Wall clock time and date at job start Tue Mar 31 2020 12:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 S 1.81400 * 109.47068 * 2 1 4 4 O 1.42094 * 110.54519 * 76.75051 * 3 2 1 5 5 O 1.42105 * 110.54195 * 299.99867 * 3 2 1 6 6 N 1.65603 * 104.45019 * 188.37721 * 3 2 1 7 7 C 1.46497 * 119.99633 * 275.61765 * 6 3 2 8 8 H 1.08996 * 109.47434 * 4.73560 * 7 6 3 9 9 C 1.53004 * 109.46999 * 244.73016 * 7 6 3 10 10 C 1.52999 * 109.46924 * 124.73389 * 7 6 3 11 11 C 1.52996 * 109.47144 * 295.64262 * 10 7 6 12 12 C 1.50703 * 109.47542 * 180.02562 * 11 10 7 13 13 H 1.08007 * 119.99478 * 359.97438 * 12 11 10 14 14 C 1.37868 * 120.00353 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99997 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00175 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47034 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46896 * 120.00285 * 16 14 12 19 19 H 1.48497 * 109.47460 * 240.00291 * 16 14 12 20 20 C 1.46498 * 119.99947 * 95.61779 * 6 3 2 21 21 H 1.09005 * 109.53188 * 186.83397 * 20 6 3 22 22 C 1.53120 * 109.50489 * 66.74325 * 20 6 3 23 23 C 1.53118 * 109.16037 * 182.40266 * 22 20 6 24 24 C 1.53043 * 109.27792 * 57.65041 * 23 22 20 25 25 N 1.46840 * 109.52288 * 300.81852 * 24 23 22 26 26 C 1.46846 * 111.19732 * 61.74716 * 25 24 23 27 27 H 1.09006 * 109.47251 * 60.00163 * 1 2 3 28 28 H 1.08998 * 109.47248 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47293 * 300.00071 * 1 2 3 30 30 H 1.08997 * 109.47176 * 240.00274 * 2 1 3 31 31 H 1.08997 * 109.47227 * 120.00061 * 2 1 3 32 32 H 1.08996 * 109.47327 * 294.95381 * 9 7 6 33 33 H 1.08998 * 109.47122 * 54.95712 * 9 7 6 34 34 H 1.09005 * 109.47085 * 174.95754 * 9 7 6 35 35 H 1.08999 * 109.47454 * 55.64595 * 10 7 6 36 36 H 1.09000 * 109.47293 * 175.64061 * 10 7 6 37 37 H 1.09002 * 109.47282 * 299.99710 * 11 10 7 38 38 H 1.08998 * 109.47465 * 60.00193 * 11 10 7 39 39 H 0.96999 * 119.99758 * 179.97438 * 15 14 12 40 40 H 1.09003 * 109.52000 * 302.30345 * 22 20 6 41 41 H 1.08995 * 109.52667 * 62.49102 * 22 20 6 42 42 H 1.08997 * 109.50319 * 297.71249 * 23 22 20 43 43 H 1.09005 * 109.50176 * 177.58971 * 23 22 20 44 44 H 1.08997 * 109.46066 * 180.79862 * 24 23 22 45 45 H 1.08996 * 109.46068 * 60.83967 * 24 23 22 46 46 H 1.00894 * 111.00159 * 297.64301 * 25 24 23 47 47 H 1.08998 * 109.46574 * 58.27077 * 26 25 24 48 48 H 1.08999 * 109.46397 * 178.24977 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 2.0133 2.2821 1.2951 5 8 1.6735 2.4022 -1.1524 6 7 3.7681 1.5710 -0.2336 7 6 4.6529 1.3245 0.9077 8 1 4.0542 1.1797 1.8069 9 6 5.5820 2.5247 1.1013 10 6 5.4883 0.0702 0.6438 11 6 4.5664 -1.1478 0.5581 12 6 5.3893 -2.3834 0.2987 13 1 6.4625 -2.3074 0.2041 14 6 4.7722 -3.6108 0.1823 15 7 3.4652 -3.7032 0.2971 16 14 5.7921 -5.1423 -0.1399 17 1 7.2274 -4.7717 -0.2275 18 1 5.5978 -6.1090 0.9706 19 1 5.3619 -5.7637 -1.4181 20 6 4.3284 1.6944 -1.5816 21 1 5.3918 1.4560 -1.5575 22 6 4.1373 3.1276 -2.0855 23 6 4.6712 3.2325 -3.5168 24 6 3.9419 2.2205 -4.4035 25 7 4.1562 0.8654 -3.8802 26 6 3.6091 0.7271 -2.5245 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 6.2429 2.6153 0.2393 33 1 4.9870 3.4326 1.2000 34 1 6.1780 2.3811 2.0026 35 1 6.0280 0.1843 -0.2963 36 1 6.2006 -0.0697 1.4569 37 1 4.0267 -1.2619 1.4982 38 1 3.8542 -1.0080 -0.2551 39 1 3.0311 -4.5667 0.2148 40 1 3.0769 3.3797 -2.0729 41 1 4.6840 3.8162 -1.4414 42 1 5.7398 3.0182 -3.5232 43 1 4.4990 4.2397 -3.8965 44 1 4.3296 2.2828 -5.4203 45 1 2.8750 2.4438 -4.4077 46 1 5.1345 0.6198 -3.9022 47 1 2.5438 0.9573 -2.5374 48 1 3.7555 -0.2954 -2.1763 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172508976.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:21 Heat of formation + Delta-G solvation = -107.724113 kcal Electronic energy + Delta-G solvation = -28077.001957 eV Core-core repulsion = 24485.429009 eV Total energy + Delta-G solvation = -3591.572948 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.47277 -38.52666 -37.62682 -37.06770 -35.25573 -34.07966 -33.29726 -32.32746 -31.19942 -29.44894 -26.94763 -25.25341 -24.49309 -23.84067 -23.22533 -21.68022 -21.50240 -19.73911 -18.55135 -18.26890 -17.48210 -17.34599 -16.80480 -16.49019 -16.32352 -15.57372 -15.35886 -15.24489 -15.09671 -14.81840 -14.37779 -14.26779 -14.12017 -13.96042 -13.62443 -13.40986 -13.37030 -13.22235 -13.13905 -13.05817 -12.96897 -12.86806 -12.67672 -12.45101 -12.36617 -12.29337 -12.06799 -11.84023 -11.73004 -11.55253 -11.52353 -11.27096 -11.08080 -10.93873 -10.45174 -10.09371 -9.13790 -8.12840 -6.19436 -0.73708 1.39757 1.43203 1.52543 1.58007 2.44426 2.74120 3.10545 3.21909 3.35466 3.52169 3.77780 3.84751 3.92648 4.02300 4.09133 4.18684 4.31976 4.34179 4.36405 4.36935 4.51123 4.62978 4.66930 4.72288 4.81410 4.87551 4.94393 5.00213 5.02597 5.03266 5.05146 5.10225 5.12676 5.25132 5.27032 5.38242 5.42949 5.52906 5.63150 5.70821 5.91383 5.96190 6.11440 6.35418 6.53305 6.96081 7.48121 8.97357 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.011976 B = 0.005757 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.451430 B = 4862.564535 C = 5409.820710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.624 4.624 3 S 2.613 3.387 4 O -0.990 6.990 5 O -0.966 6.966 6 N -0.977 5.977 7 C 0.144 3.856 8 H 0.079 0.921 9 C -0.148 4.148 10 C -0.111 4.111 11 C 0.018 3.982 12 C -0.532 4.532 13 H 0.054 0.946 14 C 0.009 3.991 15 N -0.922 5.922 16 Si 0.946 3.054 17 H -0.266 1.266 18 H -0.285 1.285 19 H -0.283 1.283 20 C 0.134 3.866 21 H 0.100 0.900 22 C -0.156 4.156 23 C -0.143 4.143 24 C 0.052 3.948 25 N -0.680 5.680 26 C 0.025 3.975 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.132 0.868 31 H 0.124 0.876 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.063 0.937 37 H -0.014 1.014 38 H 0.024 0.976 39 H 0.259 0.741 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.094 0.906 45 H 0.064 0.936 46 H 0.349 0.651 47 H 0.074 0.926 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.750 12.921 -5.377 14.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.754 4.754 3 S 2.709 3.291 4 O -0.981 6.981 5 O -0.956 6.956 6 N -0.814 5.814 7 C 0.039 3.961 8 H 0.097 0.903 9 C -0.207 4.207 10 C -0.150 4.150 11 C -0.019 4.019 12 C -0.570 4.570 13 H 0.072 0.928 14 C -0.189 4.189 15 N -0.562 5.562 16 Si 0.773 3.227 17 H -0.190 1.190 18 H -0.212 1.212 19 H -0.209 1.209 20 C 0.026 3.974 21 H 0.118 0.882 22 C -0.195 4.195 23 C -0.182 4.182 24 C -0.077 4.077 25 N -0.309 5.309 26 C -0.107 4.107 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.150 0.850 31 H 0.142 0.858 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.004 0.996 38 H 0.042 0.958 39 H 0.068 0.932 40 H 0.103 0.897 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.113 0.887 45 H 0.082 0.918 46 H 0.167 0.833 47 H 0.092 0.908 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.414 13.338 -5.582 14.465 hybrid contribution 1.017 -1.589 0.697 2.011 sum 0.603 11.749 -4.885 12.738 Atomic orbital electron populations 1.21598 0.89577 1.05804 1.03719 1.30602 1.07994 1.24501 1.12341 1.04865 0.73422 0.77588 0.73215 1.93512 1.85857 1.76271 1.42425 1.93474 1.80906 1.71060 1.50192 1.57392 1.23287 1.87323 1.13380 1.21051 0.92340 0.95940 0.86785 0.90327 1.22067 0.99123 0.96523 1.02995 1.21900 0.98167 0.93399 1.01518 1.19207 0.95173 0.92012 0.95529 1.21655 0.93939 0.93434 1.47952 0.92767 1.25704 0.95836 1.01810 0.95543 1.70044 1.09495 1.25175 1.51512 0.85678 0.79501 0.80064 0.77442 1.18999 1.21158 1.20937 1.21592 1.00111 0.96075 0.79634 0.88203 1.22453 1.03983 0.95591 0.97502 1.22181 1.00498 1.01357 0.94200 1.22148 1.00805 0.86121 0.98621 1.60597 1.23275 1.26578 1.20422 1.22723 0.99990 0.99247 0.88708 0.89895 0.89341 0.90667 0.85012 0.85755 0.91281 0.92626 0.90424 0.91759 0.91818 0.99562 0.95790 0.93188 0.89746 0.91193 0.90889 0.89904 0.88732 0.91755 0.83266 0.90782 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.12 9.92 71.98 0.71 -3.41 16 2 C -0.62 -20.83 5.57 71.98 0.40 -20.43 16 3 S 2.61 86.45 4.60 -56.49 -0.26 86.19 16 4 O -0.99 -37.44 16.84 -127.65 -2.15 -39.59 16 5 O -0.97 -32.62 12.87 -127.65 -1.64 -34.26 16 6 N -0.98 -30.12 1.91 -470.95 -0.90 -31.02 16 7 C 0.14 4.51 2.47 44.99 0.11 4.62 16 8 H 0.08 2.63 7.15 -2.39 -0.02 2.62 16 9 C -0.15 -3.68 9.19 71.98 0.66 -3.02 16 10 C -0.11 -3.94 4.50 30.59 0.14 -3.80 16 11 C 0.02 0.81 4.29 29.85 0.13 0.94 16 12 C -0.53 -27.69 9.11 25.60 0.23 -27.46 16 13 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 14 C 0.01 0.51 5.46 84.65 0.46 0.97 16 15 N -0.92 -51.96 13.29 21.44 0.28 -51.67 16 16 Si 0.95 42.60 29.54 68.60 2.03 44.63 16 17 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 18 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 C 0.13 3.69 1.84 45.04 0.08 3.77 16 21 H 0.10 2.61 6.11 -2.38 -0.01 2.59 16 22 C -0.16 -3.88 5.32 30.67 0.16 -3.72 16 23 C -0.14 -2.77 6.08 30.65 0.19 -2.58 16 24 C 0.05 1.11 6.55 86.33 0.57 1.68 16 25 N -0.68 -17.52 6.87 -514.02 -3.53 -21.04 16 26 C 0.02 0.74 4.82 86.33 0.42 1.16 16 27 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 28 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.13 4.60 6.17 -2.39 -0.01 4.59 16 31 H 0.12 4.62 7.47 -2.39 -0.02 4.60 16 32 H 0.07 1.52 7.68 -2.39 -0.02 1.51 16 33 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.06 2.17 6.52 -2.39 -0.02 2.15 16 36 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 37 H -0.01 -0.71 7.97 -2.39 -0.02 -0.73 16 38 H 0.02 1.10 4.49 -2.39 -0.01 1.09 16 39 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 40 H 0.08 2.46 5.30 -2.39 -0.01 2.45 16 41 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 44 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.35 8.06 8.86 -89.70 -0.79 7.26 16 47 H 0.07 2.35 5.76 -2.39 -0.01 2.34 16 48 H 0.07 2.54 6.54 -2.39 -0.02 2.52 16 Total: -1.00 -63.39 367.98 -1.76 -65.15 By element: Atomic # 1 Polarization: 32.74 SS G_CDS: 0.15 Total: 32.89 kcal Atomic # 6 Polarization: -55.54 SS G_CDS: 4.26 Total: -51.28 kcal Atomic # 7 Polarization: -99.59 SS G_CDS: -4.14 Total: -103.74 kcal Atomic # 8 Polarization: -70.05 SS G_CDS: -3.79 Total: -73.84 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: 86.45 SS G_CDS: -0.26 Total: 86.19 kcal Total: -63.39 -1.76 -65.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172508976.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.578 kcal (2) G-P(sol) polarization free energy of solvation -63.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds