Wall clock time and date at job start Tue Mar 31 2020 12:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 S 1.81406 * 109.47243 * 2 1 4 4 O 1.42100 * 110.54079 * 76.75462 * 3 2 1 5 5 O 1.42090 * 110.54473 * 300.00141 * 3 2 1 6 6 N 1.65606 * 104.44930 * 188.37477 * 3 2 1 7 7 C 1.46495 * 119.99881 * 263.72494 * 6 3 2 8 8 H 1.09005 * 109.46716 * 173.82629 * 7 6 3 9 9 C 1.52995 * 109.47133 * 293.82298 * 7 6 3 10 10 C 1.52995 * 109.47320 * 53.82762 * 7 6 3 11 11 C 1.53000 * 109.47419 * 66.48092 * 10 7 6 12 12 C 1.50696 * 109.47459 * 180.02562 * 11 10 7 13 13 H 1.08004 * 119.99963 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00471 * 179.97438 * 12 11 10 15 15 N 1.31507 * 120.00470 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 119.99533 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47380 * 90.00072 * 16 14 12 18 18 H 1.48506 * 109.46989 * 210.00023 * 16 14 12 19 19 H 1.48500 * 109.47186 * 330.00023 * 16 14 12 20 20 C 1.46495 * 119.99530 * 83.72531 * 6 3 2 21 21 C 1.53124 * 109.52212 * 118.94743 * 20 6 3 22 22 C 1.53170 * 109.20976 * 177.55979 * 21 20 6 23 23 N 1.46847 * 109.55689 * 300.85996 * 22 21 20 24 24 C 1.46845 * 111.19937 * 61.73972 * 23 22 21 25 25 C 1.53038 * 109.52477 * 298.26038 * 24 23 22 26 26 H 1.08997 * 109.47269 * 59.99556 * 1 2 3 27 27 H 1.08995 * 109.47588 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46934 * 299.99962 * 1 2 3 29 29 H 1.09000 * 109.47567 * 240.00433 * 2 1 3 30 30 H 1.08997 * 109.47269 * 120.00444 * 2 1 3 31 31 H 1.08995 * 109.47445 * 307.22627 * 9 7 6 32 32 H 1.09003 * 109.47335 * 67.23472 * 9 7 6 33 33 H 1.09004 * 109.46865 * 187.22851 * 9 7 6 34 34 H 1.09007 * 109.47186 * 186.48068 * 10 7 6 35 35 H 1.08994 * 109.46988 * 306.47907 * 10 7 6 36 36 H 1.09007 * 109.46923 * 300.00137 * 11 10 7 37 37 H 1.08999 * 109.47402 * 59.99513 * 11 10 7 38 38 H 0.96995 * 120.00398 * 180.02562 * 15 14 12 39 39 H 1.08997 * 109.52639 * 358.81496 * 20 6 3 40 40 H 1.09009 * 109.49752 * 297.56025 * 21 20 6 41 41 H 1.08992 * 109.50383 * 57.67789 * 21 20 6 42 42 H 1.08995 * 109.44652 * 180.83029 * 22 21 20 43 43 H 1.09005 * 109.43776 * 60.87615 * 22 21 20 44 44 H 1.00896 * 111.00099 * 185.84078 * 23 22 21 45 45 H 1.09005 * 109.46276 * 178.24410 * 24 23 22 46 46 H 1.08997 * 109.45580 * 58.27304 * 24 23 22 47 47 H 1.08998 * 109.50098 * 299.23977 * 25 24 23 48 48 H 1.08999 * 109.53542 * 179.14326 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 2.0134 2.2820 1.2953 5 8 1.6736 2.4022 -1.1523 6 7 3.7682 1.5710 -0.2336 7 6 4.6764 1.5862 0.9158 8 1 5.6915 1.3747 0.5796 9 6 4.6358 2.9640 1.5797 10 6 4.2408 0.5211 1.9241 11 6 4.4349 -0.8685 1.3141 12 6 4.0053 -1.9176 2.3070 13 1 3.6316 -1.6227 3.2764 14 6 4.0893 -3.2539 1.9779 15 7 3.7140 -4.1693 2.8442 16 14 4.7351 -3.7639 0.3009 17 1 6.2075 -3.9440 0.3712 18 1 4.0989 -5.0424 -0.1066 19 1 4.4123 -2.7108 -0.6951 20 6 4.3050 1.4326 -1.5896 21 6 5.2344 2.6106 -1.8947 22 6 5.8389 2.4274 -3.2901 23 7 6.5858 1.1641 -3.3402 24 6 5.7038 0.0157 -3.0961 25 6 5.0962 0.1260 -1.6959 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 4.8208 3.7339 0.8307 32 1 3.6553 3.1222 2.0289 33 1 5.4024 3.0175 2.3528 34 1 4.8436 0.6085 2.8282 35 1 3.1895 0.6649 2.1731 36 1 3.8322 -0.9559 0.4100 37 1 5.4863 -1.0124 1.0650 38 1 3.7734 -5.1094 2.6129 39 1 3.4843 1.4208 -2.3068 40 1 4.6663 3.5404 -1.8617 41 1 6.0333 2.6452 -1.1541 42 1 6.5128 3.2566 -3.5054 43 1 5.0401 2.4066 -4.0316 44 1 7.0722 1.0662 -4.2188 45 1 6.2797 -0.9069 -3.1705 46 1 4.9059 0.0064 -3.8386 47 1 5.8930 0.1215 -0.9521 48 1 4.4297 -0.7184 -1.5202 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172509966.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:27 Heat of formation + Delta-G solvation = -82.393783 kcal Electronic energy + Delta-G solvation = -28138.186168 eV Core-core repulsion = 24547.711626 eV Total energy + Delta-G solvation = -3590.474542 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.27718 -37.33537 -36.36597 -35.63734 -33.64343 -32.81121 -32.21739 -30.88773 -30.14049 -28.88406 -25.36808 -23.87023 -23.20671 -22.96184 -21.82142 -20.70643 -19.39858 -18.40630 -17.21826 -17.04008 -16.39660 -16.18106 -15.94105 -14.98358 -14.67400 -14.37379 -14.07516 -13.91039 -13.87857 -13.63561 -13.37572 -13.25380 -12.87545 -12.77641 -12.46184 -12.32887 -12.17364 -12.16455 -11.81230 -11.73365 -11.55739 -11.31018 -11.28206 -11.16561 -11.10126 -10.99730 -10.75848 -10.58579 -10.42717 -10.14111 -9.86597 -9.71804 -9.68537 -9.20469 -8.64854 -8.57123 -8.56626 -6.10805 -4.09261 0.55341 2.83993 3.21959 3.28651 3.31108 4.05650 4.11836 4.36579 4.41478 4.60181 4.84664 4.89556 4.96012 5.04396 5.13531 5.19415 5.23754 5.34308 5.39987 5.44025 5.49401 5.57102 5.63473 5.64409 5.77108 5.78346 5.82658 5.94688 6.05683 6.09666 6.13109 6.17840 6.27008 6.29850 6.35468 6.49874 6.57916 6.81996 6.87866 6.91707 6.94579 7.24748 7.27270 7.34452 7.72061 8.47980 8.96199 9.51407 11.02486 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.010746 B = 0.007184 C = 0.005532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.086922 B = 3896.615782 C = 5059.870888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.638 4.638 3 S 2.604 3.396 4 O -0.950 6.950 5 O -0.972 6.972 6 N -0.983 5.983 7 C 0.154 3.846 8 H 0.089 0.911 9 C -0.185 4.185 10 C -0.138 4.138 11 C -0.017 4.017 12 C -0.522 4.522 13 H 0.073 0.927 14 C 0.068 3.932 15 N -0.901 5.901 16 Si 0.872 3.128 17 H -0.277 1.277 18 H -0.290 1.290 19 H -0.261 1.261 20 C 0.153 3.847 21 C -0.121 4.121 22 C 0.060 3.940 23 N -0.690 5.690 24 C 0.059 3.941 25 C -0.138 4.138 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.126 0.874 30 H 0.159 0.841 31 H 0.049 0.951 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.019 0.981 37 H 0.014 0.986 38 H 0.263 0.737 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.030 0.970 44 H 0.341 0.659 45 H 0.077 0.923 46 H 0.030 0.970 47 H 0.085 0.915 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.215 11.486 -12.330 16.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.768 4.768 3 S 2.700 3.300 4 O -0.940 6.940 5 O -0.962 6.962 6 N -0.818 5.818 7 C 0.049 3.951 8 H 0.107 0.893 9 C -0.243 4.243 10 C -0.177 4.177 11 C -0.055 4.055 12 C -0.560 4.560 13 H 0.091 0.909 14 C -0.133 4.133 15 N -0.540 5.540 16 Si 0.700 3.300 17 H -0.203 1.203 18 H -0.217 1.217 19 H -0.185 1.185 20 C 0.047 3.953 21 C -0.161 4.161 22 C -0.070 4.070 23 N -0.321 5.321 24 C -0.071 4.071 25 C -0.177 4.177 26 H 0.083 0.917 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.144 0.856 30 H 0.177 0.823 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.037 0.963 37 H 0.033 0.967 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.049 0.951 44 H 0.158 0.842 45 H 0.095 0.905 46 H 0.048 0.952 47 H 0.104 0.896 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.909 12.141 -11.523 16.764 hybrid contribution 0.124 -1.441 -1.714 2.242 sum 1.033 10.700 -13.236 17.052 Atomic orbital electron populations 1.21456 0.91154 1.04939 1.02486 1.30750 1.06516 1.26025 1.13498 1.05200 0.73127 0.77604 0.74103 1.93529 1.85037 1.75333 1.40148 1.93528 1.80399 1.70702 1.51615 1.57599 1.23750 1.88875 1.11591 1.20999 0.94149 0.95478 0.84483 0.89312 1.22598 1.04815 0.96202 1.00705 1.22200 1.02308 0.95092 0.98078 1.19761 0.96681 0.92279 0.96735 1.21182 1.43028 0.89887 1.01928 0.90906 1.25027 0.94886 0.96720 0.96677 1.69908 1.48157 1.00777 1.35151 0.86921 0.79530 0.78084 0.85493 1.20265 1.21660 1.18529 1.20838 0.96739 0.95251 0.82493 1.21955 0.99155 0.98026 0.96930 1.21923 0.96311 0.92132 0.96624 1.60269 1.30376 1.01948 1.39514 1.21925 0.94929 0.93699 0.96520 1.22243 1.00831 0.97506 0.97123 0.91679 0.89939 0.91407 0.85596 0.82279 0.93148 0.89017 0.91955 0.90565 0.91483 0.96270 0.96725 0.92762 0.89483 0.91084 0.90269 0.90655 0.95138 0.84176 0.90494 0.95213 0.89599 0.90249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.92 37.15 0.37 -1.53 16 2 C -0.64 -9.85 5.54 37.15 0.21 -9.64 16 3 S 2.60 42.03 4.57 -107.50 -0.49 41.54 16 4 O -0.95 -17.20 12.98 -57.54 -0.75 -17.95 16 5 O -0.97 -16.89 16.82 -57.54 -0.97 -17.86 16 6 N -0.98 -14.75 2.00 -100.17 -0.20 -14.95 16 7 C 0.15 2.38 1.69 -67.94 -0.12 2.26 16 8 H 0.09 1.30 6.05 -51.93 -0.31 0.99 16 9 C -0.18 -2.66 9.06 37.16 0.34 -2.33 16 10 C -0.14 -2.56 4.14 -26.73 -0.11 -2.67 16 11 C -0.02 -0.37 2.46 -27.88 -0.07 -0.44 16 12 C -0.52 -13.88 9.66 -34.44 -0.33 -14.21 16 13 H 0.07 2.12 7.99 -52.48 -0.42 1.70 16 14 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 15 N -0.90 -26.85 13.96 55.43 0.77 -26.08 16 16 Si 0.87 20.38 27.47 -169.99 -4.67 15.71 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.26 -5.49 5.62 56.52 0.32 -5.17 16 20 C 0.15 2.06 2.43 -67.81 -0.16 1.90 16 21 C -0.12 -1.43 5.43 -26.58 -0.14 -1.58 16 22 C 0.06 0.61 6.55 -3.76 -0.02 0.58 16 23 N -0.69 -7.22 6.85 -113.74 -0.78 -7.99 16 24 C 0.06 0.68 6.55 -3.83 -0.03 0.66 16 25 C -0.14 -1.91 4.42 -26.65 -0.12 -2.02 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.13 1.76 8.14 -51.92 -0.42 1.34 16 30 H 0.16 2.81 5.85 -51.93 -0.30 2.51 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 1.49 5.57 -51.93 -0.29 1.20 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.42 8.14 -51.92 -0.42 0.99 16 35 H 0.07 1.29 5.11 -51.93 -0.27 1.02 16 36 H 0.02 0.39 3.46 -51.92 -0.18 0.21 16 37 H 0.01 0.31 7.38 -51.93 -0.38 -0.07 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.09 1.15 7.10 -51.93 -0.37 0.78 16 40 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 41 H 0.08 0.96 7.20 -51.93 -0.37 0.59 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.34 2.84 8.90 -39.29 -0.35 2.49 16 45 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.09 1.29 6.49 -51.93 -0.34 0.95 16 48 H 0.08 1.20 6.05 -51.93 -0.31 0.89 16 LS Contribution 360.97 15.07 5.44 5.44 Total: -1.00 -31.51 360.97 -10.12 -41.64 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -8.19 Total: 7.75 kcal Atomic # 6 Polarization: -26.94 SS G_CDS: -0.29 Total: -27.23 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: -0.21 Total: -49.03 kcal Atomic # 8 Polarization: -34.10 SS G_CDS: -1.71 Total: -35.81 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.67 Total: 15.71 kcal Atomic # 16 Polarization: 42.03 SS G_CDS: -0.49 Total: 41.54 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.51 -10.12 -41.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172509966.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.759 kcal (2) G-P(sol) polarization free energy of solvation -31.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds