Wall clock time and date at job start Tue Mar 31 2020 11:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47275 * 2 1 4 4 C 1.46493 * 120.00444 * 275.27738 * 3 2 1 5 5 C 1.52997 * 109.47398 * 274.72686 * 4 3 2 6 6 C 1.53005 * 117.49989 * 243.61967 * 5 4 3 7 7 C 1.52997 * 60.00061 * 252.50806 * 6 5 4 8 8 S 1.65608 * 119.99583 * 95.00419 * 3 2 1 9 9 O 1.42100 * 106.40059 * 203.54152 * 8 3 2 10 10 O 1.42096 * 106.40050 * 336.46185 * 8 3 2 11 11 N 1.65599 * 107.21718 * 90.00246 * 8 3 2 12 12 C 1.46502 * 119.99727 * 269.99659 * 11 8 3 13 13 C 1.50696 * 109.47005 * 95.00367 * 12 11 8 14 14 H 1.07999 * 120.00504 * 359.97438 * 13 12 11 15 15 C 1.37885 * 120.00164 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99538 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00254 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47001 * 89.99778 * 17 15 13 19 19 H 1.48497 * 109.46774 * 209.99690 * 17 15 13 20 20 H 1.48505 * 109.46797 * 329.99493 * 17 15 13 21 21 C 1.46499 * 120.00337 * 89.99671 * 11 8 3 22 22 C 1.52999 * 109.46773 * 94.99767 * 21 11 8 23 23 C 1.53008 * 109.46951 * 175.00318 * 22 21 11 24 24 C 1.53000 * 109.47479 * 294.99997 * 22 21 11 25 25 H 1.09005 * 109.47015 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46714 * 299.99336 * 1 2 3 27 27 H 1.08990 * 109.47196 * 59.99425 * 1 2 3 28 28 H 1.09005 * 109.47025 * 239.99991 * 2 1 3 29 29 H 1.09001 * 109.47382 * 120.01018 * 2 1 3 30 30 H 1.09004 * 109.46868 * 34.72321 * 4 3 2 31 31 H 1.09004 * 109.47439 * 154.72444 * 4 3 2 32 32 H 1.08997 * 115.54840 * 29.32534 * 5 4 3 33 33 H 1.09002 * 117.49693 * 0.02562 * 6 5 4 34 34 H 1.09000 * 117.49634 * 145.01940 * 6 5 4 35 35 H 1.09001 * 117.50089 * 252.51283 * 7 6 5 36 36 H 1.09003 * 117.50184 * 107.48619 * 7 6 5 37 37 H 1.09001 * 109.47107 * 215.00120 * 12 11 8 38 38 H 1.08998 * 109.47122 * 335.00235 * 12 11 8 39 39 H 0.97010 * 119.99744 * 180.02562 * 16 15 13 40 40 H 1.08997 * 109.47561 * 214.99701 * 21 11 8 41 41 H 1.09003 * 109.47156 * 335.00543 * 21 11 8 42 42 H 1.09003 * 109.47054 * 55.00542 * 22 21 11 43 43 H 1.08991 * 109.47118 * 59.99742 * 23 22 21 44 44 H 1.09002 * 109.46759 * 180.02562 * 23 22 21 45 45 H 1.08997 * 109.46775 * 299.99850 * 23 22 21 46 46 H 1.08998 * 109.46849 * 60.00407 * 24 22 21 47 47 H 1.09002 * 109.47424 * 179.97438 * 24 22 21 48 48 H 1.08999 * 109.46956 * 300.00149 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1526 2.1107 -1.2632 5 6 3.5094 1.7923 -1.8945 6 6 4.5018 2.9457 -2.0554 7 6 3.7951 2.3677 -3.2831 8 16 2.4123 2.1200 1.4288 9 8 2.3058 3.5184 1.2000 10 8 1.6870 1.4412 2.4448 11 7 4.0146 1.8135 1.7137 12 6 4.4091 0.6235 2.4716 13 6 4.7354 -0.4953 1.5162 14 1 4.6564 -0.3360 0.4509 15 6 5.1339 -1.7226 2.0020 16 7 5.2297 -1.9167 3.2992 17 14 5.5377 -3.1097 0.8177 18 1 6.9801 -3.0578 0.4680 19 1 5.2304 -4.4133 1.4590 20 1 4.7237 -2.9604 -0.4154 21 6 5.0374 2.7322 1.2078 22 6 5.4102 3.7333 2.3031 23 6 6.5649 4.6127 1.8187 24 6 4.1998 4.6123 2.6242 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 0.5139 -0.8898 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5140 0.8899 30 1 1.3558 1.8093 -1.9433 31 1 2.0825 3.1818 -1.0735 32 1 3.9152 0.8071 -1.6647 33 1 4.1882 3.9312 -1.7111 34 1 5.5608 2.7193 -1.9313 35 1 4.3891 1.7611 -3.9667 36 1 3.0162 2.9730 -3.7470 37 1 5.2866 0.8523 3.0764 38 1 3.5892 0.3185 3.1219 39 1 5.5104 -2.7801 3.6410 40 1 5.9222 2.1662 0.9165 41 1 4.6480 3.2687 0.3425 42 1 5.7157 3.1939 3.1997 43 1 6.2595 5.1520 0.9221 44 1 6.8308 5.3256 2.5992 45 1 7.4272 3.9865 1.5900 46 1 3.3772 3.9859 2.9693 47 1 4.4653 5.3253 3.4048 48 1 3.8944 5.1517 1.7276 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766048360.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:26 Heat of formation + Delta-G solvation = -81.800525 kcal Electronic energy + Delta-G solvation = -28093.305866 eV Core-core repulsion = 24502.857050 eV Total energy + Delta-G solvation = -3590.448817 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.05811 -38.58294 -38.14614 -36.84926 -36.50992 -35.41320 -33.88782 -31.46371 -29.25343 -27.99878 -27.29944 -26.50777 -24.26417 -23.76288 -23.14468 -21.49430 -20.96536 -19.71475 -18.81364 -18.55370 -18.23717 -17.44793 -16.79372 -16.24731 -15.85971 -15.61576 -15.49977 -15.31294 -15.01003 -14.63471 -14.39926 -14.02895 -13.82117 -13.70897 -13.61595 -13.35977 -13.27257 -13.04319 -13.02683 -12.94059 -12.77142 -12.55205 -12.52063 -12.38984 -12.26406 -12.22783 -12.17429 -11.95145 -11.73358 -11.72087 -11.51858 -11.45261 -11.14205 -10.73753 -10.56609 -9.97929 -9.62802 -8.14017 -6.27099 -0.23156 1.42437 1.43371 1.53220 2.01257 2.43032 2.59080 2.99832 3.17474 3.43943 3.85324 3.90794 3.93185 4.08000 4.10529 4.16314 4.24954 4.35910 4.39922 4.46258 4.50053 4.64755 4.75101 4.80415 4.84580 4.88247 4.89068 4.93202 4.98201 5.01609 5.06431 5.12435 5.17911 5.26321 5.28483 5.33659 5.35455 5.36646 5.43265 5.47387 5.49469 5.61293 5.77188 5.80406 6.07646 6.14734 6.85491 7.42524 8.94118 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.009709 B = 0.007233 C = 0.006183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.264933 B = 3870.387362 C = 4527.176307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.120 3.880 3 N -0.995 5.995 4 C 0.146 3.854 5 C -0.191 4.191 6 C -0.187 4.187 7 C -0.152 4.152 8 S 2.788 3.212 9 O -0.991 6.991 10 O -1.022 7.022 11 N -0.990 5.990 12 C 0.265 3.735 13 C -0.529 4.529 14 H 0.073 0.927 15 C 0.010 3.990 16 N -0.931 5.931 17 Si 0.955 3.045 18 H -0.276 1.276 19 H -0.289 1.289 20 H -0.257 1.257 21 C 0.136 3.864 22 C -0.122 4.122 23 C -0.133 4.133 24 C -0.134 4.134 25 H 0.080 0.920 26 H 0.037 0.963 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.056 0.944 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.015 0.985 38 H 0.010 0.990 39 H 0.263 0.737 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.052 0.948 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.058 0.942 46 H 0.014 0.986 47 H 0.062 0.938 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.557 9.752 -12.970 16.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.006 4.006 3 N -0.834 5.834 4 C 0.021 3.979 5 C -0.211 4.211 6 C -0.224 4.224 7 C -0.190 4.190 8 S 2.798 3.202 9 O -0.975 6.975 10 O -1.007 7.007 11 N -0.830 5.830 12 C 0.141 3.859 13 C -0.568 4.568 14 H 0.091 0.909 15 C -0.189 4.189 16 N -0.571 5.571 17 Si 0.780 3.220 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.181 1.181 21 C 0.010 3.990 22 C -0.142 4.142 23 C -0.191 4.191 24 C -0.192 4.192 25 H 0.099 0.901 26 H 0.056 0.944 27 H 0.097 0.903 28 H 0.110 0.890 29 H 0.075 0.925 30 H 0.123 0.877 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.129 0.871 37 H 0.033 0.967 38 H 0.028 0.972 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.071 0.929 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.033 0.967 47 H 0.081 0.919 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.124 10.117 -12.282 16.216 hybrid contribution 0.621 -1.503 0.155 1.633 sum -2.503 8.614 -12.127 15.084 Atomic orbital electron populations 1.22189 0.94954 1.03227 1.02079 1.21237 0.94883 0.81169 1.03270 1.57748 1.79674 1.23771 1.22252 1.21092 0.96384 0.96199 0.84194 1.22819 0.97664 0.98956 1.01682 1.23165 0.98302 0.97689 1.03275 1.22978 1.03189 1.02993 0.89798 1.01539 0.73036 0.72613 0.73023 1.93541 1.86927 1.30651 1.86353 1.93510 1.72232 1.76701 1.58228 1.57555 1.23526 1.34055 1.67820 1.18637 0.94996 0.81371 0.90907 1.21778 1.45045 0.96072 0.93950 0.90930 1.25798 0.95481 1.01154 0.96444 1.70082 1.48397 1.24828 1.13759 0.85594 0.78698 0.78257 0.79401 1.20207 1.21510 1.18079 1.21395 0.92045 0.89648 0.95869 1.21613 0.96876 0.96707 0.99023 1.21690 0.96452 0.99081 1.01889 1.21874 0.96063 0.99038 1.02202 0.90105 0.94357 0.90301 0.89008 0.92522 0.87668 0.89310 0.88880 0.88145 0.88777 0.88195 0.87090 0.96727 0.97196 0.92757 0.90994 0.89292 0.92937 0.91235 0.91612 0.92242 0.96719 0.91941 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.53 10.23 71.98 0.74 -3.79 16 2 C 0.12 3.93 6.06 86.38 0.52 4.45 16 3 N -1.00 -32.86 2.84 -515.81 -1.47 -34.33 16 4 C 0.15 3.68 5.96 86.38 0.52 4.19 16 5 C -0.19 -4.63 6.01 -10.79 -0.06 -4.69 16 6 C -0.19 -4.01 8.27 30.59 0.25 -3.75 16 7 C -0.15 -2.72 10.25 30.59 0.31 -2.40 16 8 S 2.79 113.61 5.24 -56.49 -0.30 113.32 16 9 O -0.99 -38.45 12.09 -128.00 -1.55 -40.00 16 10 O -1.02 -50.51 15.66 -128.00 -2.00 -52.52 16 11 N -0.99 -41.43 2.55 -519.85 -1.32 -42.75 16 12 C 0.26 13.60 5.43 85.63 0.47 14.06 16 13 C -0.53 -27.38 9.38 25.60 0.24 -27.14 16 14 H 0.07 3.54 7.81 -2.91 -0.02 3.52 16 15 C 0.01 0.55 5.46 84.66 0.46 1.01 16 16 N -0.93 -54.30 13.29 21.45 0.28 -54.02 16 17 Si 0.96 41.80 29.54 68.60 2.03 43.82 16 18 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 19 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 20 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 21 C 0.14 4.70 4.97 86.38 0.43 5.12 16 22 C -0.12 -3.89 3.12 -10.79 -0.03 -3.93 16 23 C -0.13 -3.16 9.19 71.98 0.66 -2.50 16 24 C -0.13 -4.38 7.62 71.98 0.55 -3.83 16 25 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 26 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.08 1.71 8.13 -2.39 -0.02 1.69 16 28 H 0.09 2.60 8.11 -2.38 -0.02 2.58 16 29 H 0.06 2.31 7.61 -2.39 -0.02 2.29 16 30 H 0.11 2.07 8.09 -2.39 -0.02 2.05 16 31 H 0.09 2.22 6.65 -2.39 -0.02 2.20 16 32 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.10 2.06 7.82 -2.39 -0.02 2.04 16 34 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.01 0.80 8.05 -2.39 -0.02 0.78 16 38 H 0.01 0.59 6.91 -2.39 -0.02 0.57 16 39 H 0.26 14.60 8.31 -92.70 -0.77 13.82 16 40 H 0.07 2.53 8.11 -2.39 -0.02 2.51 16 41 H 0.09 2.69 5.31 -2.39 -0.01 2.68 16 42 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 43 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.01 0.54 5.77 -2.39 -0.01 0.52 16 47 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 48 H 0.07 2.23 7.45 -2.39 -0.02 2.21 16 Total: -1.00 -66.02 388.15 1.63 -64.40 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: 0.90 Total: 25.27 kcal Atomic # 6 Polarization: -28.25 SS G_CDS: 5.05 Total: -23.20 kcal Atomic # 7 Polarization: -128.59 SS G_CDS: -2.51 Total: -131.10 kcal Atomic # 8 Polarization: -88.96 SS G_CDS: -3.55 Total: -92.52 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Atomic # 16 Polarization: 113.61 SS G_CDS: -0.30 Total: 113.32 kcal Total: -66.02 1.63 -64.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766048360.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.403 kcal (2) G-P(sol) polarization free energy of solvation -66.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds