Wall clock time and date at job start Tue Mar 31 2020 12:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47268 * 2 1 4 4 C 1.53000 * 109.46637 * 119.99888 * 2 1 3 5 5 N 1.46504 * 109.46695 * 175.00067 * 4 2 1 6 6 C 1.46505 * 119.99738 * 270.00014 * 5 4 2 7 7 C 1.36935 * 120.00193 * 90.00003 * 5 4 2 8 8 H 1.08003 * 119.99933 * 20.36325 * 7 5 4 9 9 C 1.38817 * 119.99921 * 200.36238 * 7 5 4 10 10 N 1.31620 * 120.00089 * 15.02153 * 9 7 5 11 11 Si 1.86800 * 119.99748 * 195.01458 * 9 7 5 12 12 H 1.48496 * 109.46999 * 85.00398 * 11 9 7 13 13 H 1.48503 * 109.47002 * 205.00309 * 11 9 7 14 14 H 1.48497 * 109.47196 * 325.00187 * 11 9 7 15 15 N 1.46501 * 109.46931 * 239.99815 * 2 1 3 16 16 C 1.34771 * 119.99777 * 85.00352 * 15 2 1 17 17 O 1.21291 * 120.00211 * 359.97438 * 16 15 2 18 18 C 1.50701 * 120.00065 * 179.97438 * 16 15 2 19 19 H 1.09004 * 109.62859 * 59.59518 * 18 16 15 20 20 C 1.53311 * 109.63876 * 179.97438 * 18 16 15 21 21 C 1.52802 * 108.51244 * 189.69579 * 20 18 16 22 22 C 1.50441 * 110.45085 * 308.95612 * 21 20 18 23 23 N 1.32889 * 118.53312 * 197.48048 * 22 21 20 24 24 C 1.31602 * 121.06621 * 180.27895 * 23 22 21 25 25 N 1.31817 * 121.66447 * 0.36681 * 24 23 22 26 26 C 1.32192 * 120.64307 * 359.34135 * 25 24 23 27 27 C 1.37770 * 122.57932 * 17.70015 * 22 21 20 28 28 C 1.50341 * 122.80185 * 359.41244 * 27 22 21 29 29 H 1.08998 * 109.46802 * 59.99979 * 1 2 3 30 30 H 1.08996 * 109.47268 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46896 * 300.00363 * 1 2 3 32 32 H 1.09003 * 109.47532 * 294.99261 * 4 2 1 33 33 H 1.08993 * 109.47288 * 55.00337 * 4 2 1 34 34 H 1.08999 * 109.46763 * 95.14454 * 6 5 4 35 35 H 1.09003 * 109.46859 * 215.14301 * 6 5 4 36 36 H 1.08999 * 109.47492 * 335.14241 * 6 5 4 37 37 H 0.97000 * 119.99902 * 180.02562 * 10 9 7 38 38 H 0.96995 * 119.99956 * 265.00022 * 15 2 1 39 39 H 1.08998 * 109.62889 * 69.98541 * 20 18 16 40 40 H 1.09003 * 109.62656 * 309.40442 * 20 18 16 41 41 H 1.09004 * 109.31055 * 188.65449 * 21 20 18 42 42 H 1.08997 * 109.30754 * 69.25903 * 21 20 18 43 43 H 1.08001 * 119.16681 * 180.09855 * 24 23 22 44 44 H 1.07994 * 120.36350 * 180.23916 * 26 25 24 45 45 H 1.09000 * 109.31260 * 257.22307 * 28 27 22 46 46 H 1.08997 * 109.30968 * 137.82034 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1258 -1.9920 0.5613 7 6 4.2799 0.1648 1.7241 8 1 3.8670 0.8404 2.4587 9 6 5.6011 0.3013 1.3206 10 7 6.0236 -0.3087 0.2335 11 14 6.7792 1.3509 2.3205 12 1 7.3495 0.5391 3.4254 13 1 7.8764 1.8348 1.4445 14 1 6.0484 2.5131 2.8864 15 7 2.0184 -0.6907 -1.1962 16 6 2.1471 -0.0183 -2.3571 17 8 1.8583 1.1584 -2.4117 18 6 2.6499 -0.7286 -3.5874 19 1 1.9833 -1.5560 -3.8307 20 6 2.7023 0.2531 -4.7638 21 6 2.9783 -0.5364 -6.0427 22 6 4.1727 -1.4326 -5.8596 23 7 4.7718 -1.9206 -6.9408 24 6 5.8170 -2.7136 -6.8385 25 7 6.3085 -3.0628 -5.6663 26 6 5.7681 -2.6113 -4.5475 27 6 4.6644 -1.7690 -4.6174 28 6 4.0605 -1.2612 -3.3376 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.7517 -0.1582 2.1370 33 1 1.6054 -1.7197 1.2952 34 1 4.3630 -1.7605 -0.4771 35 1 5.0415 -2.2455 1.0954 36 1 3.4384 -2.8372 0.5972 37 1 6.9469 -0.2136 -0.0481 38 1 2.2490 -1.6318 -1.1526 39 1 3.5005 0.9774 -4.6011 40 1 1.7470 0.7705 -4.8518 41 1 3.1708 0.1580 -6.8605 42 1 2.1064 -1.1432 -6.2868 43 1 6.2811 -3.0914 -7.7375 44 1 6.1768 -2.8972 -3.5897 45 1 4.6827 -0.4602 -2.9384 46 1 4.0157 -2.0741 -2.6129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754313149.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:38 Heat of formation + Delta-G solvation = 18.684639 kcal Electronic energy + Delta-G solvation = -27835.643550 eV Core-core repulsion = 24146.400897 eV Total energy + Delta-G solvation = -3689.242653 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.33314 -39.53897 -36.97218 -36.06598 -34.07012 -34.00858 -31.55690 -31.33428 -30.61057 -29.49290 -26.24853 -25.68331 -25.25424 -24.23628 -22.93987 -22.08801 -20.95408 -20.05074 -19.41772 -17.74687 -16.95936 -16.84259 -16.57382 -15.68142 -15.15466 -14.96905 -14.67630 -14.31992 -13.98156 -13.79634 -13.74106 -13.60287 -13.38222 -13.20603 -12.91868 -12.75480 -12.27372 -12.10220 -12.04248 -11.64977 -11.48444 -11.21467 -11.04820 -10.88395 -10.87660 -10.79858 -10.75141 -10.56804 -10.36082 -10.24217 -10.00194 -9.87579 -9.25273 -9.15560 -9.12914 -8.63211 -8.38058 -6.82738 -5.78400 -3.19949 0.93984 1.05911 3.13808 3.36817 3.44053 3.44165 3.70921 3.77058 3.98165 4.23323 4.47008 4.48416 4.63561 4.71963 4.88273 5.06570 5.27866 5.30120 5.35109 5.41572 5.43162 5.50102 5.55899 5.65999 5.73050 5.79374 5.83562 5.95756 5.99243 6.06583 6.13508 6.20709 6.22214 6.34562 6.43877 6.48532 6.50838 6.57799 6.84975 7.00020 7.15601 7.26083 7.57069 7.76763 8.09168 8.09945 8.32649 8.79683 9.18299 9.81167 10.28018 11.27130 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.011607 B = 0.004701 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.694254 B = 5955.061327 C = 7428.664315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.116 3.884 3 H 0.085 0.915 4 C 0.143 3.857 5 N -0.597 5.597 6 C 0.160 3.840 7 C -0.254 4.254 8 H 0.068 0.932 9 C 0.006 3.994 10 N -0.904 5.904 11 Si 0.902 3.098 12 H -0.289 1.289 13 H -0.292 1.292 14 H -0.281 1.281 15 N -0.697 5.697 16 C 0.524 3.476 17 O -0.549 6.549 18 C -0.106 4.106 19 H 0.093 0.907 20 C -0.098 4.098 21 C -0.070 4.070 22 C 0.174 3.826 23 N -0.525 5.525 24 C 0.280 3.720 25 N -0.523 5.523 26 C 0.154 3.846 27 C -0.166 4.166 28 C -0.063 4.063 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.034 0.966 35 H 0.043 0.957 36 H -0.006 1.006 37 H 0.250 0.750 38 H 0.394 0.606 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.192 0.808 44 H 0.173 0.827 45 H 0.102 0.898 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.200 -5.822 -9.832 13.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.009 3.991 3 H 0.103 0.897 4 C 0.014 3.986 5 N -0.319 5.319 6 C 0.015 3.985 7 C -0.383 4.383 8 H 0.086 0.914 9 C -0.193 4.193 10 N -0.549 5.549 11 Si 0.732 3.268 12 H -0.216 1.216 13 H -0.219 1.219 14 H -0.207 1.207 15 N -0.346 5.346 16 C 0.309 3.691 17 O -0.428 6.428 18 C -0.128 4.128 19 H 0.111 0.889 20 C -0.137 4.137 21 C -0.108 4.108 22 C 0.030 3.970 23 N -0.239 5.239 24 C -0.008 4.008 25 N -0.237 5.237 26 C -0.013 4.013 27 C -0.170 4.170 28 C -0.101 4.101 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.012 0.988 37 H 0.061 0.939 38 H 0.228 0.772 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.107 0.893 43 H 0.208 0.792 44 H 0.190 0.810 45 H 0.120 0.880 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.792 -5.350 -10.752 13.797 hybrid contribution 0.696 0.382 1.189 1.430 sum -6.096 -4.968 -9.563 12.381 Atomic orbital electron populations 1.22150 0.96964 1.01021 1.01660 1.21857 0.91611 0.99162 0.86483 0.89677 1.21186 0.85738 0.97224 0.94420 1.43897 0.99044 1.20828 1.68097 1.20890 0.94562 0.85082 0.97963 1.19174 0.92916 1.09597 1.16661 0.91415 1.24875 0.98476 0.99381 0.96521 1.70026 1.15825 1.46883 1.22147 0.86317 0.80951 0.80055 0.79463 1.21588 1.21875 1.20669 1.45801 1.65899 1.13604 1.09292 1.20190 0.77385 0.87105 0.84424 1.90652 1.51034 1.15867 1.85197 1.21324 0.97634 0.99280 0.94520 0.88905 1.21406 1.04013 0.96991 0.91249 1.20447 0.93821 0.97051 0.99498 1.21351 0.94888 0.92866 0.87887 1.68350 1.10433 1.11604 1.33513 1.24812 0.89511 0.90835 0.95650 1.68420 1.31474 1.24451 0.99325 1.23410 0.90225 0.89989 0.97672 1.21223 0.98706 1.00015 0.97009 1.20326 0.94446 1.02477 0.92898 0.92993 0.93256 0.92171 0.92354 0.94061 0.94830 0.93836 0.98769 0.93946 0.77208 0.90622 0.89637 0.89027 0.89317 0.79156 0.81006 0.87953 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.48 37.16 0.35 -1.91 16 2 C 0.12 2.04 2.88 -67.93 -0.20 1.84 16 3 H 0.09 1.84 7.58 -51.93 -0.39 1.45 16 4 C 0.14 2.60 5.33 -4.04 -0.02 2.57 16 5 N -0.60 -13.41 2.78 -181.11 -0.50 -13.91 16 6 C 0.16 3.39 7.60 59.85 0.45 3.85 16 7 C -0.25 -6.57 9.68 -15.06 -0.15 -6.71 16 8 H 0.07 1.75 7.86 -52.48 -0.41 1.34 16 9 C 0.01 0.15 5.06 -17.43 -0.09 0.07 16 10 N -0.90 -24.11 10.67 55.49 0.59 -23.52 16 11 Si 0.90 21.42 29.58 -169.99 -5.03 16.39 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 N -0.70 -11.46 4.34 -53.80 -0.23 -11.70 16 16 C 0.52 8.93 7.10 -10.99 -0.08 8.85 16 17 O -0.55 -11.35 15.51 5.55 0.09 -11.26 16 18 C -0.11 -1.41 2.54 -91.69 -0.23 -1.65 16 19 H 0.09 1.03 8.10 -51.93 -0.42 0.61 16 20 C -0.10 -1.25 4.70 -26.67 -0.13 -1.37 16 21 C -0.07 -0.78 5.95 -28.11 -0.17 -0.94 16 22 C 0.17 2.28 6.62 -82.43 -0.55 1.74 16 23 N -0.52 -7.03 10.32 -11.00 -0.11 -7.14 16 24 C 0.28 3.51 12.29 -92.30 -1.13 2.37 16 25 N -0.52 -7.22 10.44 -14.54 -0.15 -7.37 16 26 C 0.15 2.08 10.94 -17.11 -0.19 1.90 16 27 C -0.17 -2.22 5.73 -104.68 -0.60 -2.82 16 28 C -0.06 -0.88 4.90 -28.14 -0.14 -1.02 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 1.05 8.03 -51.93 -0.42 0.64 16 33 H 0.04 0.66 7.86 -51.93 -0.41 0.25 16 34 H 0.03 0.73 6.17 -51.93 -0.32 0.41 16 35 H 0.04 1.04 7.22 -51.93 -0.37 0.67 16 36 H -0.01 -0.11 7.83 -51.93 -0.41 -0.52 16 37 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 38 H 0.39 5.89 6.88 -40.82 -0.28 5.61 16 39 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 40 H 0.09 1.07 7.81 -51.93 -0.41 0.67 16 41 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.19 1.72 8.06 -52.49 -0.42 1.29 16 44 H 0.17 2.11 8.06 -52.49 -0.42 1.68 16 45 H 0.10 1.78 8.11 -51.93 -0.42 1.36 16 46 H 0.09 1.21 7.09 -51.93 -0.37 0.85 16 LS Contribution 369.56 15.07 5.57 5.57 Total: -1.00 -30.64 369.56 -9.78 -40.42 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -7.14 Total: 5.76 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: -2.85 Total: 6.77 kcal Atomic # 7 Polarization: -63.23 SS G_CDS: -0.41 Total: -63.64 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.64 -9.78 -40.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754313149.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.105 kcal (2) G-P(sol) polarization free energy of solvation -30.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds