462 0.79830 0.91179 1.21550 1.46293 0.95983 0.93555 0.91913 1.24949 0.95444 0.98498 0.94994 1.69937 1.46906 1.24212 1.11700 0.86629 0.78673 0.81752 0.81118 1.20764 1.21186 1.19800 1.21181 0.92850 0.89877 0.94812 1.21601 0.95636 0.96604 1.00185 1.21738 0.97926 0.99336 1.00818 1.21884 0.96942 0.99112 1.01391 0.91785 0.92224 0.93048 0.91035 0.88549 0.90465 0.89467 0.86651 0.88579 0.88642 0.89063 0.89048 0.94567 0.93418 0.92665 0.90568 0.91304 0.90750 0.92898 0.93013 0.92709 0.93772 0.93905 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 10.23 37.16 0.38 -2.06 16 2 C 0.12 2.04 6.06 -4.04 -0.02 2.01 16 3 N -1.00 -16.82 2.84 -114.39 -0.32 -17.14 16 4 C 0.15 2.07 5.96 -4.05 -0.02 2.04 16 5 C -0.17 -2.29 6.01 -90.62 -0.54 -2.84 16 6 C -0.18 -2.17 8.27 -26.73 -0.22 -2.39 16 7 C -0.18 -1.93 10.25 -26.73 -0.27 -2.20 16 8 S 2.78 55.44 5.24 -107.50 -0.56 54.88 16 9 O -0.99 -19.40 12.09 -57.17 -0.69 -20.09 16 10 O -0.98 -22.97 15.66 -57.17 -0.90 -23.87 16 11 N -0.99 -20.00 2.55 -115.67 -0.29 -20.30 16 12 C 0.25 5.99 5.43 -5.19 -0.03 5.96 16 13 C -0.53 -13.50 9.38 -34.44 -0.32 -13.82 16 14 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -25.06 13.29 55.43 0.74 -24.32 16 17 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 C 0.14 2.41 4.97 -4.04 -0.02 2.39 16 22 C -0.12 -1.93 3.12 -90.62 -0.28 -2.21 16 23 C -0.14 -1.80 9.19 37.16 0.34 -1.46 16 24 C -0.14 -2.25 7.62 37.16 0.28 -1.96 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.05 0.63 8.13 -51.93 -0.42 0.21 16 28 H 0.07 1.07 8.11 -51.93 -0.42 0.65 16 29 H 0.10 1.90 7.61 -51.93 -0.40 1.50 16 30 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 31 H 0.09 1.20 6.65 -51.93 -0.35 0.86 16 32 H 0.12 1.77 8.14 -51.93 -0.42 1.35 16 33 H 0.10 1.13 7.82 -51.93 -0.41 0.72 16 34 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.04 0.93 8.05 -51.93 -0.42 0.51 16 38 H 0.05 1.30 6.91 -51.93 -0.36 0.94 16 39 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.08 1.34 8.11 -51.93 -0.42 0.92 16 41 H 0.07 1.08 5.31 -51.93 -0.28 0.80 16 42 H 0.07 1.29 8.08 -51.93 -0.42 0.87 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.04 0.82 5.77 -51.93 -0.30 0.52 16 47 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.07 1.08 7.45 -51.93 -0.39 0.69 16 LS Contribution 388.15 15.07 5.85 5.85 Total: -1.00 -29.37 388.15 -10.80 -40.17 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -8.76 Total: 4.46 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -0.84 Total: -14.94 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: 0.12 Total: -61.76 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -1.59 Total: -43.96 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 55.44 SS G_CDS: -0.56 Total: 54.88 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.37 -10.80 -40.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766048360.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.125 kcal (2) G-P(sol) polarization free energy of solvation -29.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds