Wall clock time and date at job start Tue Mar 31 2020 12:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46894 * 110.99804 * 2 1 4 4 C 1.46901 * 110.99935 * 123.95253 * 2 1 3 5 5 H 1.08994 * 109.47549 * 308.75176 * 4 2 1 6 6 C 1.52999 * 109.46936 * 188.75333 * 4 2 1 7 7 C 1.53000 * 109.47136 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.47303 * 59.99882 * 7 6 4 9 9 C 1.52999 * 109.47121 * 300.00127 * 8 7 6 10 10 C 1.53000 * 109.47136 * 59.99770 * 9 8 7 11 11 H 1.08995 * 109.47025 * 179.97438 * 10 9 8 12 12 N 1.46505 * 109.46648 * 59.99916 * 10 9 8 13 13 S 1.65600 * 120.00071 * 95.00366 * 12 10 9 14 14 O 1.42094 * 104.27910 * 181.06718 * 13 12 10 15 15 O 1.42105 * 104.27455 * 308.92442 * 13 12 10 16 16 C 1.81403 * 104.45205 * 64.99351 * 13 12 10 17 17 C 1.52997 * 109.47370 * 180.02562 * 16 13 12 18 18 C 1.53001 * 109.47190 * 179.97438 * 17 16 13 19 19 C 1.50700 * 109.46823 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00287 * 359.97438 * 19 18 17 21 21 C 1.37882 * 119.99659 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99875 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99877 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47071 * 90.00094 * 23 21 19 25 25 H 1.48502 * 109.46921 * 209.99698 * 23 21 19 26 26 H 1.48497 * 109.47297 * 329.99769 * 23 21 19 27 27 H 1.09000 * 109.47227 * 296.04374 * 1 2 3 28 28 H 1.08999 * 109.47714 * 56.04568 * 1 2 3 29 29 H 1.09006 * 109.47315 * 176.04601 * 1 2 3 30 30 H 1.09000 * 109.47345 * 190.47579 * 3 2 1 31 31 H 1.09001 * 109.47045 * 310.47069 * 3 2 1 32 32 H 1.09001 * 109.47366 * 70.47546 * 3 2 1 33 33 H 1.09000 * 109.47397 * 60.00351 * 6 4 2 34 34 H 1.09005 * 109.47278 * 300.00162 * 6 4 2 35 35 H 1.09003 * 109.47177 * 299.99605 * 7 6 4 36 36 H 1.09004 * 109.47094 * 180.02562 * 7 6 4 37 37 H 1.08996 * 109.46908 * 60.00320 * 8 7 6 38 38 H 1.09000 * 109.46656 * 180.02562 * 8 7 6 39 39 H 1.08997 * 109.46908 * 179.97438 * 9 8 7 40 40 H 1.09003 * 109.46765 * 299.99913 * 9 8 7 41 41 H 0.97001 * 120.00398 * 274.99052 * 12 10 9 42 42 H 1.09001 * 109.46924 * 300.00712 * 16 13 12 43 43 H 1.08997 * 109.46715 * 60.00169 * 16 13 12 44 44 H 1.09005 * 109.46970 * 300.00302 * 17 16 13 45 45 H 1.09005 * 109.46952 * 59.99683 * 17 16 13 46 46 H 1.08992 * 109.47182 * 300.00212 * 18 17 16 47 47 H 1.08998 * 109.46639 * 60.00493 * 18 17 16 48 48 H 0.96996 * 119.99791 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.5251 -0.4194 2.0578 6 6 3.5092 -0.5644 1.2313 7 6 4.0576 -1.3627 2.4158 8 6 3.7524 -2.8484 2.2147 9 6 2.2386 -3.0499 2.1209 10 6 1.6902 -2.2517 0.9365 11 1 0.6119 -2.3956 0.8695 12 7 2.3224 -2.7170 -0.3005 13 16 1.5730 -3.8615 -1.2336 14 8 2.4721 -4.0778 -2.3124 15 8 1.2577 -4.9052 -0.3222 16 6 0.0603 -3.0490 -1.8188 17 6 -0.7294 -4.0168 -2.7023 18 6 -2.0055 -3.3317 -3.1953 19 6 -2.7831 -4.2848 -4.0660 20 1 -2.4047 -5.2795 -4.2497 21 6 -3.9770 -3.8864 -4.6289 22 7 -4.6554 -4.7180 -5.3892 23 14 -4.6304 -2.1652 -4.3129 24 1 -4.1163 -1.2414 -5.3558 25 1 -6.1146 -2.1835 -4.3560 26 1 -4.1796 -1.7024 -2.9758 27 1 -0.3634 0.4512 0.9233 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3634 -1.0253 -0.0709 30 1 3.0690 1.3485 -0.1868 31 1 1.5028 1.9496 -0.7818 32 1 1.8049 1.8337 0.9686 33 1 3.7267 0.4941 1.3743 34 1 3.9796 -0.9110 0.3111 35 1 3.5873 -1.0165 3.3362 36 1 5.1360 -1.2187 2.4828 37 1 4.2227 -3.1945 1.2943 38 1 4.1427 -3.4169 3.0588 39 1 2.0213 -4.1083 1.9772 40 1 1.7684 -2.7037 3.0414 41 1 3.1799 -2.3546 -0.5731 42 1 -0.5497 -2.7578 -0.9637 43 1 0.3240 -2.1626 -2.3957 44 1 -0.1195 -4.3084 -3.5573 45 1 -0.9930 -4.9030 -2.1250 46 1 -2.6152 -3.0405 -2.3401 47 1 -1.7422 -2.4453 -3.7725 48 1 -5.4955 -4.4379 -5.7849 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318493909.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:27 Heat of formation + Delta-G solvation = -113.486705 kcal Electronic energy + Delta-G solvation = -26687.598837 eV Core-core repulsion = 23095.776005 eV Total energy + Delta-G solvation = -3591.822833 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.73751 -38.12597 -37.03731 -36.86291 -36.47593 -34.53596 -34.23651 -31.12331 -30.16087 -29.77133 -28.34332 -25.39434 -24.91392 -23.26213 -22.26973 -21.91031 -20.88501 -19.82850 -18.94280 -18.75394 -17.38596 -17.15162 -16.94559 -16.47390 -16.20974 -15.99658 -15.67437 -15.36792 -15.21121 -14.85460 -14.58399 -14.33020 -14.06949 -13.76768 -13.65990 -13.37286 -13.29330 -13.21007 -13.12926 -13.08046 -12.94907 -12.69293 -12.63471 -12.49759 -12.28527 -12.21546 -12.11025 -11.83659 -11.65412 -11.60538 -11.40014 -11.38929 -11.18244 -10.85215 -10.76978 -10.21468 -9.18700 -8.29328 -6.35152 -0.66269 1.36909 1.39539 1.51224 1.85323 2.36905 2.80259 2.97779 3.05873 3.27053 3.62062 3.72763 3.85725 3.90849 4.09513 4.23070 4.27346 4.31485 4.32903 4.37166 4.50999 4.53130 4.57776 4.62286 4.64887 4.75453 4.80060 4.86665 4.87646 4.97458 5.03833 5.12179 5.14453 5.18952 5.22874 5.30003 5.35316 5.36685 5.45725 5.47425 5.58691 5.63315 6.13375 6.18196 6.25776 6.26475 6.73048 7.29383 8.87810 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.016919 B = 0.003879 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.500997 B = 7216.655246 C = 8294.122605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.549 5.549 3 C 0.023 3.977 4 C 0.084 3.916 5 H 0.064 0.936 6 C -0.116 4.116 7 C -0.113 4.113 8 C -0.120 4.120 9 C -0.139 4.139 10 C 0.157 3.843 11 H 0.084 0.916 12 N -1.086 6.086 13 S 2.621 3.379 14 O -0.999 6.999 15 O -0.990 6.990 16 C -0.607 4.607 17 C -0.101 4.101 18 C -0.002 4.002 19 C -0.544 4.544 20 H 0.028 0.972 21 C 0.000 4.000 22 N -0.953 5.953 23 Si 0.955 3.045 24 H -0.266 1.266 25 H -0.286 1.286 26 H -0.236 1.236 27 H 0.035 0.965 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.031 0.969 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.087 0.913 41 H 0.422 0.578 42 H 0.148 0.852 43 H 0.153 0.847 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.033 0.967 47 H 0.029 0.971 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.603 16.059 20.102 31.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.273 5.273 3 C -0.124 4.124 4 C -0.026 4.026 5 H 0.082 0.918 6 C -0.153 4.153 7 C -0.151 4.151 8 C -0.158 4.158 9 C -0.179 4.179 10 C 0.049 3.951 11 H 0.102 0.898 12 N -0.847 5.847 13 S 2.716 3.284 14 O -0.989 6.989 15 O -0.980 6.980 16 C -0.738 4.738 17 C -0.141 4.141 18 C -0.040 4.040 19 C -0.582 4.582 20 H 0.047 0.953 21 C -0.196 4.196 22 N -0.594 5.594 23 Si 0.778 3.222 24 H -0.191 1.191 25 H -0.211 1.211 26 H -0.159 1.159 27 H 0.054 0.946 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.050 0.950 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.106 0.894 41 H 0.260 0.740 42 H 0.166 0.834 43 H 0.171 0.829 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.051 0.949 47 H 0.048 0.952 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 17.794 14.863 19.471 30.276 hybrid contribution -1.120 1.007 -0.004 1.507 sum 16.673 15.870 19.467 30.147 Atomic orbital electron populations 1.22606 0.87422 1.02558 1.01311 1.61955 1.07759 1.14507 1.43074 1.22451 1.01517 0.87962 1.00520 1.21916 0.96737 0.91698 0.92236 0.91801 1.21698 0.93198 1.01149 0.99303 1.21512 1.01323 0.94064 0.98152 1.21505 0.95177 0.97208 1.01883 1.22068 0.97310 1.00459 0.98048 1.20941 0.96633 0.93890 0.83598 0.89848 1.55157 1.33617 1.61569 1.34392 1.04401 0.76173 0.74630 0.73212 1.93525 1.62834 1.85410 1.57174 1.93539 1.85971 1.54916 1.63530 1.30546 1.19273 1.12589 1.11408 1.21159 0.97671 0.97236 0.97985 1.19469 0.92932 0.95665 0.95946 1.21570 1.06215 1.00261 1.30137 0.95316 1.26120 0.96815 1.02564 0.94107 1.70088 1.16272 1.38505 1.34494 0.85588 0.77159 0.78755 0.80735 1.19058 1.21145 1.15944 0.94643 0.91027 0.91523 0.90340 0.91577 0.95023 0.90216 0.91354 0.91123 0.90872 0.92598 0.91402 0.92042 0.89409 0.73983 0.83403 0.82889 0.92251 0.92006 0.94874 0.95223 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.34 127.69 1.19 1.33 16 2 N -0.55 -7.71 4.71 -923.30 -4.35 -12.06 16 3 C 0.02 0.26 8.62 127.69 1.10 1.36 16 4 C 0.08 1.05 1.73 44.92 0.08 1.13 16 5 H 0.06 0.71 8.08 -2.39 -0.02 0.69 16 6 C -0.12 -1.19 4.34 30.59 0.13 -1.06 16 7 C -0.11 -1.08 5.92 30.59 0.18 -0.90 16 8 C -0.12 -1.63 5.77 30.59 0.18 -1.45 16 9 C -0.14 -2.22 5.64 30.59 0.17 -2.05 16 10 C 0.16 2.56 2.20 44.99 0.10 2.66 16 11 H 0.08 1.34 5.68 -2.39 -0.01 1.32 16 12 N -1.09 -21.37 4.46 -169.38 -0.76 -22.13 16 13 S 2.62 74.60 5.38 -56.49 -0.30 74.30 16 14 O -1.00 -35.45 18.08 -127.65 -2.31 -37.75 16 15 O -0.99 -33.76 17.11 -127.65 -2.18 -35.95 16 16 C -0.61 -16.80 5.73 71.98 0.41 -16.39 16 17 C -0.10 -3.96 5.16 30.59 0.16 -3.81 16 18 C 0.00 -0.07 4.04 29.85 0.12 0.05 16 19 C -0.54 -31.81 9.66 25.60 0.25 -31.56 16 20 H 0.03 1.86 7.99 -2.91 -0.02 1.84 16 21 C 0.00 0.03 5.47 84.66 0.46 0.49 16 22 N -0.95 -60.55 13.96 21.45 0.30 -60.25 16 23 Si 0.96 43.28 27.47 68.60 1.88 45.17 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 25 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 26 H -0.24 -9.52 6.54 99.48 0.65 -8.87 16 27 H 0.04 0.46 8.13 -2.39 -0.02 0.44 16 28 H 0.07 1.10 8.05 -2.39 -0.02 1.08 16 29 H 0.07 1.03 4.76 -2.38 -0.01 1.02 16 30 H 0.08 0.77 6.64 -2.39 -0.02 0.75 16 31 H 0.07 0.77 8.01 -2.39 -0.02 0.75 16 32 H 0.03 0.31 8.12 -2.39 -0.02 0.29 16 33 H 0.08 0.66 6.46 -2.39 -0.02 0.64 16 34 H 0.07 0.80 6.50 -2.38 -0.02 0.78 16 35 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 37 H 0.06 0.88 7.45 -2.39 -0.02 0.86 16 38 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.06 1.30 7.42 -2.39 -0.02 1.28 16 40 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.42 7.26 6.78 -96.75 -0.66 6.61 16 42 H 0.15 3.32 5.92 -2.39 -0.01 3.30 16 43 H 0.15 3.65 8.14 -2.39 -0.02 3.63 16 44 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 45 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 46 H 0.03 1.42 7.20 -2.39 -0.02 1.40 16 47 H 0.03 1.27 7.57 -2.39 -0.02 1.25 16 48 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -76.91 371.60 -2.96 -79.87 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.23 Total: 19.00 kcal Atomic # 6 Polarization: -54.73 SS G_CDS: 4.53 Total: -50.19 kcal Atomic # 7 Polarization: -89.64 SS G_CDS: -4.81 Total: -94.45 kcal Atomic # 8 Polarization: -69.21 SS G_CDS: -4.49 Total: -73.70 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.88 Total: 45.17 kcal Atomic # 16 Polarization: 74.60 SS G_CDS: -0.30 Total: 74.30 kcal Total: -76.91 -2.96 -79.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318493909.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.619 kcal (2) G-P(sol) polarization free energy of solvation -76.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds