Wall clock time and date at job start Tue Mar 31 2020 12:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46894 * 110.99804 * 2 1 4 4 C 1.46901 * 110.99935 * 123.95253 * 2 1 3 5 5 H 1.08994 * 109.47549 * 308.75176 * 4 2 1 6 6 C 1.52999 * 109.46936 * 188.75333 * 4 2 1 7 7 C 1.53000 * 109.47136 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.47303 * 59.99882 * 7 6 4 9 9 C 1.52999 * 109.47121 * 300.00127 * 8 7 6 10 10 C 1.53000 * 109.47136 * 59.99770 * 9 8 7 11 11 H 1.08995 * 109.47025 * 179.97438 * 10 9 8 12 12 N 1.46505 * 109.46648 * 59.99916 * 10 9 8 13 13 S 1.65600 * 120.00071 * 95.00366 * 12 10 9 14 14 O 1.42094 * 104.27910 * 181.06718 * 13 12 10 15 15 O 1.42105 * 104.27455 * 308.92442 * 13 12 10 16 16 C 1.81403 * 104.45205 * 64.99351 * 13 12 10 17 17 C 1.52997 * 109.47370 * 180.02562 * 16 13 12 18 18 C 1.53001 * 109.47190 * 179.97438 * 17 16 13 19 19 C 1.50700 * 109.46823 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00287 * 359.97438 * 19 18 17 21 21 C 1.37882 * 119.99659 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99875 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99877 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47071 * 90.00094 * 23 21 19 25 25 H 1.48502 * 109.46921 * 209.99698 * 23 21 19 26 26 H 1.48497 * 109.47297 * 329.99769 * 23 21 19 27 27 H 1.09000 * 109.47227 * 296.04374 * 1 2 3 28 28 H 1.08999 * 109.47714 * 56.04568 * 1 2 3 29 29 H 1.09006 * 109.47315 * 176.04601 * 1 2 3 30 30 H 1.09000 * 109.47345 * 190.47579 * 3 2 1 31 31 H 1.09001 * 109.47045 * 310.47069 * 3 2 1 32 32 H 1.09001 * 109.47366 * 70.47546 * 3 2 1 33 33 H 1.09000 * 109.47397 * 60.00351 * 6 4 2 34 34 H 1.09005 * 109.47278 * 300.00162 * 6 4 2 35 35 H 1.09003 * 109.47177 * 299.99605 * 7 6 4 36 36 H 1.09004 * 109.47094 * 180.02562 * 7 6 4 37 37 H 1.08996 * 109.46908 * 60.00320 * 8 7 6 38 38 H 1.09000 * 109.46656 * 180.02562 * 8 7 6 39 39 H 1.08997 * 109.46908 * 179.97438 * 9 8 7 40 40 H 1.09003 * 109.46765 * 299.99913 * 9 8 7 41 41 H 0.97001 * 120.00398 * 274.99052 * 12 10 9 42 42 H 1.09001 * 109.46924 * 300.00712 * 16 13 12 43 43 H 1.08997 * 109.46715 * 60.00169 * 16 13 12 44 44 H 1.09005 * 109.46970 * 300.00302 * 17 16 13 45 45 H 1.09005 * 109.46952 * 59.99683 * 17 16 13 46 46 H 1.08992 * 109.47182 * 300.00212 * 18 17 16 47 47 H 1.08998 * 109.46639 * 60.00493 * 18 17 16 48 48 H 0.96996 * 119.99791 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.5251 -0.4194 2.0578 6 6 3.5092 -0.5644 1.2313 7 6 4.0576 -1.3627 2.4158 8 6 3.7524 -2.8484 2.2147 9 6 2.2386 -3.0499 2.1209 10 6 1.6902 -2.2517 0.9365 11 1 0.6119 -2.3956 0.8695 12 7 2.3224 -2.7170 -0.3005 13 16 1.5730 -3.8615 -1.2336 14 8 2.4721 -4.0778 -2.3124 15 8 1.2577 -4.9052 -0.3222 16 6 0.0603 -3.0490 -1.8188 17 6 -0.7294 -4.0168 -2.7023 18 6 -2.0055 -3.3317 -3.1953 19 6 -2.7831 -4.2848 -4.0660 20 1 -2.4047 -5.2795 -4.2497 21 6 -3.9770 -3.8864 -4.6289 22 7 -4.6554 -4.7180 -5.3892 23 14 -4.6304 -2.1652 -4.3129 24 1 -4.1163 -1.2414 -5.3558 25 1 -6.1146 -2.1835 -4.3560 26 1 -4.1796 -1.7024 -2.9758 27 1 -0.3634 0.4512 0.9233 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3634 -1.0253 -0.0709 30 1 3.0690 1.3485 -0.1868 31 1 1.5028 1.9496 -0.7818 32 1 1.8049 1.8337 0.9686 33 1 3.7267 0.4941 1.3743 34 1 3.9796 -0.9110 0.3111 35 1 3.5873 -1.0165 3.3362 36 1 5.1360 -1.2187 2.4828 37 1 4.2227 -3.1945 1.2943 38 1 4.1427 -3.4169 3.0588 39 1 2.0213 -4.1083 1.9772 40 1 1.7684 -2.7037 3.0414 41 1 3.1799 -2.3546 -0.5731 42 1 -0.5497 -2.7578 -0.9637 43 1 0.3240 -2.1626 -2.3957 44 1 -0.1195 -4.3084 -3.5573 45 1 -0.9930 -4.9030 -2.1250 46 1 -2.6152 -3.0405 -2.3401 47 1 -1.7422 -2.4453 -3.7725 48 1 -5.4955 -4.4379 -5.7849 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318493909.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:27 Heat of formation + Delta-G solvation = -87.076839 kcal Electronic energy + Delta-G solvation = -26686.453619 eV Core-core repulsion = 23095.776005 eV Total energy + Delta-G solvation = -3590.677615 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.10110 -36.84601 -36.27013 -35.68120 -34.76425 -33.77848 -32.18910 -30.50013 -29.09380 -28.39161 -27.72809 -24.35063 -23.55181 -22.64299 -21.31808 -20.55009 -20.01225 -18.84910 -17.70260 -16.86233 -16.38663 -16.26241 -15.85891 -15.43181 -15.30129 -14.75136 -14.63633 -14.22709 -14.18780 -13.96715 -13.68566 -12.98949 -12.89729 -12.75362 -12.71075 -12.40795 -12.28807 -12.07058 -11.86257 -11.80014 -11.78195 -11.66675 -11.57496 -11.53623 -11.41984 -10.97082 -10.92269 -10.88879 -10.82234 -10.26429 -10.05589 -9.85930 -9.74019 -9.29484 -9.18635 -8.60418 -8.57147 -6.06824 -4.05702 0.53328 2.90452 3.27351 3.34570 3.36527 3.56865 3.98231 4.23386 4.35438 4.41525 4.52155 4.66839 4.80594 4.88844 4.91095 4.93961 5.06212 5.08996 5.10274 5.15273 5.19200 5.26977 5.27431 5.35091 5.37288 5.45677 5.59704 5.63581 5.70109 5.74881 5.77957 5.87746 5.90766 5.95976 6.10125 6.17241 6.20303 6.33284 6.71296 6.72751 6.76539 7.05733 7.16176 7.30158 7.73374 8.49880 8.98129 9.54481 11.06613 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.016919 B = 0.003879 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.500997 B = 7216.655246 C = 8294.122605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.538 5.538 3 C 0.023 3.977 4 C 0.079 3.921 5 H 0.054 0.946 6 C -0.117 4.117 7 C -0.119 4.119 8 C -0.118 4.118 9 C -0.138 4.138 10 C 0.166 3.834 11 H 0.082 0.918 12 N -1.102 6.102 13 S 2.602 3.398 14 O -0.964 6.964 15 O -0.962 6.962 16 C -0.614 4.614 17 C -0.097 4.097 18 C -0.003 4.003 19 C -0.526 4.526 20 H 0.074 0.926 21 C 0.067 3.933 22 N -0.901 5.901 23 Si 0.880 3.120 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.266 1.266 27 H 0.027 0.973 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.024 0.976 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.415 0.585 42 H 0.122 0.878 43 H 0.133 0.867 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.019 0.981 47 H 0.016 0.984 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.918 12.661 18.007 27.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.261 5.261 3 C -0.125 4.125 4 C -0.031 4.031 5 H 0.071 0.929 6 C -0.155 4.155 7 C -0.157 4.157 8 C -0.156 4.156 9 C -0.178 4.178 10 C 0.057 3.943 11 H 0.100 0.900 12 N -0.860 5.860 13 S 2.697 3.303 14 O -0.955 6.955 15 O -0.952 6.952 16 C -0.746 4.746 17 C -0.136 4.136 18 C -0.042 4.042 19 C -0.564 4.564 20 H 0.092 0.908 21 C -0.134 4.134 22 N -0.540 5.540 23 Si 0.708 3.292 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.191 1.191 27 H 0.045 0.955 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.250 0.750 42 H 0.140 0.860 43 H 0.151 0.849 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.037 0.963 47 H 0.034 0.966 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 17.078 11.470 17.365 26.922 hybrid contribution -0.943 2.155 0.640 2.437 sum 16.135 13.625 18.006 27.752 Atomic orbital electron populations 1.22584 0.87052 1.02890 1.00946 1.61961 1.07908 1.13598 1.42657 1.22431 1.01210 0.88728 1.00145 1.21954 0.95952 0.93203 0.92001 0.92864 1.21690 0.94090 1.00322 0.99389 1.21553 1.00660 0.95507 0.97944 1.21488 0.96105 0.95819 1.02187 1.22075 0.96284 1.01987 0.97454 1.20686 0.96551 0.92541 0.84477 0.90039 1.55548 1.33680 1.62259 1.34530 1.05198 0.76626 0.74563 0.73878 1.93575 1.61768 1.84553 1.55578 1.93571 1.85582 1.53108 1.62956 1.30642 1.19507 1.13276 1.11131 1.21296 0.98477 0.96415 0.97422 1.19509 0.91943 0.96339 0.96360 1.21155 1.05291 1.00872 1.29070 0.90758 1.25028 0.96580 0.97240 0.94592 1.69913 1.15506 1.35672 1.32884 0.86773 0.78004 0.85223 0.79231 1.20243 1.21340 1.19064 0.95463 0.90742 0.91000 0.90991 0.91401 0.95766 0.91477 0.90793 0.92071 0.91745 0.91464 0.91880 0.89592 0.91193 0.74995 0.86002 0.84914 0.91113 0.91161 0.96296 0.96614 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.34 60.06 0.56 0.68 16 2 N -0.54 -4.60 4.71 -243.18 -1.15 -5.75 16 3 C 0.02 0.16 8.62 60.06 0.52 0.68 16 4 C 0.08 0.61 1.73 -67.71 -0.12 0.50 16 5 H 0.05 0.40 8.08 -51.93 -0.42 -0.02 16 6 C -0.12 -0.78 4.34 -26.73 -0.12 -0.90 16 7 C -0.12 -0.75 5.92 -26.73 -0.16 -0.90 16 8 C -0.12 -0.91 5.77 -26.73 -0.15 -1.07 16 9 C -0.14 -1.22 5.64 -26.73 -0.15 -1.37 16 10 C 0.17 1.53 2.20 -67.93 -0.15 1.38 16 11 H 0.08 0.75 5.68 -51.93 -0.29 0.46 16 12 N -1.10 -11.69 4.46 -4.89 -0.02 -11.71 16 13 S 2.60 37.82 5.38 -107.50 -0.58 37.25 16 14 O -0.96 -17.12 18.08 -57.54 -1.04 -18.16 16 15 O -0.96 -16.40 17.11 -57.54 -0.98 -17.38 16 16 C -0.61 -9.05 5.73 37.16 0.21 -8.84 16 17 C -0.10 -1.90 5.16 -26.73 -0.14 -2.04 16 18 C 0.00 -0.07 4.04 -27.88 -0.11 -0.18 16 19 C -0.53 -15.02 9.66 -34.44 -0.33 -15.36 16 20 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 21 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 22 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 23 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 27 H 0.03 0.22 8.13 -51.93 -0.42 -0.20 16 28 H 0.07 0.68 8.05 -51.93 -0.42 0.26 16 29 H 0.07 0.67 4.76 -51.93 -0.25 0.42 16 30 H 0.07 0.47 6.64 -51.93 -0.34 0.12 16 31 H 0.07 0.49 8.01 -51.93 -0.42 0.07 16 32 H 0.02 0.16 8.12 -51.93 -0.42 -0.26 16 33 H 0.07 0.40 6.46 -51.93 -0.34 0.06 16 34 H 0.07 0.53 6.50 -51.93 -0.34 0.19 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.57 7.45 -51.93 -0.39 0.18 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.93 7.42 -51.93 -0.39 0.54 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.41 3.90 6.78 -34.47 -0.23 3.66 16 42 H 0.12 1.54 5.92 -51.92 -0.31 1.23 16 43 H 0.13 1.77 8.14 -51.93 -0.42 1.35 16 44 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 46 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 47 H 0.02 0.36 7.57 -51.93 -0.39 -0.04 16 48 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 371.60 15.07 5.60 5.60 Total: -1.00 -34.77 371.60 -10.58 -45.36 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -8.28 Total: 0.65 kcal Atomic # 6 Polarization: -25.32 SS G_CDS: -0.24 Total: -25.56 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: -0.39 Total: -44.52 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -2.02 Total: -35.54 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Atomic # 16 Polarization: 37.82 SS G_CDS: -0.58 Total: 37.25 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.77 -10.58 -45.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318493909.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.719 kcal (2) G-P(sol) polarization free energy of solvation -34.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds