Wall clock time and date at job start Tue Mar 31 2020 12:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46493 * 119.99898 * 2 1 4 4 S 1.65601 * 120.00065 * 179.97438 * 2 1 3 5 5 O 1.42106 * 106.40263 * 330.00294 * 4 2 1 6 6 O 1.42091 * 106.40267 * 197.08100 * 4 2 1 7 7 N 1.65597 * 107.21840 * 83.54171 * 4 2 1 8 8 C 1.46500 * 120.00032 * 89.99821 * 7 4 2 9 9 C 1.50706 * 109.46953 * 264.99801 * 8 7 4 10 10 H 1.07999 * 120.00193 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99398 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99350 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00608 * 0.02562 * 11 9 8 14 14 H 1.48493 * 109.47326 * 270.00340 * 13 11 9 15 15 H 1.48506 * 109.46545 * 30.00090 * 13 11 9 16 16 H 1.48498 * 109.47210 * 149.99801 * 13 11 9 17 17 C 1.46512 * 119.99992 * 270.00132 * 7 4 2 18 18 C 1.53011 * 109.46703 * 239.99806 * 17 7 4 19 19 C 1.52994 * 109.45608 * 164.04705 * 18 17 7 20 20 C 1.52979 * 109.51026 * 315.98581 * 19 18 17 21 21 C 1.53015 * 109.46950 * 112.93759 * 20 19 18 22 22 C 1.53005 * 109.42955 * 284.04266 * 21 20 19 23 23 C 1.52985 * 109.48475 * 75.96141 * 22 21 20 24 24 C 1.52991 * 109.50683 * 247.06315 * 23 22 21 25 25 H 1.08998 * 109.46813 * 239.99486 * 1 2 3 26 26 H 1.08995 * 109.46937 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.46764 * 120.00282 * 1 2 3 28 28 H 1.09000 * 109.47287 * 269.99739 * 3 2 1 29 29 H 1.09007 * 109.47234 * 30.00362 * 3 2 1 30 30 H 1.09002 * 109.47244 * 149.99549 * 3 2 1 31 31 H 1.09000 * 109.47175 * 145.00230 * 8 7 4 32 32 H 1.08993 * 109.47452 * 25.00020 * 8 7 4 33 33 H 0.97005 * 119.99661 * 179.97438 * 12 11 9 34 34 H 1.08991 * 109.46868 * 0.02562 * 17 7 4 35 35 H 1.09002 * 109.47216 * 284.04175 * 18 17 7 36 36 H 1.08995 * 109.47424 * 44.04967 * 18 17 7 37 37 H 1.08998 * 109.46264 * 195.97514 * 19 18 17 38 38 H 1.09003 * 109.46074 * 75.99435 * 19 18 17 39 39 H 1.09003 * 109.47466 * 352.93821 * 20 19 18 40 40 H 1.08998 * 109.47574 * 232.93390 * 20 19 18 41 41 H 1.09002 * 109.47532 * 164.05841 * 21 20 19 42 42 H 1.08991 * 109.48291 * 44.03415 * 21 20 19 43 43 H 1.08994 * 109.47098 * 315.95506 * 22 21 20 44 44 H 1.08999 * 109.46252 * 195.96716 * 22 21 20 45 45 H 1.09004 * 109.46334 * 127.05160 * 23 22 21 46 46 H 1.09003 * 109.46495 * 7.07194 * 23 22 21 47 47 H 1.09006 * 109.47418 * 284.01796 * 24 23 22 48 48 H 1.09002 * 109.48121 * 164.00958 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2931 -1.4341 0.0006 5 8 1.4713 -2.3717 0.6826 6 8 3.6221 -1.1300 0.4009 7 7 2.3841 -1.9483 -1.5708 8 6 3.5161 -1.5454 -2.4090 9 6 3.1400 -0.3243 -3.2080 10 1 2.1563 0.1087 -3.1018 11 6 4.0522 0.2408 -4.0739 12 7 3.7241 1.3067 -4.7708 13 14 5.7539 -0.5076 -4.2571 14 1 6.6765 0.1140 -3.2735 15 1 5.6803 -1.9703 -4.0111 16 1 6.2574 -0.2616 -5.6323 17 6 1.3325 -2.8061 -2.1230 18 6 1.9439 -4.1319 -2.5808 19 6 0.8320 -5.1636 -2.7811 20 6 -0.1511 -5.0888 -1.6115 21 6 -1.5020 -4.5740 -2.1129 22 6 -1.4163 -3.0644 -2.3473 23 6 -0.6501 -2.7919 -3.6431 24 6 0.6784 -2.1070 -3.3166 25 1 -0.3633 -0.5139 0.8899 26 1 -0.3633 1.0276 0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 2.3792 1.5833 -1.0277 29 1 1.6084 2.0284 0.5139 30 1 3.1499 1.1384 0.5139 31 1 3.7733 -2.3587 -3.0877 32 1 4.3732 -1.3157 -1.7761 33 1 4.3659 1.7045 -5.3797 34 1 0.5805 -2.9973 -1.3577 35 1 2.4743 -3.9820 -3.5212 36 1 2.6409 -4.4912 -1.8238 37 1 1.2669 -6.1620 -2.8267 38 1 0.3055 -4.9539 -3.7122 39 1 0.2376 -4.4095 -0.8528 40 1 -0.2783 -6.0814 -1.1795 41 1 -2.2699 -4.7831 -1.3680 42 1 -1.7570 -5.0730 -3.0477 43 1 -0.8958 -2.5961 -1.5121 44 1 -2.4219 -2.6515 -2.4261 45 1 -1.2444 -2.1437 -4.2870 46 1 -0.4565 -3.7343 -4.1556 47 1 0.4969 -1.0607 -3.0702 48 1 1.3404 -2.1672 -4.1805 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251071631.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:28 Heat of formation + Delta-G solvation = -71.932723 kcal Electronic energy + Delta-G solvation = -28483.214050 eV Core-core repulsion = 24893.193133 eV Total energy + Delta-G solvation = -3590.020917 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.40577 -36.73293 -35.61662 -35.43699 -35.26872 -32.63866 -32.47546 -31.05171 -27.93700 -27.57075 -25.63000 -25.26665 -24.16021 -22.39853 -21.24026 -20.44857 -19.20872 -18.16075 -17.50237 -17.00193 -16.63440 -15.99346 -15.28070 -14.63896 -14.34128 -14.09453 -14.01626 -13.89190 -13.84166 -13.53157 -13.06965 -12.87910 -12.67179 -12.57605 -12.23735 -12.04579 -11.90752 -11.85318 -11.69923 -11.40822 -11.27339 -11.19650 -11.11025 -11.07908 -10.92654 -10.79178 -10.69343 -10.49424 -10.36035 -10.18539 -10.14152 -9.65593 -9.48061 -9.22072 -8.62282 -8.57593 -8.04449 -6.13501 -4.12013 1.22536 3.26718 3.33199 3.37515 3.43802 4.04902 4.36992 4.78385 4.88653 5.05498 5.05714 5.16874 5.19646 5.30657 5.40659 5.43241 5.48811 5.59463 5.62312 5.66326 5.73592 5.83303 5.86465 5.95405 6.01031 6.06125 6.16256 6.17483 6.27610 6.29379 6.34899 6.35842 6.39390 6.44896 6.49047 6.59589 6.64979 6.72288 6.84178 6.92115 6.94059 7.06560 7.26377 7.49323 7.59726 8.44708 8.91611 9.48180 10.98473 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.011948 B = 0.007151 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.978117 B = 3914.832792 C = 4868.293713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -1.010 6.010 3 C 0.089 3.911 4 S 2.785 3.215 5 O -0.997 6.997 6 O -0.982 6.982 7 N -0.983 5.983 8 C 0.214 3.786 9 C -0.531 4.531 10 H 0.085 0.915 11 C 0.076 3.924 12 N -0.895 5.895 13 Si 0.865 3.135 14 H -0.273 1.273 15 H -0.265 1.265 16 H -0.286 1.286 17 C 0.139 3.861 18 C -0.125 4.125 19 C -0.124 4.124 20 C -0.137 4.137 21 C -0.116 4.116 22 C -0.133 4.133 23 C -0.128 4.128 24 C -0.118 4.118 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.037 0.963 32 H 0.039 0.961 33 H 0.264 0.736 34 H 0.106 0.894 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.473 -7.299 5.067 12.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.850 5.850 3 C -0.056 4.056 4 S 2.795 3.205 5 O -0.981 6.981 6 O -0.966 6.966 7 N -0.822 5.822 8 C 0.090 3.910 9 C -0.570 4.570 10 H 0.103 0.897 11 C -0.127 4.127 12 N -0.533 5.533 13 Si 0.692 3.308 14 H -0.199 1.199 15 H -0.189 1.189 16 H -0.212 1.212 17 C 0.033 3.967 18 C -0.164 4.164 19 C -0.161 4.161 20 C -0.174 4.174 21 C -0.154 4.154 22 C -0.170 4.170 23 C -0.166 4.166 24 C -0.157 4.157 25 H 0.076 0.924 26 H 0.093 0.907 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.123 0.877 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.023 -7.565 5.721 13.091 hybrid contribution 0.858 0.104 -0.736 1.136 sum -8.165 -7.461 4.984 12.131 Atomic orbital electron populations 1.21437 0.79425 1.03158 1.01091 1.57607 1.14618 1.22677 1.90079 1.21577 0.96163 0.84338 1.03531 1.01724 0.72810 0.72515 0.73474 1.93521 1.70479 1.61279 1.72795 1.93542 1.36556 1.84721 1.81767 1.57664 1.32318 1.61473 1.30767 1.19551 0.83952 0.96539 0.90972 1.21496 1.02028 1.10306 1.23178 0.89701 1.24829 0.98011 0.94563 0.95286 1.69887 1.35536 1.21118 1.26794 0.87023 0.85600 0.80587 0.77632 1.19894 1.18914 1.21234 1.21390 0.88905 0.89093 0.97310 1.21944 0.97806 0.94595 1.02095 1.21832 0.96778 0.98461 0.99075 1.21916 0.95342 1.01303 0.98860 1.21690 0.97015 0.95966 1.00701 1.21889 1.00051 0.96103 0.98940 1.21918 0.96748 1.01010 0.96950 1.21986 0.95174 0.99607 0.98950 0.92376 0.90691 0.92637 0.90932 0.92018 0.90733 0.94534 0.94307 0.92657 0.87653 0.91102 0.92155 0.92531 0.90743 0.90025 0.92586 0.92579 0.92057 0.91113 0.92516 0.92416 0.91246 0.90964 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.32 10.39 59.85 0.62 1.94 16 2 N -1.01 -17.40 3.64 -129.20 -0.47 -17.87 16 3 C 0.09 1.49 10.59 59.84 0.63 2.12 16 4 S 2.79 55.21 6.10 -107.50 -0.66 54.55 16 5 O -1.00 -19.86 15.96 -57.17 -0.91 -20.77 16 6 O -0.98 -22.26 15.20 -57.17 -0.87 -23.13 16 7 N -0.98 -19.46 2.79 -108.55 -0.30 -19.77 16 8 C 0.21 4.84 4.20 -5.19 -0.02 4.82 16 9 C -0.53 -13.39 8.57 -34.44 -0.30 -13.69 16 10 H 0.09 2.26 6.75 -52.49 -0.35 1.90 16 11 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 12 N -0.90 -25.46 13.96 55.43 0.77 -24.69 16 13 Si 0.86 20.57 27.47 -169.99 -4.67 15.90 16 14 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 17 C 0.14 2.35 1.91 -67.91 -0.13 2.22 16 18 C -0.13 -1.95 4.58 -26.73 -0.12 -2.07 16 19 C -0.12 -1.57 5.48 -26.75 -0.15 -1.71 16 20 C -0.14 -1.70 5.47 -26.73 -0.15 -1.85 16 21 C -0.12 -1.29 5.59 -26.72 -0.15 -1.44 16 22 C -0.13 -1.61 5.47 -26.74 -0.15 -1.76 16 23 C -0.13 -1.70 5.48 -26.74 -0.15 -1.85 16 24 C -0.12 -1.97 3.85 -26.73 -0.10 -2.08 16 25 H 0.06 0.75 7.99 -51.93 -0.41 0.33 16 26 H 0.07 0.87 7.79 -51.93 -0.40 0.47 16 27 H 0.06 0.75 7.53 -51.93 -0.39 0.36 16 28 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.06 0.81 7.92 -51.93 -0.41 0.40 16 30 H 0.07 1.28 7.00 -51.93 -0.36 0.92 16 31 H 0.04 0.82 5.90 -51.93 -0.31 0.51 16 32 H 0.04 0.94 6.34 -51.93 -0.33 0.61 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.11 1.71 1.60 -51.93 -0.08 1.63 16 35 H 0.07 1.15 7.14 -51.93 -0.37 0.77 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.89 4.69 -51.93 -0.24 0.65 16 39 H 0.08 1.19 5.47 -51.93 -0.28 0.91 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.62 7.47 -51.93 -0.39 0.24 16 43 H 0.07 0.95 4.86 -51.93 -0.25 0.70 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.07 0.86 4.69 -51.93 -0.24 0.62 16 47 H 0.07 1.33 6.97 -51.93 -0.36 0.97 16 48 H 0.08 1.49 7.52 -51.93 -0.39 1.10 16 LS Contribution 355.86 15.07 5.36 5.36 Total: -1.00 -29.86 355.86 -9.71 -39.57 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -7.72 Total: 4.24 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: -0.25 Total: -13.41 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: 0.00 Total: -62.32 kcal Atomic # 8 Polarization: -42.11 SS G_CDS: -1.78 Total: -43.90 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.90 kcal Atomic # 16 Polarization: 55.21 SS G_CDS: -0.66 Total: 54.55 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.86 -9.71 -39.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251071631.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.358 kcal (2) G-P(sol) polarization free energy of solvation -29.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds