Wall clock time and date at job start Tue Mar 31 2020 12:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46517 * 2 1 4 4 C 1.52990 * 109.47215 * 239.99848 * 2 1 3 5 5 N 1.46501 * 109.47100 * 184.99864 * 4 2 1 6 6 C 1.46503 * 120.00008 * 89.99869 * 5 4 2 7 7 C 1.36930 * 120.00222 * 269.99763 * 5 4 2 8 8 H 1.08006 * 119.99702 * 22.07602 * 7 5 4 9 9 C 1.38814 * 120.00514 * 202.07490 * 7 5 4 10 10 N 1.31619 * 119.99586 * 13.95465 * 9 7 5 11 11 Si 1.86799 * 120.00045 * 193.95530 * 9 7 5 12 12 H 1.48499 * 109.47594 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47070 * 120.00147 * 11 9 7 14 14 H 1.48504 * 109.46912 * 240.00045 * 11 9 7 15 15 N 1.46502 * 109.47082 * 119.99771 * 2 1 3 16 16 C 1.34783 * 119.99645 * 275.00006 * 15 2 1 17 17 O 1.21283 * 120.00343 * 0.02562 * 16 15 2 18 18 C 1.50707 * 119.99442 * 179.97438 * 16 15 2 19 19 H 1.08995 * 109.63163 * 59.60439 * 18 16 15 20 20 C 1.53316 * 109.62981 * 180.02562 * 18 16 15 21 21 C 1.52811 * 108.51062 * 189.69588 * 20 18 16 22 22 C 1.50445 * 110.44628 * 308.95971 * 21 20 18 23 23 N 1.32890 * 118.52757 * 197.47201 * 22 21 20 24 24 C 1.31595 * 121.06296 * 180.27043 * 23 22 21 25 25 N 1.31817 * 121.66765 * 0.38756 * 24 23 22 26 26 C 1.32189 * 120.64395 * 359.32291 * 25 24 23 27 27 C 1.37770 * 122.58182 * 17.69683 * 22 21 20 28 28 C 1.50335 * 122.80237 * 359.41520 * 27 22 21 29 29 H 1.08999 * 109.46975 * 299.99717 * 1 2 3 30 30 H 1.08996 * 109.47008 * 60.00336 * 1 2 3 31 31 H 1.09006 * 109.46482 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47505 * 304.99593 * 4 2 1 33 33 H 1.08999 * 109.47422 * 65.00014 * 4 2 1 34 34 H 1.09003 * 109.47216 * 95.30493 * 6 5 4 35 35 H 1.08994 * 109.46957 * 215.30247 * 6 5 4 36 36 H 1.08996 * 109.47085 * 335.30916 * 6 5 4 37 37 H 0.97006 * 119.99653 * 180.02562 * 10 9 7 38 38 H 0.96992 * 120.00290 * 95.00135 * 15 2 1 39 39 H 1.09004 * 109.62728 * 69.99340 * 20 18 16 40 40 H 1.09002 * 109.63193 * 309.40671 * 20 18 16 41 41 H 1.09000 * 109.31082 * 188.65744 * 21 20 18 42 42 H 1.09002 * 109.30384 * 69.25581 * 21 20 18 43 43 H 1.08008 * 119.16673 * 180.10086 * 24 23 22 44 44 H 1.08001 * 120.36451 * 180.24099 * 26 25 24 45 45 H 1.08999 * 109.30733 * 257.21996 * 28 27 22 46 46 H 1.08998 * 109.30856 * 137.82111 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 7 3.5001 -0.8263 -1.1904 6 6 4.1259 -1.9918 -0.5610 7 6 4.2799 0.1648 -1.7239 8 1 3.8745 1.1566 -1.8600 9 6 5.5915 -0.1050 -2.0899 10 7 6.0047 -1.3510 -2.1863 11 14 6.7699 1.3001 -2.4454 12 1 6.0645 2.5947 -2.2679 13 1 7.9203 1.2302 -1.5091 14 1 7.2615 1.1923 -3.8426 15 7 2.0184 -0.6906 1.1962 16 6 2.1471 -0.0181 2.3572 17 8 1.8582 1.1586 2.4117 18 6 2.6489 -0.7287 3.5878 19 1 3.6452 -1.1284 3.3992 20 6 2.7014 0.2533 4.7641 21 6 3.4348 -0.4184 5.9244 22 6 2.8454 -1.7740 6.2043 23 7 3.1045 -2.3495 7.3738 24 6 2.6192 -3.5365 7.6687 25 7 1.8655 -4.2065 6.8198 26 6 1.5611 -3.6944 5.6397 27 6 2.0537 -2.4409 5.2952 28 6 1.6986 -1.8692 3.9509 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0278 0.0005 32 1 1.6055 -1.7199 -1.2950 33 1 1.7517 -0.1584 -2.1369 34 1 4.3683 -2.7309 -1.3247 35 1 5.0387 -1.6832 -0.0515 36 1 3.4364 -2.4287 0.1613 37 1 6.9213 -1.5395 -2.4417 38 1 2.2491 -1.6317 1.1527 39 1 1.6879 0.5109 5.0716 40 1 3.2367 1.1546 4.4652 41 1 3.3467 0.2038 6.8150 42 1 4.4886 -0.5293 5.6687 43 1 2.8478 -3.9750 8.6290 44 1 0.9400 -4.2456 4.9492 45 1 0.6764 -1.4917 3.9784 46 1 1.7702 -2.6521 3.1959 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754313147.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:30 Heat of formation + Delta-G solvation = 20.592005 kcal Electronic energy + Delta-G solvation = -27219.774531 eV Core-core repulsion = 23530.614588 eV Total energy + Delta-G solvation = -3689.159944 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.58944 -39.73344 -37.15485 -36.18389 -34.31877 -34.10843 -31.72469 -31.50928 -30.67316 -29.72168 -26.25708 -25.70738 -25.49293 -24.45741 -23.23456 -22.19367 -21.07471 -20.21654 -19.57461 -17.99300 -17.19009 -16.87371 -16.75115 -15.72409 -15.37923 -15.18639 -14.99295 -14.41629 -14.10619 -14.05541 -13.92508 -13.62708 -13.57767 -13.33898 -13.26793 -12.83611 -12.45421 -12.12327 -11.99937 -11.97418 -11.48180 -11.39102 -11.26355 -11.10914 -11.01339 -10.87434 -10.66873 -10.66337 -10.57901 -10.24107 -10.01882 -9.90493 -9.46526 -9.43728 -9.35907 -8.70137 -8.49168 -6.79875 -5.77110 -3.22802 0.66417 0.81223 2.95627 3.35815 3.44032 3.46449 3.49906 3.52931 3.77786 3.96365 4.20499 4.35082 4.41974 4.47330 4.66824 4.84502 5.04195 5.08633 5.21799 5.23736 5.31245 5.33835 5.39508 5.41857 5.57446 5.59276 5.66081 5.74666 5.84161 5.90237 5.98344 6.04329 6.09471 6.14012 6.22085 6.39964 6.49030 6.54100 6.74825 6.75638 7.02867 7.24902 7.62155 7.77515 7.85169 7.93706 8.33638 8.61575 9.18423 9.81249 10.28545 11.27569 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.014901 B = 0.003390 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.598645 B = 8257.740914 C = 8724.210295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.116 3.884 3 H 0.084 0.916 4 C 0.143 3.857 5 N -0.598 5.598 6 C 0.168 3.832 7 C -0.253 4.253 8 H 0.068 0.932 9 C 0.003 3.997 10 N -0.908 5.908 11 Si 0.902 3.098 12 H -0.278 1.278 13 H -0.290 1.290 14 H -0.290 1.290 15 N -0.702 5.702 16 C 0.520 3.480 17 O -0.547 6.547 18 C -0.111 4.111 19 H 0.102 0.898 20 C -0.097 4.097 21 C -0.075 4.075 22 C 0.183 3.817 23 N -0.522 5.522 24 C 0.287 3.713 25 N -0.524 5.524 26 C 0.151 3.849 27 C -0.176 4.176 28 C -0.062 4.062 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.040 0.960 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.040 0.960 36 H -0.009 1.009 37 H 0.251 0.749 38 H 0.396 0.604 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.194 0.806 44 H 0.169 0.831 45 H 0.088 0.912 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.914 -4.156 15.006 18.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.008 3.992 3 H 0.102 0.898 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.023 3.977 7 C -0.382 4.382 8 H 0.086 0.914 9 C -0.196 4.196 10 N -0.553 5.553 11 Si 0.732 3.268 12 H -0.203 1.203 13 H -0.217 1.217 14 H -0.218 1.218 15 N -0.352 5.352 16 C 0.305 3.695 17 O -0.425 6.425 18 C -0.132 4.132 19 H 0.121 0.879 20 C -0.135 4.135 21 C -0.113 4.113 22 C 0.039 3.961 23 N -0.236 5.236 24 C -0.001 4.001 25 N -0.237 5.237 26 C -0.016 4.016 27 C -0.180 4.180 28 C -0.101 4.101 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.010 0.990 37 H 0.062 0.938 38 H 0.232 0.768 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.211 0.789 44 H 0.186 0.814 45 H 0.106 0.894 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.706 -3.802 15.862 18.980 hybrid contribution 0.761 0.413 -0.980 1.307 sum -8.946 -3.390 14.882 17.691 Atomic orbital electron populations 1.22120 0.96550 1.01232 1.01773 1.21917 0.92087 0.98954 0.86211 0.89799 1.21051 0.85870 0.97499 0.94153 1.43823 0.99080 1.22771 1.66364 1.20807 0.93991 0.89110 0.93776 1.19208 0.93802 0.89869 1.35342 0.91396 1.24969 0.98721 0.96068 0.99797 1.70070 1.16608 1.16690 1.51949 0.86219 0.81193 0.81907 0.77467 1.20266 1.21652 1.21752 1.46062 1.65918 1.13891 1.09368 1.20236 0.77679 0.87191 0.84397 1.90665 1.50668 1.15929 1.85259 1.21376 1.01105 0.96482 0.94279 0.87947 1.21404 1.01878 0.98081 0.92178 1.20510 1.00403 0.90291 1.00059 1.21420 0.90645 0.95916 0.88082 1.68402 1.23240 1.12371 1.19566 1.24886 0.89349 0.87224 0.98660 1.68412 1.14785 1.36614 1.03926 1.23295 0.93902 0.91525 0.92892 1.21124 1.00888 0.97220 0.98748 1.20280 0.99939 0.97377 0.92475 0.92944 0.91973 0.93073 0.94178 0.91935 0.95056 0.94101 0.99026 0.93840 0.76814 0.90862 0.89190 0.88782 0.88788 0.78905 0.81400 0.89400 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.48 37.16 0.35 -1.77 16 2 C 0.12 1.92 2.88 -67.93 -0.20 1.72 16 3 H 0.08 1.68 7.58 -51.93 -0.39 1.29 16 4 C 0.14 2.64 5.29 -4.05 -0.02 2.62 16 5 N -0.60 -13.91 2.78 -181.12 -0.50 -14.42 16 6 C 0.17 3.76 8.52 59.85 0.51 4.26 16 7 C -0.25 -6.73 9.66 -15.06 -0.15 -6.87 16 8 H 0.07 1.81 7.87 -52.48 -0.41 1.40 16 9 C 0.00 0.07 5.08 -17.43 -0.09 -0.02 16 10 N -0.91 -25.74 10.71 55.49 0.59 -25.15 16 11 Si 0.90 21.76 29.58 -169.99 -5.03 16.73 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 N -0.70 -10.59 4.44 -53.80 -0.24 -10.83 16 16 C 0.52 7.93 7.11 -10.98 -0.08 7.85 16 17 O -0.55 -10.29 15.51 5.55 0.09 -10.20 16 18 C -0.11 -1.28 2.54 -91.69 -0.23 -1.51 16 19 H 0.10 1.19 8.10 -51.93 -0.42 0.77 16 20 C -0.10 -1.06 4.70 -26.67 -0.13 -1.19 16 21 C -0.08 -0.73 5.95 -28.10 -0.17 -0.90 16 22 C 0.18 2.00 6.62 -82.43 -0.55 1.46 16 23 N -0.52 -5.98 10.32 -11.00 -0.11 -6.09 16 24 C 0.29 2.93 12.29 -92.31 -1.13 1.80 16 25 N -0.52 -5.64 10.44 -14.54 -0.15 -5.79 16 26 C 0.15 1.43 10.94 -17.11 -0.19 1.25 16 27 C -0.18 -1.74 5.73 -104.68 -0.60 -2.34 16 28 C -0.06 -0.57 4.90 -28.15 -0.14 -0.71 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.04 0.67 8.07 -51.93 -0.42 0.25 16 33 H 0.06 1.17 8.04 -51.93 -0.42 0.76 16 34 H 0.03 0.78 7.35 -51.93 -0.38 0.40 16 35 H 0.04 1.01 7.31 -51.93 -0.38 0.63 16 36 H -0.01 -0.15 5.76 -51.93 -0.30 -0.45 16 37 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 38 H 0.40 5.43 5.90 -40.82 -0.24 5.19 16 39 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 40 H 0.09 1.09 7.81 -51.93 -0.41 0.68 16 41 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.19 1.35 8.06 -52.48 -0.42 0.92 16 44 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 45 H 0.09 0.78 8.11 -51.93 -0.42 0.36 16 46 H 0.09 0.68 7.89 -51.93 -0.41 0.27 16 LS Contribution 369.83 15.07 5.57 5.57 Total: -1.00 -32.43 369.83 -9.70 -42.12 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -7.12 Total: 2.39 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -2.80 Total: 5.66 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: -0.41 Total: -62.28 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.20 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.43 -9.70 -42.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754313147.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.714 kcal (2) G-P(sol) polarization free energy of solvation -32.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds