Wall clock time and date at job start Tue Mar 31 2020 12:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 S 1.81406 * 109.47243 * 2 1 4 4 O 1.42100 * 110.54079 * 76.75462 * 3 2 1 5 5 O 1.42090 * 110.54473 * 300.00141 * 3 2 1 6 6 N 1.65606 * 104.44930 * 188.37477 * 3 2 1 7 7 C 1.46495 * 119.99881 * 263.72494 * 6 3 2 8 8 H 1.09005 * 109.46716 * 173.82629 * 7 6 3 9 9 C 1.52995 * 109.47133 * 293.82298 * 7 6 3 10 10 C 1.52995 * 109.47320 * 53.82762 * 7 6 3 11 11 C 1.53000 * 109.47419 * 66.48092 * 10 7 6 12 12 C 1.50696 * 109.47459 * 180.02562 * 11 10 7 13 13 H 1.08004 * 119.99963 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00471 * 179.97438 * 12 11 10 15 15 N 1.31507 * 120.00470 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 119.99533 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47380 * 90.00072 * 16 14 12 18 18 H 1.48506 * 109.46989 * 210.00023 * 16 14 12 19 19 H 1.48500 * 109.47186 * 330.00023 * 16 14 12 20 20 C 1.46495 * 119.99530 * 83.72531 * 6 3 2 21 21 C 1.53124 * 109.52212 * 118.94743 * 20 6 3 22 22 C 1.53170 * 109.20976 * 177.55979 * 21 20 6 23 23 N 1.46847 * 109.55689 * 300.85996 * 22 21 20 24 24 C 1.46845 * 111.19937 * 61.73972 * 23 22 21 25 25 C 1.53038 * 109.52477 * 298.26038 * 24 23 22 26 26 H 1.08997 * 109.47269 * 59.99556 * 1 2 3 27 27 H 1.08995 * 109.47588 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46934 * 299.99962 * 1 2 3 29 29 H 1.09000 * 109.47567 * 240.00433 * 2 1 3 30 30 H 1.08997 * 109.47269 * 120.00444 * 2 1 3 31 31 H 1.08995 * 109.47445 * 307.22627 * 9 7 6 32 32 H 1.09003 * 109.47335 * 67.23472 * 9 7 6 33 33 H 1.09004 * 109.46865 * 187.22851 * 9 7 6 34 34 H 1.09007 * 109.47186 * 186.48068 * 10 7 6 35 35 H 1.08994 * 109.46988 * 306.47907 * 10 7 6 36 36 H 1.09007 * 109.46923 * 300.00137 * 11 10 7 37 37 H 1.08999 * 109.47402 * 59.99513 * 11 10 7 38 38 H 0.96995 * 120.00398 * 180.02562 * 15 14 12 39 39 H 1.08997 * 109.52639 * 358.81496 * 20 6 3 40 40 H 1.09009 * 109.49752 * 297.56025 * 21 20 6 41 41 H 1.08992 * 109.50383 * 57.67789 * 21 20 6 42 42 H 1.08995 * 109.44652 * 180.83029 * 22 21 20 43 43 H 1.09005 * 109.43776 * 60.87615 * 22 21 20 44 44 H 1.00896 * 111.00099 * 185.84078 * 23 22 21 45 45 H 1.09005 * 109.46276 * 178.24410 * 24 23 22 46 46 H 1.08997 * 109.45580 * 58.27304 * 24 23 22 47 47 H 1.08998 * 109.50098 * 299.23977 * 25 24 23 48 48 H 1.08999 * 109.53542 * 179.14326 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 2.0134 2.2820 1.2953 5 8 1.6736 2.4022 -1.1523 6 7 3.7682 1.5710 -0.2336 7 6 4.6764 1.5862 0.9158 8 1 5.6915 1.3747 0.5796 9 6 4.6358 2.9640 1.5797 10 6 4.2408 0.5211 1.9241 11 6 4.4349 -0.8685 1.3141 12 6 4.0053 -1.9176 2.3070 13 1 3.6316 -1.6227 3.2764 14 6 4.0893 -3.2539 1.9779 15 7 3.7140 -4.1693 2.8442 16 14 4.7351 -3.7639 0.3009 17 1 6.2075 -3.9440 0.3712 18 1 4.0989 -5.0424 -0.1066 19 1 4.4123 -2.7108 -0.6951 20 6 4.3050 1.4326 -1.5896 21 6 5.2344 2.6106 -1.8947 22 6 5.8389 2.4274 -3.2901 23 7 6.5858 1.1641 -3.3402 24 6 5.7038 0.0157 -3.0961 25 6 5.0962 0.1260 -1.6959 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 4.8208 3.7339 0.8307 32 1 3.6553 3.1222 2.0289 33 1 5.4024 3.0175 2.3528 34 1 4.8436 0.6085 2.8282 35 1 3.1895 0.6649 2.1731 36 1 3.8322 -0.9559 0.4100 37 1 5.4863 -1.0124 1.0650 38 1 3.7734 -5.1094 2.6129 39 1 3.4843 1.4208 -2.3068 40 1 4.6663 3.5404 -1.8617 41 1 6.0333 2.6452 -1.1541 42 1 6.5128 3.2566 -3.5054 43 1 5.0401 2.4066 -4.0316 44 1 7.0722 1.0662 -4.2188 45 1 6.2797 -0.9069 -3.1705 46 1 4.9059 0.0064 -3.8386 47 1 5.8930 0.1215 -0.9521 48 1 4.4297 -0.7184 -1.5202 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172509966.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:26 Heat of formation + Delta-G solvation = -105.074629 kcal Electronic energy + Delta-G solvation = -28139.169683 eV Core-core repulsion = 24547.711626 eV Total energy + Delta-G solvation = -3591.458058 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.32100 -38.62078 -37.54644 -36.97615 -35.33187 -34.07085 -33.67912 -31.95896 -31.49202 -30.03520 -27.11427 -25.01760 -24.22644 -23.87186 -23.14846 -22.34100 -20.43818 -19.68011 -18.94375 -18.30345 -17.70419 -17.24721 -17.23475 -16.32564 -16.20590 -15.50562 -15.34429 -15.09387 -14.92930 -14.74178 -14.70721 -14.61593 -14.31414 -14.01125 -13.81998 -13.55652 -13.38249 -13.30616 -13.18060 -13.05497 -12.89158 -12.80501 -12.66183 -12.40189 -12.11529 -12.07200 -11.95683 -11.92200 -11.70536 -11.58240 -11.51691 -11.30191 -11.14775 -10.95403 -10.69673 -9.82593 -9.32753 -8.24498 -6.27847 -0.71472 1.37077 1.38307 1.48899 1.61795 2.38399 2.79183 3.10474 3.16051 3.35421 3.50095 3.76084 3.85088 3.92202 3.97836 4.08969 4.25716 4.31447 4.33803 4.35732 4.45188 4.48092 4.53233 4.64807 4.71527 4.75701 4.78021 4.93010 4.96218 4.97151 5.00932 5.02558 5.04259 5.06579 5.20290 5.29671 5.33494 5.48249 5.52652 5.55802 5.69788 5.73396 5.84642 6.11525 6.35242 6.59164 6.81575 7.36432 8.92221 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.010746 B = 0.007184 C = 0.005532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.086922 B = 3896.615782 C = 5059.870888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.638 4.638 3 S 2.611 3.389 4 O -0.974 6.974 5 O -0.983 6.983 6 N -0.982 5.982 7 C 0.163 3.837 8 H 0.104 0.896 9 C -0.182 4.182 10 C -0.137 4.137 11 C -0.008 4.008 12 C -0.525 4.525 13 H 0.028 0.972 14 C 0.006 3.994 15 N -0.954 5.954 16 Si 0.934 3.066 17 H -0.272 1.272 18 H -0.294 1.294 19 H -0.222 1.222 20 C 0.148 3.852 21 C -0.120 4.120 22 C 0.063 3.937 23 N -0.695 5.695 24 C 0.061 3.939 25 C -0.139 4.139 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.069 0.931 29 H 0.142 0.858 30 H 0.134 0.866 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.037 0.963 37 H 0.022 0.978 38 H 0.263 0.737 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.036 0.964 44 H 0.355 0.645 45 H 0.081 0.919 46 H 0.040 0.960 47 H 0.074 0.926 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.366 12.583 -15.456 20.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.769 4.769 3 S 2.707 3.293 4 O -0.965 6.965 5 O -0.973 6.973 6 N -0.818 5.818 7 C 0.058 3.942 8 H 0.122 0.878 9 C -0.241 4.241 10 C -0.176 4.176 11 C -0.046 4.046 12 C -0.563 4.563 13 H 0.046 0.954 14 C -0.191 4.191 15 N -0.595 5.595 16 Si 0.758 3.242 17 H -0.197 1.197 18 H -0.220 1.220 19 H -0.145 1.145 20 C 0.042 3.958 21 C -0.159 4.159 22 C -0.067 4.067 23 N -0.328 5.328 24 C -0.069 4.069 25 C -0.179 4.179 26 H 0.102 0.898 27 H 0.110 0.890 28 H 0.088 0.912 29 H 0.161 0.839 30 H 0.152 0.848 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.110 0.890 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.110 0.890 43 H 0.054 0.946 44 H 0.174 0.826 45 H 0.099 0.901 46 H 0.058 0.942 47 H 0.093 0.907 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.067 13.283 -14.668 19.896 hybrid contribution -0.272 -1.768 -0.639 1.900 sum 1.795 11.515 -15.307 19.238 Atomic orbital electron populations 1.21606 0.89770 1.05936 1.03629 1.30722 1.08064 1.25121 1.12989 1.04900 0.73385 0.77668 0.73296 1.93505 1.85536 1.76156 1.41283 1.93508 1.80816 1.71238 1.51746 1.57536 1.23136 1.88852 1.12298 1.20858 0.94623 0.94843 0.83881 0.87815 1.22555 1.04219 0.95876 1.01425 1.22132 1.01683 0.94880 0.98862 1.19668 0.96899 0.92048 0.95951 1.21515 1.42012 0.91457 1.01306 0.95392 1.25969 0.95293 0.96690 1.01104 1.70083 1.50413 1.01182 1.37855 0.85916 0.78795 0.78433 0.81053 1.19742 1.22047 1.14462 1.21048 0.97227 0.96072 0.81420 1.21951 0.98700 0.97174 0.98115 1.21926 0.96809 0.92560 0.95430 1.60220 1.30262 1.01671 1.40654 1.21871 0.95439 0.94374 0.95211 1.22224 1.00246 0.96950 0.98458 0.89751 0.89048 0.91222 0.83947 0.84765 0.91483 0.90960 0.90551 0.91172 0.92692 0.94536 0.96014 0.92856 0.89019 0.91044 0.90542 0.88954 0.94594 0.82572 0.90091 0.94175 0.90733 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.88 9.92 71.98 0.71 -3.16 16 2 C -0.64 -19.12 5.54 71.98 0.40 -18.72 16 3 S 2.61 81.66 4.57 -56.49 -0.26 81.41 16 4 O -0.97 -35.31 12.98 -127.65 -1.66 -36.96 16 5 O -0.98 -32.50 16.82 -127.65 -2.15 -34.65 16 6 N -0.98 -27.77 2.00 -470.83 -0.94 -28.71 16 7 C 0.16 4.79 1.69 44.99 0.08 4.87 16 8 H 0.10 2.78 6.05 -2.38 -0.01 2.77 16 9 C -0.18 -4.98 9.06 71.98 0.65 -4.33 16 10 C -0.14 -5.07 4.14 30.59 0.13 -4.95 16 11 C -0.01 -0.36 2.46 29.85 0.07 -0.28 16 12 C -0.52 -28.62 9.66 25.60 0.25 -28.38 16 13 H 0.03 1.72 7.99 -2.91 -0.02 1.70 16 14 C 0.01 0.32 5.47 84.66 0.46 0.79 16 15 N -0.95 -58.74 13.96 21.45 0.30 -58.44 16 16 Si 0.93 41.32 27.47 68.60 1.88 43.21 16 17 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 18 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 19 H -0.22 -8.34 5.62 99.48 0.56 -7.78 16 20 C 0.15 3.58 2.43 45.07 0.11 3.69 16 21 C -0.12 -2.46 5.43 30.69 0.17 -2.30 16 22 C 0.06 1.03 6.55 86.37 0.57 1.60 16 23 N -0.69 -11.96 6.85 -513.76 -3.52 -15.48 16 24 C 0.06 1.19 6.55 86.33 0.57 1.76 16 25 C -0.14 -3.43 4.42 30.65 0.14 -3.30 16 26 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.14 3.70 8.14 -2.39 -0.02 3.68 16 30 H 0.13 4.79 5.85 -2.39 -0.01 4.78 16 31 H 0.07 1.60 8.14 -2.39 -0.02 1.59 16 32 H 0.07 2.31 5.57 -2.39 -0.01 2.30 16 33 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 35 H 0.05 2.17 5.11 -2.39 -0.01 2.16 16 36 H 0.04 1.41 3.46 -2.38 -0.01 1.41 16 37 H 0.02 0.89 7.38 -2.39 -0.02 0.87 16 38 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 39 H 0.09 2.15 7.10 -2.39 -0.02 2.14 16 40 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 41 H 0.08 1.62 7.20 -2.39 -0.02 1.60 16 42 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.04 0.57 8.14 -2.38 -0.02 0.55 16 44 H 0.35 4.54 8.90 -89.70 -0.80 3.74 16 45 H 0.08 1.52 8.14 -2.38 -0.02 1.51 16 46 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.07 2.00 6.49 -2.39 -0.02 1.99 16 48 H 0.07 1.77 6.05 -2.39 -0.01 1.76 16 Total: -1.00 -69.22 360.97 -2.04 -71.26 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: 0.00 Total: 31.08 kcal Atomic # 6 Polarization: -57.01 SS G_CDS: 4.29 Total: -52.71 kcal Atomic # 7 Polarization: -98.47 SS G_CDS: -4.16 Total: -102.63 kcal Atomic # 8 Polarization: -67.81 SS G_CDS: -3.80 Total: -71.61 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 1.88 Total: 43.21 kcal Atomic # 16 Polarization: 81.66 SS G_CDS: -0.26 Total: 81.41 kcal Total: -69.22 -2.04 -71.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172509966.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.817 kcal (2) G-P(sol) polarization free energy of solvation -69.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds