Wall clock time and date at job start Tue Mar 31 2020 12:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81400 * 109.46932 * 2 1 4 4 O 1.42103 * 110.54197 * 76.75403 * 3 2 1 5 5 O 1.42097 * 110.54593 * 300.00064 * 3 2 1 6 6 N 1.65601 * 104.44897 * 188.37273 * 3 2 1 7 7 C 1.46493 * 120.00444 * 276.35790 * 6 3 2 8 8 H 1.08997 * 109.47145 * 4.21642 * 7 6 3 9 9 C 1.52998 * 109.47584 * 124.22203 * 7 6 3 10 10 C 1.53003 * 109.47095 * 244.21915 * 7 6 3 11 11 C 1.53010 * 109.46632 * 63.53807 * 10 7 6 12 12 C 1.50700 * 109.46588 * 179.97438 * 11 10 7 13 13 H 1.08001 * 120.00337 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99575 * 179.97438 * 12 11 10 15 15 N 1.31506 * 120.00323 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99928 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47087 * 359.97438 * 16 14 12 18 18 H 1.48491 * 109.47471 * 120.00231 * 16 14 12 19 19 H 1.48506 * 109.47295 * 240.00506 * 16 14 12 20 20 C 1.46500 * 119.99642 * 96.35170 * 6 3 2 21 21 H 1.09001 * 109.53657 * 187.21019 * 20 6 3 22 22 C 1.53116 * 109.50338 * 67.10890 * 20 6 3 23 23 C 1.53125 * 109.16282 * 182.40610 * 22 20 6 24 24 C 1.53031 * 109.27958 * 57.65192 * 23 22 20 25 25 N 1.46854 * 109.52219 * 300.82301 * 24 23 22 26 26 C 1.46842 * 111.19875 * 61.74563 * 25 24 23 27 27 H 1.08999 * 109.46992 * 299.99742 * 1 2 3 28 28 H 1.09008 * 109.47019 * 59.99790 * 1 2 3 29 29 H 1.08998 * 109.47533 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46992 * 240.00258 * 2 1 3 31 31 H 1.08991 * 109.46828 * 120.00190 * 2 1 3 32 32 H 1.09002 * 109.47238 * 55.20783 * 9 7 6 33 33 H 1.08995 * 109.47550 * 175.20957 * 9 7 6 34 34 H 1.09001 * 109.46958 * 295.20906 * 9 7 6 35 35 H 1.09000 * 109.47299 * 183.53684 * 10 7 6 36 36 H 1.08994 * 109.47292 * 303.53762 * 10 7 6 37 37 H 1.09000 * 109.47179 * 299.99951 * 11 10 7 38 38 H 1.09002 * 109.47251 * 60.00591 * 11 10 7 39 39 H 0.97003 * 120.00446 * 179.97438 * 15 14 12 40 40 H 1.08993 * 109.52369 * 62.50014 * 22 20 6 41 41 H 1.08996 * 109.52394 * 302.30495 * 22 20 6 42 42 H 1.09011 * 109.50033 * 297.71185 * 23 22 20 43 43 H 1.08996 * 109.50228 * 177.59699 * 23 22 20 44 44 H 1.09005 * 109.46257 * 180.80913 * 24 23 22 45 45 H 1.08995 * 109.45803 * 60.83203 * 24 23 22 46 46 H 1.00905 * 110.99822 * 185.83896 * 25 24 23 47 47 H 1.09000 * 109.46541 * 58.26779 * 26 25 24 48 48 H 1.08996 * 109.46402 * 178.24186 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 2.0134 2.2820 1.2953 5 8 1.6736 2.4022 -1.1523 6 7 3.7682 1.5711 -0.2335 7 6 4.6512 1.3085 0.9055 8 1 4.0517 1.1624 1.8039 9 6 5.4756 0.0489 0.6320 10 6 5.5909 2.4990 1.1074 11 6 4.7715 3.7399 1.4678 12 6 5.6971 4.9123 1.6673 13 1 6.7630 4.7852 1.5484 14 6 5.1830 6.1475 2.0005 15 7 3.8851 6.3024 2.1447 16 14 6.3301 7.6010 2.2471 17 1 7.7333 7.1667 2.0290 18 1 5.9869 8.6726 1.2781 19 1 6.1824 8.1191 3.6310 20 6 4.3302 1.7104 -1.5792 21 1 5.3916 1.4633 -1.5583 22 6 4.1503 3.1524 -2.0616 23 6 4.6857 3.2748 -3.4909 24 6 3.9492 2.2821 -4.3931 25 7 4.1527 0.9175 -3.8901 26 6 3.6039 0.7630 -2.5369 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 6.0098 0.1619 -0.3114 33 1 6.1922 -0.0989 1.4399 34 1 4.8120 -0.8138 0.5726 35 1 6.2894 2.2778 1.9144 36 1 6.1454 2.6843 0.1875 37 1 4.0730 3.9611 0.6608 38 1 4.2171 3.5546 2.3878 39 1 3.5234 7.1713 2.3795 40 1 4.7020 3.8270 -1.4069 41 1 3.0920 3.4125 -2.0456 42 1 5.7529 3.0524 -3.5001 43 1 4.5216 4.2889 -3.8554 44 1 4.3381 2.3567 -5.4087 45 1 2.8841 2.5136 -4.3942 46 1 3.7566 0.2368 -4.5209 47 1 2.5404 1.0016 -2.5468 48 1 3.7421 -0.2658 -2.2043 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172508977.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:24 Heat of formation + Delta-G solvation = -106.933858 kcal Electronic energy + Delta-G solvation = -27909.721425 eV Core-core repulsion = 24318.182746 eV Total energy + Delta-G solvation = -3591.538680 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.28853 -38.46692 -37.49187 -36.90283 -35.25966 -34.12758 -33.35614 -32.62076 -31.09821 -29.43743 -26.98792 -25.24890 -24.61139 -23.85065 -23.24182 -21.42851 -21.21035 -19.71780 -18.51633 -18.32145 -17.56132 -17.41678 -16.80428 -16.52485 -16.18538 -15.43524 -15.23057 -15.15156 -14.87531 -14.79101 -14.51538 -14.39404 -14.20123 -14.02404 -13.76069 -13.50889 -13.43666 -13.24490 -13.10967 -13.06001 -12.91813 -12.86905 -12.57159 -12.45909 -12.34776 -12.22813 -11.88239 -11.70876 -11.65139 -11.51385 -11.40428 -11.22633 -11.03822 -10.96854 -10.52602 -9.79801 -9.36370 -8.14527 -6.27423 -0.72094 1.35184 1.36790 1.49795 1.66420 2.40450 3.00001 3.14786 3.16701 3.27134 3.63263 3.76180 3.83591 3.91816 4.00057 4.16354 4.21900 4.32787 4.38807 4.39305 4.45026 4.59042 4.59960 4.66290 4.74488 4.77322 4.85252 4.86979 4.93514 4.99711 5.03342 5.06972 5.10286 5.19955 5.31068 5.34851 5.45081 5.48783 5.54971 5.64334 5.76001 5.93481 5.99165 6.07177 6.30358 6.58349 6.94797 7.41348 8.96648 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.012772 B = 0.005530 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.732124 B = 5062.200247 C = 5847.514181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.606 4.606 3 S 2.572 3.428 4 O -0.998 6.998 5 O -0.986 6.986 6 N -0.980 5.980 7 C 0.145 3.855 8 H 0.080 0.920 9 C -0.150 4.150 10 C -0.110 4.110 11 C 0.034 3.966 12 C -0.538 4.538 13 H 0.061 0.939 14 C -0.007 4.007 15 N -0.935 5.935 16 Si 0.963 3.037 17 H -0.257 1.257 18 H -0.281 1.281 19 H -0.278 1.278 20 C 0.172 3.828 21 H 0.106 0.894 22 C -0.165 4.165 23 C -0.109 4.109 24 C 0.060 3.940 25 N -0.676 5.676 26 C 0.027 3.973 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.116 0.884 30 H 0.163 0.837 31 H 0.156 0.844 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.055 0.945 37 H -0.011 1.011 38 H -0.022 1.022 39 H 0.259 0.741 40 H 0.037 0.963 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.098 0.902 45 H 0.024 0.976 46 H 0.361 0.639 47 H 0.039 0.961 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.918 -20.391 -11.693 23.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.739 4.739 3 S 2.672 3.328 4 O -0.988 6.988 5 O -0.976 6.976 6 N -0.816 5.816 7 C 0.040 3.960 8 H 0.098 0.902 9 C -0.208 4.208 10 C -0.149 4.149 11 C -0.003 4.003 12 C -0.576 4.576 13 H 0.079 0.921 14 C -0.204 4.204 15 N -0.576 5.576 16 Si 0.788 3.212 17 H -0.181 1.181 18 H -0.207 1.207 19 H -0.204 1.204 20 C 0.066 3.934 21 H 0.124 0.876 22 C -0.204 4.204 23 C -0.148 4.148 24 C -0.069 4.069 25 N -0.309 5.309 26 C -0.104 4.104 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.135 0.865 30 H 0.181 0.819 31 H 0.174 0.826 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.008 0.992 38 H -0.003 1.003 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.116 0.884 45 H 0.042 0.958 46 H 0.181 0.819 47 H 0.057 0.943 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.865 -19.319 -11.315 22.466 hybrid contribution -0.712 1.202 0.427 1.461 sum -2.577 -18.117 -10.888 21.294 Atomic orbital electron populations 1.21693 0.89967 1.06822 1.03220 1.30441 1.07554 1.21644 1.14290 1.06014 0.73978 0.79744 0.73096 1.93614 1.85534 1.76838 1.42813 1.93460 1.81047 1.72238 1.50854 1.57328 1.23271 1.87637 1.13348 1.21056 0.92182 0.95819 0.86980 0.90218 1.22139 1.00287 0.95168 1.03254 1.21855 0.97753 0.94673 1.00621 1.18902 0.94331 0.92911 0.94147 1.21813 0.94010 0.95453 1.46333 0.92119 1.26063 0.96512 1.02396 0.95432 1.70209 1.13452 1.24331 1.49587 0.85435 0.79395 0.78709 0.77704 1.18078 1.20707 1.20415 1.20652 1.00116 0.93559 0.79064 0.87575 1.22438 1.02478 0.97900 0.97608 1.21496 1.00723 0.99116 0.93427 1.21930 0.97745 0.88482 0.98749 1.60118 1.62761 1.05238 1.02761 1.22644 0.96833 1.00544 0.90343 0.92064 0.91031 0.86520 0.81876 0.82615 0.91186 0.90610 0.89845 0.91745 0.92582 0.99221 1.00345 0.93217 0.94366 0.91371 0.90820 0.91957 0.88418 0.95806 0.81921 0.94291 0.86997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 9.92 71.98 0.71 -2.03 16 2 C -0.61 -11.21 6.84 71.98 0.49 -10.72 16 3 S 2.57 88.48 4.61 -56.49 -0.26 88.22 16 4 O -1.00 -46.53 16.38 -127.65 -2.09 -48.62 16 5 O -0.99 -38.60 12.83 -127.65 -1.64 -40.23 16 6 N -0.98 -31.14 1.87 -470.96 -0.88 -32.03 16 7 C 0.15 4.63 2.48 44.99 0.11 4.74 16 8 H 0.08 2.68 7.16 -2.39 -0.02 2.66 16 9 C -0.15 -3.03 9.20 71.98 0.66 -2.36 16 10 C -0.11 -4.59 4.62 30.60 0.14 -4.45 16 11 C 0.03 1.96 4.36 29.85 0.13 2.09 16 12 C -0.54 -32.77 9.11 25.60 0.23 -32.54 16 13 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 14 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 15 N -0.94 -62.80 13.28 21.45 0.28 -62.51 16 16 Si 0.96 47.47 29.54 68.60 2.03 49.50 16 17 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 18 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 19 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 20 C 0.17 5.02 1.74 45.04 0.08 5.10 16 21 H 0.11 2.90 6.07 -2.39 -0.01 2.89 16 22 C -0.16 -6.12 5.23 30.67 0.16 -5.96 16 23 C -0.11 -3.14 6.09 30.65 0.19 -2.96 16 24 C 0.06 1.34 6.55 86.32 0.57 1.91 16 25 N -0.68 -12.85 6.85 -514.01 -3.52 -16.37 16 26 C 0.03 0.58 4.86 86.33 0.42 1.00 16 27 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.16 1.90 6.93 -2.39 -0.02 1.89 16 31 H 0.16 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.07 1.34 6.52 -2.39 -0.02 1.32 16 33 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.06 2.27 7.39 -2.39 -0.02 2.26 16 37 H -0.01 -0.66 6.75 -2.39 -0.02 -0.68 16 38 H -0.02 -1.42 8.14 -2.39 -0.02 -1.44 16 39 H 0.26 16.33 8.31 -92.71 -0.77 15.56 16 40 H 0.04 1.73 7.28 -2.39 -0.02 1.71 16 41 H 0.07 2.91 5.35 -2.39 -0.01 2.90 16 42 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 43 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 45 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.36 4.71 8.90 -89.69 -0.80 3.92 16 47 H 0.04 0.92 5.79 -2.39 -0.01 0.91 16 48 H 0.11 1.57 7.85 -2.39 -0.02 1.55 16 Total: -1.00 -87.51 372.89 -1.59 -89.09 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.14 Total: 19.12 kcal Atomic # 6 Polarization: -50.52 SS G_CDS: 4.36 Total: -46.17 kcal Atomic # 7 Polarization: -106.79 SS G_CDS: -4.12 Total: -110.91 kcal Atomic # 8 Polarization: -85.13 SS G_CDS: -3.73 Total: -88.85 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Atomic # 16 Polarization: 88.48 SS G_CDS: -0.26 Total: 88.22 kcal Total: -87.51 -1.59 -89.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172508977.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.842 kcal (2) G-P(sol) polarization free energy of solvation -87.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds