Wall clock time and date at job start Tue Mar 31 2020 12:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46493 * 119.99898 * 2 1 4 4 S 1.65601 * 120.00065 * 179.97438 * 2 1 3 5 5 O 1.42106 * 106.40263 * 330.00294 * 4 2 1 6 6 O 1.42091 * 106.40267 * 197.08100 * 4 2 1 7 7 N 1.65597 * 107.21840 * 83.54171 * 4 2 1 8 8 C 1.46500 * 120.00032 * 89.99821 * 7 4 2 9 9 C 1.50706 * 109.46953 * 264.99801 * 8 7 4 10 10 H 1.07999 * 120.00193 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99398 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99350 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00608 * 0.02562 * 11 9 8 14 14 H 1.48493 * 109.47326 * 270.00340 * 13 11 9 15 15 H 1.48506 * 109.46545 * 30.00090 * 13 11 9 16 16 H 1.48498 * 109.47210 * 149.99801 * 13 11 9 17 17 C 1.46512 * 119.99992 * 270.00132 * 7 4 2 18 18 C 1.53011 * 109.46703 * 239.99806 * 17 7 4 19 19 C 1.52994 * 109.45608 * 164.04705 * 18 17 7 20 20 C 1.52979 * 109.51026 * 315.98581 * 19 18 17 21 21 C 1.53015 * 109.46950 * 112.93759 * 20 19 18 22 22 C 1.53005 * 109.42955 * 284.04266 * 21 20 19 23 23 C 1.52985 * 109.48475 * 75.96141 * 22 21 20 24 24 C 1.52991 * 109.50683 * 247.06315 * 23 22 21 25 25 H 1.08998 * 109.46813 * 239.99486 * 1 2 3 26 26 H 1.08995 * 109.46937 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.46764 * 120.00282 * 1 2 3 28 28 H 1.09000 * 109.47287 * 269.99739 * 3 2 1 29 29 H 1.09007 * 109.47234 * 30.00362 * 3 2 1 30 30 H 1.09002 * 109.47244 * 149.99549 * 3 2 1 31 31 H 1.09000 * 109.47175 * 145.00230 * 8 7 4 32 32 H 1.08993 * 109.47452 * 25.00020 * 8 7 4 33 33 H 0.97005 * 119.99661 * 179.97438 * 12 11 9 34 34 H 1.08991 * 109.46868 * 0.02562 * 17 7 4 35 35 H 1.09002 * 109.47216 * 284.04175 * 18 17 7 36 36 H 1.08995 * 109.47424 * 44.04967 * 18 17 7 37 37 H 1.08998 * 109.46264 * 195.97514 * 19 18 17 38 38 H 1.09003 * 109.46074 * 75.99435 * 19 18 17 39 39 H 1.09003 * 109.47466 * 352.93821 * 20 19 18 40 40 H 1.08998 * 109.47574 * 232.93390 * 20 19 18 41 41 H 1.09002 * 109.47532 * 164.05841 * 21 20 19 42 42 H 1.08991 * 109.48291 * 44.03415 * 21 20 19 43 43 H 1.08994 * 109.47098 * 315.95506 * 22 21 20 44 44 H 1.08999 * 109.46252 * 195.96716 * 22 21 20 45 45 H 1.09004 * 109.46334 * 127.05160 * 23 22 21 46 46 H 1.09003 * 109.46495 * 7.07194 * 23 22 21 47 47 H 1.09006 * 109.47418 * 284.01796 * 24 23 22 48 48 H 1.09002 * 109.48121 * 164.00958 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2931 -1.4341 0.0006 5 8 1.4713 -2.3717 0.6826 6 8 3.6221 -1.1300 0.4009 7 7 2.3841 -1.9483 -1.5708 8 6 3.5161 -1.5454 -2.4090 9 6 3.1400 -0.3243 -3.2080 10 1 2.1563 0.1087 -3.1018 11 6 4.0522 0.2408 -4.0739 12 7 3.7241 1.3067 -4.7708 13 14 5.7539 -0.5076 -4.2571 14 1 6.6765 0.1140 -3.2735 15 1 5.6803 -1.9703 -4.0111 16 1 6.2574 -0.2616 -5.6323 17 6 1.3325 -2.8061 -2.1230 18 6 1.9439 -4.1319 -2.5808 19 6 0.8320 -5.1636 -2.7811 20 6 -0.1511 -5.0888 -1.6115 21 6 -1.5020 -4.5740 -2.1129 22 6 -1.4163 -3.0644 -2.3473 23 6 -0.6501 -2.7919 -3.6431 24 6 0.6784 -2.1070 -3.3166 25 1 -0.3633 -0.5139 0.8899 26 1 -0.3633 1.0276 0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 2.3792 1.5833 -1.0277 29 1 1.6084 2.0284 0.5139 30 1 3.1499 1.1384 0.5139 31 1 3.7733 -2.3587 -3.0877 32 1 4.3732 -1.3157 -1.7761 33 1 4.3659 1.7045 -5.3797 34 1 0.5805 -2.9973 -1.3577 35 1 2.4743 -3.9820 -3.5212 36 1 2.6409 -4.4912 -1.8238 37 1 1.2669 -6.1620 -2.8267 38 1 0.3055 -4.9539 -3.7122 39 1 0.2376 -4.4095 -0.8528 40 1 -0.2783 -6.0814 -1.1795 41 1 -2.2699 -4.7831 -1.3680 42 1 -1.7570 -5.0730 -3.0477 43 1 -0.8958 -2.5961 -1.5121 44 1 -2.4219 -2.6515 -2.4261 45 1 -1.2444 -2.1437 -4.2870 46 1 -0.4565 -3.7343 -4.1556 47 1 0.4969 -1.0607 -3.0702 48 1 1.3404 -2.1672 -4.1805 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001251071631.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:27 Heat of formation + Delta-G solvation = -91.105091 kcal Electronic energy + Delta-G solvation = -28484.045426 eV Core-core repulsion = 24893.193133 eV Total energy + Delta-G solvation = -3590.852293 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.61930 -38.38477 -37.02080 -36.89342 -36.87766 -34.50420 -33.64756 -32.41764 -29.67758 -28.88604 -26.79132 -26.55807 -25.50843 -24.12265 -22.43131 -21.57776 -20.56667 -19.61593 -19.07117 -18.76628 -18.32674 -17.51756 -16.65358 -16.14487 -15.83974 -15.51582 -15.36922 -15.03560 -14.98984 -14.87967 -14.54787 -14.31173 -14.04758 -14.00123 -13.80550 -13.59132 -13.45535 -13.25416 -13.21625 -12.97751 -12.75858 -12.60150 -12.49385 -12.41322 -12.32286 -12.23214 -11.97865 -11.90241 -11.80650 -11.62416 -11.42261 -11.15233 -10.72518 -10.69946 -10.48220 -9.96785 -9.67239 -8.22485 -6.22752 -0.33713 1.35143 1.39650 1.45406 1.91995 2.37003 2.50086 3.11782 3.32041 3.65593 3.90301 4.01287 4.03449 4.18256 4.28598 4.32232 4.34214 4.40201 4.46162 4.50137 4.53454 4.55126 4.75470 4.82080 4.86584 4.90408 4.96852 5.05344 5.07068 5.08014 5.11038 5.15247 5.18137 5.25228 5.27598 5.35044 5.39257 5.42887 5.53549 5.56730 5.61047 5.66986 5.73491 5.78972 5.96389 6.39569 6.82165 7.39391 8.91844 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.011948 B = 0.007151 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.978117 B = 3914.832792 C = 4868.293713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -1.011 6.011 3 C 0.090 3.910 4 S 2.789 3.211 5 O -0.998 6.998 6 O -1.014 7.014 7 N -0.988 5.988 8 C 0.223 3.777 9 C -0.513 4.513 10 H 0.064 0.936 11 C 0.026 3.974 12 N -0.935 5.935 13 Si 0.911 3.089 14 H -0.276 1.276 15 H -0.249 1.249 16 H -0.283 1.283 17 C 0.133 3.867 18 C -0.128 4.128 19 C -0.118 4.118 20 C -0.138 4.138 21 C -0.113 4.113 22 C -0.132 4.132 23 C -0.122 4.122 24 C -0.109 4.109 25 H 0.071 0.929 26 H 0.101 0.899 27 H 0.055 0.945 28 H 0.044 0.956 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.042 0.958 32 H 0.027 0.973 33 H 0.263 0.737 34 H 0.119 0.881 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.055 0.945 44 H 0.074 0.926 45 H 0.062 0.938 46 H 0.083 0.917 47 H 0.047 0.953 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.071 -8.915 5.474 15.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.852 5.852 3 C -0.055 4.055 4 S 2.799 3.201 5 O -0.982 6.982 6 O -0.998 6.998 7 N -0.826 5.826 8 C 0.098 3.902 9 C -0.552 4.552 10 H 0.082 0.918 11 C -0.173 4.173 12 N -0.576 5.576 13 Si 0.737 3.263 14 H -0.201 1.201 15 H -0.172 1.172 16 H -0.209 1.209 17 C 0.028 3.972 18 C -0.167 4.167 19 C -0.156 4.156 20 C -0.175 4.175 21 C -0.150 4.150 22 C -0.169 4.169 23 C -0.160 4.160 24 C -0.149 4.149 25 H 0.090 0.910 26 H 0.120 0.880 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.136 0.864 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.073 0.927 44 H 0.093 0.907 45 H 0.081 0.919 46 H 0.101 0.899 47 H 0.066 0.934 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.640 -9.213 6.138 15.355 hybrid contribution 1.262 0.645 -0.810 1.633 sum -9.378 -8.568 5.327 13.775 Atomic orbital electron populations 1.21725 0.77230 1.05213 1.01776 1.57483 1.16125 1.21841 1.89765 1.21594 0.96728 0.85016 1.02168 1.01467 0.72316 0.72945 0.73378 1.93510 1.70157 1.61718 1.72792 1.93494 1.38639 1.85285 1.82384 1.57656 1.32397 1.62182 1.30399 1.19266 0.84613 0.95562 0.90778 1.21606 1.00835 1.10458 1.22341 0.91808 1.25479 1.01254 0.95068 0.95497 1.69997 1.36731 1.22754 1.28128 0.86251 0.81789 0.80792 0.77505 1.20140 1.17235 1.20887 1.21683 0.88522 0.89273 0.97703 1.21963 0.98813 0.94733 1.01186 1.21826 0.95919 0.98132 0.99706 1.21911 0.95858 1.01694 0.98039 1.21693 0.96533 0.94882 1.01914 1.21881 1.00524 0.97196 0.97327 1.21885 0.94801 1.01277 0.98004 1.21833 0.96683 0.98703 0.97641 0.91036 0.88042 0.92623 0.93721 0.87953 0.91718 0.93976 0.95539 0.92742 0.86362 0.92132 0.92865 0.90928 0.89775 0.92450 0.90988 0.91163 0.90436 0.92665 0.90721 0.91930 0.89916 0.93385 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.24 10.39 127.77 1.33 3.57 16 2 N -1.01 -34.40 3.64 -562.68 -2.05 -36.45 16 3 C 0.09 2.99 10.59 127.77 1.35 4.35 16 4 S 2.79 110.91 6.10 -56.49 -0.34 110.57 16 5 O -1.00 -39.12 15.96 -128.00 -2.04 -41.17 16 6 O -1.01 -46.66 15.20 -128.00 -1.95 -48.61 16 7 N -0.99 -39.56 2.79 -497.36 -1.39 -40.95 16 8 C 0.22 10.26 4.20 85.63 0.36 10.62 16 9 C -0.51 -26.57 8.57 25.60 0.22 -26.35 16 10 H 0.06 3.53 6.75 -2.91 -0.02 3.51 16 11 C 0.03 1.41 5.47 84.66 0.46 1.87 16 12 N -0.94 -54.61 13.96 21.45 0.30 -54.31 16 13 Si 0.91 42.61 27.47 68.60 1.88 44.50 16 14 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 15 H -0.25 -10.87 6.54 99.48 0.65 -10.22 16 16 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 17 C 0.13 4.47 1.91 45.00 0.09 4.56 16 18 C -0.13 -3.88 4.58 30.60 0.14 -3.74 16 19 C -0.12 -2.71 5.48 30.59 0.17 -2.54 16 20 C -0.14 -3.05 5.47 30.59 0.17 -2.88 16 21 C -0.11 -2.12 5.59 30.60 0.17 -1.95 16 22 C -0.13 -2.88 5.47 30.59 0.17 -2.71 16 23 C -0.12 -3.04 5.48 30.59 0.17 -2.87 16 24 C -0.11 -3.68 3.85 30.59 0.12 -3.56 16 25 H 0.07 1.69 7.99 -2.39 -0.02 1.68 16 26 H 0.10 2.12 7.79 -2.39 -0.02 2.10 16 27 H 0.06 1.46 7.53 -2.39 -0.02 1.44 16 28 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.10 2.52 7.92 -2.38 -0.02 2.50 16 30 H 0.06 2.26 7.00 -2.39 -0.02 2.24 16 31 H 0.04 1.90 5.90 -2.39 -0.01 1.88 16 32 H 0.03 1.30 6.34 -2.39 -0.02 1.29 16 33 H 0.26 14.65 8.31 -92.70 -0.77 13.88 16 34 H 0.12 3.75 1.60 -2.39 0.00 3.75 16 35 H 0.06 1.94 7.14 -2.39 -0.02 1.92 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.66 16 37 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.08 1.77 4.69 -2.39 -0.01 1.76 16 39 H 0.06 1.57 5.47 -2.39 -0.01 1.56 16 40 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.08 1.24 7.47 -2.39 -0.02 1.23 16 43 H 0.05 1.39 4.86 -2.39 -0.01 1.38 16 44 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 46 H 0.08 1.85 4.69 -2.39 -0.01 1.84 16 47 H 0.05 1.82 6.97 -2.38 -0.02 1.80 16 48 H 0.05 1.98 7.52 -2.39 -0.02 1.96 16 Total: -1.00 -65.25 355.86 0.22 -65.03 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.90 Total: 23.05 kcal Atomic # 6 Polarization: -26.57 SS G_CDS: 4.91 Total: -21.66 kcal Atomic # 7 Polarization: -128.57 SS G_CDS: -3.14 Total: -131.70 kcal Atomic # 8 Polarization: -85.79 SS G_CDS: -3.99 Total: -89.77 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 1.88 Total: 44.50 kcal Atomic # 16 Polarization: 110.91 SS G_CDS: -0.34 Total: 110.57 kcal Total: -65.25 0.22 -65.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251071631.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.074 kcal (2) G-P(sol) polarization free energy of solvation -65.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds