Wall clock time and date at job start Tue Mar 31 2020 12:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46931 * 2 1 4 4 N 1.46504 * 109.46915 * 179.97438 * 3 2 1 5 5 N 1.39934 * 125.75022 * 90.02934 * 4 3 2 6 6 C 1.30451 * 108.89263 * 179.97438 * 5 4 3 7 7 C 1.41293 * 108.02654 * 359.97438 * 6 5 4 8 8 C 1.47428 * 126.41733 * 179.97438 * 7 6 5 9 9 O 1.21597 * 119.99996 * 180.02562 * 8 7 6 10 10 N 1.34773 * 119.99683 * 0.02700 * 8 7 6 11 11 C 1.46501 * 119.99966 * 179.97438 * 10 8 7 12 12 H 1.09003 * 115.51589 * 9.42053 * 11 10 8 13 13 C 1.52999 * 117.44494 * 224.00166 * 11 10 8 14 14 H 1.08997 * 119.54132 * 4.15953 * 13 11 10 15 15 C 1.54353 * 118.14677 * 160.72194 * 13 11 10 16 16 N 1.48143 * 104.55720 * 87.29088 * 15 13 11 17 17 C 1.36935 * 127.83515 * 140.42206 * 16 15 13 18 18 H 1.08004 * 119.99736 * 195.56986 * 17 16 15 19 19 C 1.38805 * 120.00242 * 15.56589 * 17 16 15 20 20 N 1.31622 * 120.00105 * 9.10610 * 19 17 16 21 21 Si 1.86806 * 120.00361 * 189.10116 * 19 17 16 22 22 H 1.48503 * 109.46728 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47207 * 119.99790 * 21 19 17 24 24 H 1.48500 * 109.47356 * 240.00625 * 21 19 17 25 25 C 1.48144 * 104.32503 * 320.41733 * 16 15 13 26 26 C 1.53003 * 117.44390 * 154.83104 * 11 10 8 27 27 H 1.09002 * 119.54193 * 354.24062 * 26 11 10 28 28 C 1.34259 * 125.75702 * 270.26857 * 4 3 2 29 29 C 1.50707 * 126.28977 * 0.03761 * 28 4 3 30 30 H 1.09004 * 109.47469 * 299.99891 * 1 2 3 31 31 H 1.09001 * 109.47023 * 60.00136 * 1 2 3 32 32 H 1.09001 * 109.46826 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47567 * 239.99821 * 2 1 3 34 34 H 1.09001 * 109.47023 * 119.99864 * 2 1 3 35 35 H 1.09002 * 109.47236 * 60.00254 * 3 2 1 36 36 H 1.09001 * 109.47156 * 299.99783 * 3 2 1 37 37 H 1.08002 * 125.98286 * 180.02562 * 6 5 4 38 38 H 0.97000 * 120.00195 * 359.97438 * 10 8 7 39 39 H 1.08994 * 110.43003 * 328.52477 * 15 13 11 40 40 H 1.08999 * 110.43697 * 206.05944 * 15 13 11 41 41 H 0.97004 * 119.99995 * 180.02562 * 20 19 17 42 42 H 1.09001 * 110.40845 * 280.80348 * 25 16 15 43 43 H 1.09001 * 110.40755 * 158.37344 * 25 16 15 44 44 H 1.09000 * 109.47248 * 270.19991 * 29 28 4 45 45 H 1.08999 * 109.46879 * 30.20194 * 29 28 4 46 46 H 1.09001 * 109.47139 * 150.19896 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 7 4.3230 1.4430 -1.1347 6 6 5.5713 1.4434 -0.7559 7 6 5.5995 1.4438 0.6568 8 6 6.8032 1.4439 1.5081 9 8 6.6914 1.4438 2.7189 10 7 8.0273 1.4440 0.9443 11 6 9.2234 1.4445 1.7902 12 1 9.0464 1.2839 2.8537 13 6 10.3629 2.3879 1.3997 14 1 10.2312 3.0712 0.5607 15 6 11.4098 2.7493 2.4747 16 7 12.4244 1.6738 2.3829 17 6 13.7852 1.7923 2.4793 18 1 14.4223 0.9851 2.1491 19 6 14.3458 2.9498 3.0013 20 7 13.5772 3.8562 3.5670 21 14 16.1913 3.2213 2.9011 22 1 16.8259 2.0628 2.2226 23 1 16.4684 4.4591 2.1289 24 1 16.7468 3.3580 4.2715 25 6 11.6328 0.4410 2.1631 26 6 10.5089 0.8672 1.1943 27 1 10.4807 0.3929 0.2132 28 6 4.2891 1.4376 1.0905 29 6 3.8239 1.4303 2.5239 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 6.4323 1.4441 -1.4079 38 1 8.1164 1.4436 -0.0216 39 1 10.9523 2.7569 3.4640 40 1 11.8610 3.7172 2.2563 41 1 13.9689 4.6653 3.9315 42 1 11.2102 0.0880 3.1038 43 1 12.2524 -0.3328 1.7097 44 1 3.7078 2.4562 2.8735 45 1 2.8673 0.9125 2.5928 46 1 4.5603 0.9169 3.1422 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962136102.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:19 Heat of formation + Delta-G solvation = 90.395706 kcal Electronic energy + Delta-G solvation = -25863.693768 eV Core-core repulsion = 22177.560740 eV Total energy + Delta-G solvation = -3686.133028 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.70340 -39.45025 -38.05691 -35.88737 -34.41786 -32.86675 -32.44335 -31.51794 -30.18000 -27.64715 -27.09878 -26.77621 -25.53936 -23.08509 -22.55161 -21.58630 -20.40686 -20.32422 -19.53490 -19.22253 -17.62181 -16.83975 -16.28108 -15.96557 -15.82740 -15.48762 -14.70839 -14.61482 -14.39369 -14.17586 -13.73171 -13.54693 -13.33528 -13.16144 -12.99969 -12.78297 -12.70128 -12.60272 -12.32412 -12.14379 -11.91692 -11.50883 -11.43026 -11.39528 -11.02598 -10.94237 -10.82440 -10.34579 -10.11742 -10.11641 -9.72459 -9.68256 -9.63854 -9.12840 -8.84918 -8.69340 -8.19128 -6.83106 -5.76495 -3.10771 1.33896 2.01059 2.03346 3.30791 3.40596 3.45953 3.47207 3.48556 4.05694 4.22978 4.32992 4.40638 4.47675 4.50567 4.61833 4.69049 4.88867 4.90048 5.06625 5.11313 5.22700 5.26459 5.31423 5.42093 5.42826 5.46770 5.48534 5.58777 5.62921 5.70685 5.85612 5.89042 5.95528 6.18696 6.24187 6.35202 6.57868 6.61030 6.73175 6.92277 6.93989 7.32398 7.41391 7.58241 7.74130 7.75799 8.24114 8.45441 9.14142 9.76920 10.54228 11.37820 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.042190 B = 0.002090 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.498912 B =13393.298111 C =13544.014271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.128 3.872 4 N -0.362 5.362 5 N -0.299 5.299 6 C 0.083 3.917 7 C -0.294 4.294 8 C 0.597 3.403 9 O -0.546 6.546 10 N -0.694 5.694 11 C 0.101 3.899 12 H 0.132 0.868 13 C -0.179 4.179 14 H 0.101 0.899 15 C 0.185 3.815 16 N -0.594 5.594 17 C -0.226 4.226 18 H 0.077 0.923 19 C -0.006 4.006 20 N -0.914 5.914 21 Si 0.912 3.088 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.156 3.844 26 C -0.184 4.184 27 H 0.103 0.897 28 C 0.159 3.841 29 C -0.101 4.101 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.189 0.811 38 H 0.396 0.604 39 H 0.026 0.974 40 H 0.090 0.910 41 H 0.254 0.746 42 H 0.027 0.973 43 H 0.051 0.949 44 H 0.087 0.913 45 H 0.069 0.931 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.155 -5.874 -8.398 28.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 C 0.007 3.993 4 N -0.142 5.142 5 N -0.118 5.118 6 C -0.105 4.105 7 C -0.309 4.309 8 C 0.385 3.615 9 O -0.425 6.425 10 N -0.342 5.342 11 C -0.005 4.005 12 H 0.149 0.851 13 C -0.201 4.201 14 H 0.119 0.881 15 C 0.059 3.941 16 N -0.317 5.317 17 C -0.354 4.354 18 H 0.095 0.905 19 C -0.204 4.204 20 N -0.561 5.561 21 Si 0.743 3.257 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.029 3.971 26 C -0.206 4.206 27 H 0.121 0.879 28 C 0.026 3.974 29 C -0.159 4.159 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.206 0.794 38 H 0.230 0.770 39 H 0.044 0.956 40 H 0.108 0.892 41 H 0.064 0.936 42 H 0.045 0.955 43 H 0.070 0.930 44 H 0.105 0.895 45 H 0.087 0.913 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -26.961 -5.714 -8.459 28.829 hybrid contribution 1.540 0.237 -0.193 1.570 sum -25.421 -5.477 -8.651 27.405 Atomic orbital electron populations 1.21698 0.94048 1.02680 1.02311 1.21952 0.96890 0.95568 1.03671 1.21893 0.73759 0.98803 1.04857 1.48520 1.06625 1.55644 1.03362 1.77161 1.01822 1.25213 1.07571 1.24025 0.95371 0.97183 0.93891 1.20020 0.92951 1.24440 0.93478 1.17115 0.81915 0.75482 0.86942 1.90730 1.86541 1.51121 1.14110 1.45109 1.04718 1.74781 1.09553 1.21798 0.79424 1.03797 0.95516 0.85060 1.24698 0.98929 0.92609 1.03848 0.88086 1.21043 0.85946 0.94777 0.92303 1.45190 1.01718 1.00758 1.84042 1.19033 0.79692 1.02131 1.34539 0.90498 1.24906 0.98080 0.98213 0.99159 1.69916 1.33622 1.10450 1.42066 0.86045 0.84687 0.77729 0.77274 1.20377 1.21665 1.21702 1.21122 0.90484 0.90811 0.94698 1.24267 0.96466 0.98394 1.01441 0.87895 1.21524 0.90054 0.94663 0.91111 1.20717 1.02492 1.04250 0.88449 0.92204 0.92182 0.91813 0.90777 0.91144 0.88597 0.88295 0.79439 0.76996 0.95567 0.89151 0.93600 0.95531 0.93029 0.89465 0.91262 0.87259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.53 9.91 37.16 0.37 -0.16 16 2 C -0.14 -0.76 6.26 -26.73 -0.17 -0.93 16 3 C 0.13 0.78 6.03 -4.04 -0.02 0.76 16 4 N -0.36 -3.59 3.58 -56.60 -0.20 -3.79 16 5 N -0.30 -3.45 12.50 30.86 0.39 -3.06 16 6 C 0.08 0.91 11.50 -16.98 -0.20 0.71 16 7 C -0.29 -3.71 6.13 -105.07 -0.64 -4.35 16 8 C 0.60 9.01 7.81 -12.52 -0.10 8.91 16 9 O -0.55 -9.88 14.40 5.28 0.08 -9.80 16 10 N -0.69 -9.79 5.55 -54.88 -0.30 -10.10 16 11 C 0.10 1.73 5.98 -67.93 -0.41 1.33 16 12 H 0.13 2.55 7.40 -51.93 -0.38 2.17 16 13 C -0.18 -3.47 7.04 -89.31 -0.63 -4.10 16 14 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 15 C 0.19 4.54 5.70 -2.43 -0.01 4.53 16 16 N -0.59 -15.37 3.38 -168.89 -0.57 -15.94 16 17 C -0.23 -6.33 10.35 -15.06 -0.16 -6.48 16 18 H 0.08 2.08 7.85 -52.48 -0.41 1.67 16 19 C -0.01 -0.18 5.40 -17.43 -0.09 -0.28 16 20 N -0.91 -27.06 10.86 55.49 0.60 -26.45 16 21 Si 0.91 22.06 29.56 -169.99 -5.03 17.03 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 C 0.16 3.30 7.04 -2.41 -0.02 3.29 16 26 C -0.18 -3.29 7.05 -89.29 -0.63 -3.92 16 27 H 0.10 1.61 8.14 -51.93 -0.42 1.18 16 28 C 0.16 1.76 7.01 -81.60 -0.57 1.18 16 29 C -0.10 -0.90 9.34 36.01 0.34 -0.57 16 30 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 31 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.10 0.40 7.64 -51.93 -0.40 0.00 16 36 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.19 1.45 7.50 -52.49 -0.39 1.06 16 38 H 0.40 4.42 7.78 -40.82 -0.32 4.10 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.09 2.46 6.51 -51.93 -0.34 2.12 16 41 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.07 0.42 7.71 -51.93 -0.40 0.02 16 46 H 0.11 1.21 6.50 -51.93 -0.34 0.87 16 LS Contribution 378.63 15.07 5.71 5.71 Total: -1.00 -34.13 378.63 -9.46 -43.59 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -7.19 Total: 2.91 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -2.94 Total: -0.08 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: -0.09 Total: -59.35 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.08 Total: -9.80 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.13 -9.46 -43.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962136102.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.984 kcal (2) G-P(sol) polarization free energy of solvation -34.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds