Wall clock time and date at job start Tue Mar 31 2020 12:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47159 * 2 1 4 4 C 1.52999 * 109.46956 * 119.99923 * 2 1 3 5 5 N 1.46502 * 109.46926 * 174.99832 * 4 2 1 6 6 C 1.46506 * 119.99787 * 89.99959 * 5 4 2 7 7 C 1.36933 * 120.00271 * 270.00142 * 5 4 2 8 8 H 1.07999 * 119.99714 * 22.01077 * 7 5 4 9 9 C 1.38808 * 120.00229 * 202.01609 * 7 5 4 10 10 N 1.31623 * 120.00217 * 14.20816 * 9 7 5 11 11 Si 1.86800 * 120.00106 * 194.21345 * 9 7 5 12 12 H 1.48498 * 109.47221 * 89.99923 * 11 9 7 13 13 H 1.48502 * 109.47199 * 209.99651 * 11 9 7 14 14 H 1.48504 * 109.47312 * 329.99532 * 11 9 7 15 15 N 1.46498 * 109.46904 * 239.99687 * 2 1 3 16 16 C 1.34784 * 119.99730 * 85.00212 * 15 2 1 17 17 O 1.21282 * 120.00037 * 0.02562 * 16 15 2 18 18 C 1.50701 * 119.99826 * 179.97438 * 16 15 2 19 19 H 1.08995 * 109.63556 * 300.40548 * 18 16 15 20 20 C 1.53307 * 109.63261 * 179.97438 * 18 16 15 21 21 C 1.52818 * 108.51583 * 170.52094 * 20 18 16 22 22 C 1.50445 * 110.44806 * 51.03748 * 21 20 18 23 23 N 1.32896 * 118.53434 * 162.33013 * 22 21 20 24 24 C 1.31598 * 121.06062 * 179.77331 * 23 22 21 25 25 N 1.31817 * 121.67452 * 359.96154 * 24 23 22 26 26 C 1.32197 * 120.63818 * 0.12337 * 25 24 23 27 27 C 1.37763 * 122.58103 * 342.27774 * 22 21 20 28 28 C 1.50346 * 122.80165 * 0.64747 * 27 22 21 29 29 H 1.08997 * 109.47159 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47425 * 300.00359 * 1 2 3 31 31 H 1.09006 * 109.47421 * 60.00003 * 1 2 3 32 32 H 1.09002 * 109.47114 * 54.99976 * 4 2 1 33 33 H 1.08997 * 109.47530 * 294.99969 * 4 2 1 34 34 H 1.08998 * 109.46601 * 95.14428 * 6 5 4 35 35 H 1.08994 * 109.47021 * 215.13935 * 6 5 4 36 36 H 1.09001 * 109.47136 * 335.14408 * 6 5 4 37 37 H 0.97000 * 120.00147 * 179.97438 * 10 9 7 38 38 H 0.96998 * 120.00400 * 265.00134 * 15 2 1 39 39 H 1.08994 * 109.63306 * 290.22841 * 20 18 16 40 40 H 1.08999 * 109.62674 * 50.81826 * 20 18 16 41 41 H 1.09006 * 109.30456 * 171.33536 * 21 20 18 42 42 H 1.08998 * 109.30446 * 290.93217 * 21 20 18 43 43 H 1.08001 * 119.16298 * 179.97438 * 24 23 22 44 44 H 1.08000 * 120.35841 * 180.02562 * 26 25 24 45 45 H 1.09004 * 109.31039 * 222.11936 * 28 27 22 46 46 H 1.09006 * 109.30015 * 102.71727 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.3343 0.2341 1.7612 7 6 4.0849 -1.9158 0.6023 8 1 3.5311 -2.5055 -0.1132 9 6 5.3896 -2.2624 0.9256 10 7 5.9683 -1.7334 1.9828 11 14 6.3241 -3.4793 -0.1397 12 1 7.0473 -2.7468 -1.2101 13 1 7.2998 -4.2227 0.6973 14 1 5.3683 -4.4360 -0.7534 15 7 2.0182 -0.6907 -1.1961 16 6 2.1470 -0.0183 -2.3572 17 8 1.8590 1.1586 -2.4115 18 6 2.6498 -0.7286 -3.5875 19 1 3.6462 -1.1278 -3.3984 20 6 2.7021 0.2531 -4.7638 21 6 3.4317 -0.4201 -5.9256 22 6 2.8390 -1.7744 -6.2044 23 7 3.0911 -2.3488 -7.3760 24 6 2.6017 -3.5344 -7.6703 25 7 1.8452 -4.2011 -6.8213 26 6 1.5508 -3.6916 -5.6376 27 6 2.0482 -2.4399 -5.2936 28 6 1.6964 -1.8671 -3.9487 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.6053 -1.7198 1.2952 33 1 1.7516 -0.1583 2.1370 34 1 4.6181 -0.0349 2.7787 35 1 5.2312 0.3570 1.1543 36 1 3.7742 1.1691 1.7754 37 1 6.8799 -1.9758 2.2090 38 1 2.2489 -1.6318 -1.1526 39 1 1.6887 0.5130 -5.0693 40 1 3.2401 1.1531 -4.4659 41 1 3.3430 0.2024 -6.8161 42 1 4.4851 -0.5363 -5.6708 43 1 2.8258 -3.9724 -8.6317 44 1 0.9309 -4.2419 -4.9453 45 1 1.7674 -2.6501 -3.1937 46 1 0.6749 -1.4873 -3.9750 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754313148.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:34 Heat of formation + Delta-G solvation = 18.371263 kcal Electronic energy + Delta-G solvation = -27477.795223 eV Core-core repulsion = 23788.538981 eV Total energy + Delta-G solvation = -3689.256242 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.51860 -39.64789 -37.09143 -36.12910 -34.24851 -34.06968 -31.69948 -31.48789 -30.64423 -29.59227 -26.24555 -25.67624 -25.45025 -24.39205 -23.16117 -22.14631 -21.13861 -19.99516 -19.56335 -17.95767 -17.14070 -16.97407 -16.39076 -15.78463 -15.35982 -15.14933 -14.98562 -14.36169 -14.03774 -13.98204 -13.91470 -13.66364 -13.49900 -13.23051 -13.03017 -12.94217 -12.41788 -12.11290 -11.94684 -11.89923 -11.64803 -11.24190 -11.10563 -11.02261 -10.94506 -10.91571 -10.88504 -10.52032 -10.44726 -10.36284 -10.05927 -9.94865 -9.39891 -9.36413 -9.28911 -8.63374 -8.47428 -6.82202 -5.80614 -3.26889 0.73480 0.87737 3.03717 3.29046 3.34093 3.38252 3.56934 3.62688 3.83995 4.02999 4.27631 4.39757 4.43834 4.50101 4.76081 4.92380 5.11332 5.16410 5.26037 5.29229 5.38133 5.39530 5.42525 5.48650 5.56896 5.67324 5.70760 5.78769 5.89303 5.92046 6.04259 6.10536 6.15122 6.17470 6.28472 6.41218 6.42875 6.71672 6.78574 6.81454 7.08292 7.32859 7.60824 7.71468 7.91388 8.07039 8.29484 8.70672 9.13895 9.78065 10.28175 11.23639 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.011773 B = 0.004454 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.704567 B = 6285.518807 C = 7588.633699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.117 3.883 3 H 0.077 0.923 4 C 0.141 3.859 5 N -0.599 5.599 6 C 0.163 3.837 7 C -0.253 4.253 8 H 0.064 0.936 9 C 0.005 3.995 10 N -0.902 5.902 11 Si 0.897 3.103 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.279 1.279 15 N -0.694 5.694 16 C 0.521 3.479 17 O -0.555 6.555 18 C -0.112 4.112 19 H 0.104 0.896 20 C -0.096 4.096 21 C -0.075 4.075 22 C 0.183 3.817 23 N -0.522 5.522 24 C 0.286 3.714 25 N -0.524 5.524 26 C 0.151 3.849 27 C -0.174 4.174 28 C -0.063 4.063 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.031 0.969 35 H 0.040 0.960 36 H -0.002 1.002 37 H 0.253 0.747 38 H 0.402 0.598 39 H 0.072 0.928 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.194 0.806 44 H 0.169 0.831 45 H 0.089 0.911 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.483 -0.332 -12.700 15.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.009 3.991 3 H 0.095 0.905 4 C 0.013 3.987 5 N -0.321 5.321 6 C 0.018 3.982 7 C -0.382 4.382 8 H 0.082 0.918 9 C -0.194 4.194 10 N -0.546 5.546 11 Si 0.727 3.273 12 H -0.215 1.215 13 H -0.217 1.217 14 H -0.205 1.205 15 N -0.344 5.344 16 C 0.306 3.694 17 O -0.434 6.434 18 C -0.133 4.133 19 H 0.122 0.878 20 C -0.134 4.134 21 C -0.113 4.113 22 C 0.039 3.961 23 N -0.236 5.236 24 C -0.002 4.002 25 N -0.238 5.238 26 C -0.016 4.016 27 C -0.178 4.178 28 C -0.102 4.102 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.058 0.942 36 H 0.016 0.984 37 H 0.063 0.937 38 H 0.239 0.761 39 H 0.091 0.909 40 H 0.107 0.893 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.211 0.789 44 H 0.186 0.814 45 H 0.107 0.893 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.273 0.059 -13.515 16.390 hybrid contribution 0.681 -0.952 0.249 1.197 sum -8.593 -0.893 -13.266 15.831 Atomic orbital electron populations 1.22118 0.96554 1.01385 1.01636 1.21871 0.92163 0.98318 0.86746 0.90505 1.21057 0.86106 0.98231 0.93325 1.43824 0.98871 1.21075 1.68314 1.20778 0.92852 0.86265 0.98271 1.18973 0.96776 1.05128 1.17337 0.91792 1.24969 0.98815 0.98858 0.96725 1.70065 1.13704 1.46199 1.24659 0.86389 0.80152 0.80827 0.79957 1.21516 1.21681 1.20474 1.45977 1.65192 1.14343 1.08859 1.20216 0.77593 0.87112 0.84492 1.90643 1.51333 1.16010 1.85441 1.21375 1.01273 0.96441 0.94209 0.87762 1.21392 1.01792 0.98039 0.92216 1.20518 1.00412 0.90309 1.00020 1.21419 0.90685 0.95955 0.88072 1.68398 1.23253 1.12364 1.19616 1.24869 0.89369 0.87283 0.98702 1.68412 1.14936 1.36517 1.03894 1.23303 0.93949 0.91536 0.92844 1.21135 1.00734 0.97203 0.98758 1.20298 0.99834 0.97537 0.92497 0.92904 0.92137 0.92938 0.93033 0.93057 0.95109 0.94166 0.98381 0.93674 0.76130 0.90917 0.89289 0.88814 0.88816 0.78947 0.81381 0.89280 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 9.48 37.16 0.35 -1.78 16 2 C 0.12 1.93 2.88 -67.93 -0.20 1.74 16 3 H 0.08 1.47 7.58 -51.93 -0.39 1.07 16 4 C 0.14 2.60 5.30 -4.04 -0.02 2.58 16 5 N -0.60 -13.80 2.82 -181.12 -0.51 -14.31 16 6 C 0.16 3.89 8.98 59.85 0.54 4.43 16 7 C -0.25 -6.22 8.85 -15.06 -0.13 -6.35 16 8 H 0.06 1.46 6.23 -52.49 -0.33 1.14 16 9 C 0.01 0.14 5.08 -17.43 -0.09 0.05 16 10 N -0.90 -25.28 10.72 55.49 0.59 -24.69 16 11 Si 0.90 20.68 29.58 -169.99 -5.03 15.65 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 15 N -0.69 -11.12 4.40 -53.81 -0.24 -11.36 16 16 C 0.52 8.31 7.09 -10.98 -0.08 8.23 16 17 O -0.56 -10.52 15.51 5.56 0.09 -10.44 16 18 C -0.11 -1.42 2.55 -91.70 -0.23 -1.65 16 19 H 0.10 1.39 8.10 -51.93 -0.42 0.97 16 20 C -0.10 -1.12 4.70 -26.67 -0.13 -1.25 16 21 C -0.07 -0.80 5.96 -28.10 -0.17 -0.96 16 22 C 0.18 2.19 6.62 -82.43 -0.55 1.64 16 23 N -0.52 -6.48 10.32 -11.00 -0.11 -6.59 16 24 C 0.29 3.20 12.29 -92.30 -1.13 2.06 16 25 N -0.52 -6.20 10.44 -14.54 -0.15 -6.35 16 26 C 0.15 1.62 10.94 -17.11 -0.19 1.43 16 27 C -0.17 -1.94 5.73 -104.68 -0.60 -2.54 16 28 C -0.06 -0.66 4.89 -28.14 -0.14 -0.80 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.92 8.04 -51.93 -0.42 0.50 16 33 H 0.05 0.90 8.07 -51.93 -0.42 0.48 16 34 H 0.03 0.79 7.36 -51.93 -0.38 0.41 16 35 H 0.04 1.04 7.31 -51.93 -0.38 0.66 16 36 H 0.00 -0.05 8.03 -51.93 -0.42 -0.47 16 37 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.40 6.30 6.19 -40.82 -0.25 6.05 16 39 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 40 H 0.09 1.12 7.82 -51.93 -0.41 0.71 16 41 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.19 1.51 8.06 -52.49 -0.42 1.09 16 44 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 45 H 0.09 0.85 7.89 -51.93 -0.41 0.44 16 46 H 0.09 0.86 8.11 -51.93 -0.42 0.44 16 LS Contribution 370.41 15.07 5.58 5.58 Total: -1.00 -31.25 370.41 -9.70 -40.94 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -7.16 Total: 4.75 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: -2.76 Total: 6.82 kcal Atomic # 7 Polarization: -62.88 SS G_CDS: -0.42 Total: -63.30 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.25 -9.70 -40.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754313148.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.314 kcal (2) G-P(sol) polarization free energy of solvation -31.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds