Wall clock time and date at job start Tue Mar 31 2020 12:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81400 * 109.46932 * 2 1 4 4 O 1.42103 * 110.54197 * 76.75403 * 3 2 1 5 5 O 1.42097 * 110.54593 * 300.00064 * 3 2 1 6 6 N 1.65601 * 104.44897 * 188.37273 * 3 2 1 7 7 C 1.46493 * 120.00444 * 276.35790 * 6 3 2 8 8 H 1.08997 * 109.47145 * 4.21642 * 7 6 3 9 9 C 1.52998 * 109.47584 * 124.22203 * 7 6 3 10 10 C 1.53003 * 109.47095 * 244.21915 * 7 6 3 11 11 C 1.53010 * 109.46632 * 63.53807 * 10 7 6 12 12 C 1.50700 * 109.46588 * 179.97438 * 11 10 7 13 13 H 1.08001 * 120.00337 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99575 * 179.97438 * 12 11 10 15 15 N 1.31506 * 120.00323 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99928 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47087 * 359.97438 * 16 14 12 18 18 H 1.48491 * 109.47471 * 120.00231 * 16 14 12 19 19 H 1.48506 * 109.47295 * 240.00506 * 16 14 12 20 20 C 1.46500 * 119.99642 * 96.35170 * 6 3 2 21 21 H 1.09001 * 109.53657 * 187.21019 * 20 6 3 22 22 C 1.53116 * 109.50338 * 67.10890 * 20 6 3 23 23 C 1.53125 * 109.16282 * 182.40610 * 22 20 6 24 24 C 1.53031 * 109.27958 * 57.65192 * 23 22 20 25 25 N 1.46854 * 109.52219 * 300.82301 * 24 23 22 26 26 C 1.46842 * 111.19875 * 61.74563 * 25 24 23 27 27 H 1.08999 * 109.46992 * 299.99742 * 1 2 3 28 28 H 1.09008 * 109.47019 * 59.99790 * 1 2 3 29 29 H 1.08998 * 109.47533 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46992 * 240.00258 * 2 1 3 31 31 H 1.08991 * 109.46828 * 120.00190 * 2 1 3 32 32 H 1.09002 * 109.47238 * 55.20783 * 9 7 6 33 33 H 1.08995 * 109.47550 * 175.20957 * 9 7 6 34 34 H 1.09001 * 109.46958 * 295.20906 * 9 7 6 35 35 H 1.09000 * 109.47299 * 183.53684 * 10 7 6 36 36 H 1.08994 * 109.47292 * 303.53762 * 10 7 6 37 37 H 1.09000 * 109.47179 * 299.99951 * 11 10 7 38 38 H 1.09002 * 109.47251 * 60.00591 * 11 10 7 39 39 H 0.97003 * 120.00446 * 179.97438 * 15 14 12 40 40 H 1.08993 * 109.52369 * 62.50014 * 22 20 6 41 41 H 1.08996 * 109.52394 * 302.30495 * 22 20 6 42 42 H 1.09011 * 109.50033 * 297.71185 * 23 22 20 43 43 H 1.08996 * 109.50228 * 177.59699 * 23 22 20 44 44 H 1.09005 * 109.46257 * 180.80913 * 24 23 22 45 45 H 1.08995 * 109.45803 * 60.83203 * 24 23 22 46 46 H 1.00905 * 110.99822 * 185.83896 * 25 24 23 47 47 H 1.09000 * 109.46541 * 58.26779 * 26 25 24 48 48 H 1.08996 * 109.46402 * 178.24186 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 2.0134 2.2820 1.2953 5 8 1.6736 2.4022 -1.1523 6 7 3.7682 1.5711 -0.2335 7 6 4.6512 1.3085 0.9055 8 1 4.0517 1.1624 1.8039 9 6 5.4756 0.0489 0.6320 10 6 5.5909 2.4990 1.1074 11 6 4.7715 3.7399 1.4678 12 6 5.6971 4.9123 1.6673 13 1 6.7630 4.7852 1.5484 14 6 5.1830 6.1475 2.0005 15 7 3.8851 6.3024 2.1447 16 14 6.3301 7.6010 2.2471 17 1 7.7333 7.1667 2.0290 18 1 5.9869 8.6726 1.2781 19 1 6.1824 8.1191 3.6310 20 6 4.3302 1.7104 -1.5792 21 1 5.3916 1.4633 -1.5583 22 6 4.1503 3.1524 -2.0616 23 6 4.6857 3.2748 -3.4909 24 6 3.9492 2.2821 -4.3931 25 7 4.1527 0.9175 -3.8901 26 6 3.6039 0.7630 -2.5369 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 6.0098 0.1619 -0.3114 33 1 6.1922 -0.0989 1.4399 34 1 4.8120 -0.8138 0.5726 35 1 6.2894 2.2778 1.9144 36 1 6.1454 2.6843 0.1875 37 1 4.0730 3.9611 0.6608 38 1 4.2171 3.5546 2.3878 39 1 3.5234 7.1713 2.3795 40 1 4.7020 3.8270 -1.4069 41 1 3.0920 3.4125 -2.0456 42 1 5.7529 3.0524 -3.5001 43 1 4.5216 4.2889 -3.8554 44 1 4.3381 2.3567 -5.4087 45 1 2.8841 2.5136 -4.3942 46 1 3.7566 0.2368 -4.5209 47 1 2.5404 1.0016 -2.5468 48 1 3.7421 -0.2658 -2.2043 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172508977.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:24 Heat of formation + Delta-G solvation = -79.453178 kcal Electronic energy + Delta-G solvation = -27908.529774 eV Core-core repulsion = 24318.182746 eV Total energy + Delta-G solvation = -3590.347028 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.13234 -37.09362 -36.24000 -35.50219 -33.25900 -33.16393 -31.93634 -31.36825 -29.42705 -28.32866 -25.06119 -24.27301 -23.48659 -22.74217 -21.51408 -20.05167 -19.89360 -18.43974 -17.19427 -16.46271 -16.32863 -15.94416 -15.69587 -15.07959 -14.38894 -14.37636 -14.07872 -13.92413 -13.79229 -13.49842 -13.31223 -13.00208 -12.85804 -12.64455 -12.56367 -12.31212 -12.18441 -11.87084 -11.69606 -11.67944 -11.58842 -11.37292 -11.19231 -10.95267 -10.85470 -10.67300 -10.52675 -10.41084 -10.36431 -10.08577 -9.82471 -9.64319 -9.26241 -8.91675 -8.56037 -8.38860 -8.17777 -5.82304 -3.85660 0.50172 2.89150 3.39110 3.46333 3.49868 4.13812 4.15581 4.31767 4.56774 4.58067 4.80669 4.85841 4.99553 5.07454 5.10109 5.32063 5.35377 5.41636 5.47338 5.51608 5.52160 5.56744 5.58656 5.63099 5.70807 5.77942 5.87606 5.96116 6.03726 6.11071 6.24042 6.29089 6.33934 6.37775 6.62055 6.74493 6.87663 6.91725 7.02866 7.16344 7.28941 7.32172 7.89670 8.06958 8.22482 8.59190 9.23579 9.77064 11.27821 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.012772 B = 0.005530 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.732124 B = 5062.200247 C = 5847.514181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.649 4.649 3 S 2.598 3.402 4 O -0.928 6.928 5 O -0.952 6.952 6 N -0.977 5.977 7 C 0.144 3.856 8 H 0.089 0.911 9 C -0.162 4.162 10 C -0.117 4.117 11 C 0.024 3.976 12 C -0.520 4.520 13 H 0.052 0.948 14 C 0.057 3.943 15 N -0.888 5.888 16 Si 0.885 3.115 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.286 1.286 20 C 0.171 3.829 21 H 0.098 0.902 22 C -0.163 4.163 23 C -0.111 4.111 24 C 0.055 3.945 25 N -0.681 5.681 26 C 0.024 3.976 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.019 0.981 38 H 0.021 0.979 39 H 0.258 0.742 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.035 0.965 46 H 0.341 0.659 47 H 0.047 0.953 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.247 -16.739 -10.153 19.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.776 4.776 3 S 2.689 3.311 4 O -0.918 6.918 5 O -0.942 6.942 6 N -0.814 5.814 7 C 0.039 3.961 8 H 0.107 0.893 9 C -0.221 4.221 10 C -0.156 4.156 11 C -0.013 4.013 12 C -0.558 4.558 13 H 0.070 0.930 14 C -0.144 4.144 15 N -0.527 5.527 16 Si 0.713 3.287 17 H -0.199 1.199 18 H -0.212 1.212 19 H -0.212 1.212 20 C 0.064 3.936 21 H 0.116 0.884 22 C -0.201 4.201 23 C -0.149 4.149 24 C -0.074 4.074 25 N -0.312 5.312 26 C -0.107 4.107 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.037 0.963 38 H 0.040 0.960 39 H 0.067 0.933 40 H 0.106 0.894 41 H 0.115 0.885 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.054 0.946 46 H 0.158 0.842 47 H 0.065 0.935 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.233 -15.708 -9.758 18.773 hybrid contribution -0.210 0.072 -0.054 0.229 sum -3.443 -15.636 -9.811 18.778 Atomic orbital electron populations 1.21464 0.90897 1.04467 1.03449 1.30827 1.07025 1.28739 1.11004 1.05659 0.73595 0.76873 0.74926 1.93694 1.84684 1.73141 1.40246 1.93506 1.80668 1.69302 1.50711 1.57501 1.23638 1.87103 1.13111 1.21111 0.92636 0.95634 0.86765 0.89267 1.22225 1.00257 0.96983 1.02584 1.21993 0.97610 0.95499 1.00534 1.19100 0.94748 0.90144 0.97307 1.21293 0.93278 0.94287 1.46959 0.92956 1.25023 0.94815 0.98750 0.95840 1.70023 1.10963 1.23451 1.48243 0.86655 0.81228 0.83149 0.77628 1.19882 1.21185 1.21182 1.20598 0.99235 0.94860 0.78895 0.88357 1.22499 1.05037 0.96420 0.96177 1.21502 1.00183 0.98217 0.95007 1.22003 0.98769 0.88486 0.98167 1.60160 1.62780 1.05464 1.02799 1.22667 0.97882 0.99626 0.90538 0.91154 0.91003 0.90468 0.85664 0.85369 0.91931 0.91558 0.93307 0.92462 0.92804 0.96261 0.96049 0.93251 0.89425 0.88514 0.91482 0.91375 0.91097 0.94635 0.84190 0.93450 0.90800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.92 37.16 0.37 -1.09 16 2 C -0.65 -7.11 6.84 37.16 0.25 -6.86 16 3 S 2.60 43.24 4.61 -107.50 -0.50 42.74 16 4 O -0.93 -19.92 16.38 -57.54 -0.94 -20.86 16 5 O -0.95 -17.53 12.83 -57.54 -0.74 -18.27 16 6 N -0.98 -15.44 1.87 -100.21 -0.19 -15.63 16 7 C 0.14 2.31 2.48 -67.93 -0.17 2.14 16 8 H 0.09 1.46 7.16 -51.93 -0.37 1.09 16 9 C -0.16 -1.92 9.20 37.16 0.34 -1.58 16 10 C -0.12 -2.36 4.62 -26.72 -0.12 -2.48 16 11 C 0.02 0.64 4.36 -27.88 -0.12 0.52 16 12 C -0.52 -15.08 9.11 -34.44 -0.31 -15.40 16 13 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -28.08 13.28 55.43 0.74 -27.35 16 16 Si 0.89 22.37 29.54 -169.99 -5.02 17.35 16 17 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 C 0.17 2.52 1.74 -67.85 -0.12 2.41 16 21 H 0.10 1.42 6.07 -51.93 -0.32 1.10 16 22 C -0.16 -2.82 5.23 -26.61 -0.14 -2.96 16 23 C -0.11 -1.56 6.09 -26.65 -0.16 -1.72 16 24 C 0.05 0.65 6.55 -3.83 -0.03 0.63 16 25 N -0.68 -7.59 6.85 -113.82 -0.78 -8.37 16 26 C 0.02 0.29 4.86 -3.83 -0.02 0.27 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.12 1.10 6.93 -51.92 -0.36 0.74 16 31 H 0.13 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.06 0.73 6.52 -51.93 -0.34 0.39 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.05 1.06 7.39 -51.93 -0.38 0.67 16 37 H 0.02 0.54 6.75 -51.93 -0.35 0.19 16 38 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 40 H 0.09 1.79 7.28 -51.93 -0.38 1.42 16 41 H 0.10 1.87 5.35 -51.93 -0.28 1.60 16 42 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.34 2.96 8.90 -39.29 -0.35 2.62 16 47 H 0.05 0.61 5.79 -51.93 -0.30 0.31 16 48 H 0.07 0.73 7.85 -51.93 -0.41 0.32 16 LS Contribution 372.89 15.07 5.62 5.62 Total: -1.00 -35.60 372.89 -10.58 -46.18 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -8.45 Total: 3.11 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: -0.32 Total: -24.53 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -0.23 Total: -51.35 kcal Atomic # 8 Polarization: -37.46 SS G_CDS: -1.68 Total: -39.14 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Atomic # 16 Polarization: 43.24 SS G_CDS: -0.50 Total: 42.74 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.60 -10.58 -46.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172508977.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.274 kcal (2) G-P(sol) polarization free energy of solvation -35.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds