Wall clock time and date at job start Tue Mar 31 2020 12:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08991 * 109.47361 * 2 1 4 4 C 1.53001 * 109.47051 * 239.99915 * 2 1 3 5 5 N 1.46497 * 109.47575 * 185.00291 * 4 2 1 6 6 C 1.46501 * 120.00104 * 89.99758 * 5 4 2 7 7 C 1.36940 * 119.99975 * 270.00425 * 5 4 2 8 8 H 1.07996 * 120.00024 * 21.98100 * 7 5 4 9 9 C 1.38813 * 119.99916 * 201.97558 * 7 5 4 10 10 N 1.31621 * 119.99734 * 13.87408 * 9 7 5 11 11 Si 1.86798 * 119.99765 * 193.86553 * 9 7 5 12 12 H 1.48502 * 109.46871 * 90.00570 * 11 9 7 13 13 H 1.48495 * 109.47167 * 210.00228 * 11 9 7 14 14 H 1.48494 * 109.47545 * 330.00416 * 11 9 7 15 15 N 1.46499 * 109.47000 * 120.00690 * 2 1 3 16 16 C 1.34783 * 119.99340 * 275.27244 * 15 2 1 17 17 O 1.21283 * 120.00099 * 359.72097 * 16 15 2 18 18 C 1.50703 * 119.99712 * 179.72784 * 16 15 2 19 19 H 1.08996 * 109.63252 * 300.40093 * 18 16 15 20 20 C 1.53307 * 109.63366 * 179.97438 * 18 16 15 21 21 C 1.52814 * 108.52081 * 170.51522 * 20 18 16 22 22 C 1.50452 * 110.44692 * 51.03073 * 21 20 18 23 23 N 1.32890 * 118.53668 * 162.33038 * 22 21 20 24 24 C 1.31594 * 121.06740 * 179.77086 * 23 22 21 25 25 N 1.31818 * 121.66853 * 359.97198 * 24 23 22 26 26 C 1.32187 * 120.64082 * 0.11476 * 25 24 23 27 27 C 1.37770 * 122.57901 * 342.27959 * 22 21 20 28 28 C 1.50336 * 122.80070 * 0.65228 * 27 22 21 29 29 H 1.09003 * 109.47135 * 300.00018 * 1 2 3 30 30 H 1.09007 * 109.47041 * 59.99690 * 1 2 3 31 31 H 1.08997 * 109.47769 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47173 * 305.00496 * 4 2 1 33 33 H 1.09002 * 109.46862 * 65.00021 * 4 2 1 34 34 H 1.09002 * 109.46947 * 95.30856 * 6 5 4 35 35 H 1.09000 * 109.47058 * 215.30990 * 6 5 4 36 36 H 1.09004 * 109.47245 * 335.30712 * 6 5 4 37 37 H 0.97002 * 119.99686 * 179.97438 * 10 9 7 38 38 H 0.96994 * 120.00711 * 94.99461 * 15 2 1 39 39 H 1.09004 * 109.62947 * 290.22490 * 20 18 16 40 40 H 1.08998 * 109.63058 * 50.80581 * 20 18 16 41 41 H 1.08997 * 109.31037 * 171.32902 * 21 20 18 42 42 H 1.08993 * 109.30731 * 290.93381 * 21 20 18 43 43 H 1.07998 * 119.17003 * 179.97438 * 24 23 22 44 44 H 1.08007 * 120.36589 * 180.02562 * 26 25 24 45 45 H 1.09011 * 109.30937 * 222.11652 * 28 27 22 46 46 H 1.08997 * 109.30624 * 102.71488 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1907 6 6 4.1257 -1.9921 -0.5613 7 6 4.2798 0.1647 -1.7241 8 1 3.8741 1.1561 -1.8614 9 6 5.5920 -0.1048 -2.0882 10 7 6.0064 -1.3506 -2.1815 11 14 6.7693 1.3006 -2.4460 12 1 7.4606 1.6983 -1.1932 13 1 7.7739 0.8620 -3.4477 14 1 6.0097 2.4588 -2.9812 15 7 2.0183 -0.6908 1.1961 16 6 2.1417 -0.0197 2.3585 17 8 1.8534 1.1571 2.4129 18 6 2.6382 -0.7317 3.5904 19 1 1.9700 -1.5590 3.8295 20 6 2.6866 0.2489 4.7678 21 6 2.9612 -0.5412 6.0467 22 6 4.1572 -1.4357 5.8653 23 7 4.7573 -1.9206 6.9473 24 6 5.8045 -2.7111 6.8464 25 7 6.3013 -3.0554 5.6749 26 6 5.7576 -2.6100 4.5554 27 6 4.6516 -1.7707 4.6237 28 6 4.0500 -1.2620 3.3433 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6053 -1.7198 -1.2952 33 1 1.7516 -0.1583 -2.1370 34 1 4.3680 -2.7311 -1.3251 35 1 5.0385 -1.6836 -0.0517 36 1 3.4362 -2.4289 0.1612 37 1 6.9232 -1.5389 -2.4363 38 1 2.2489 -1.6319 1.1526 39 1 3.4840 0.9746 4.6074 40 1 1.7303 0.7647 4.8543 41 1 3.1511 0.1528 6.8654 42 1 2.0911 -1.1522 6.2866 43 1 6.2686 -3.0874 7.7460 44 1 6.1681 -2.8953 3.5979 45 1 4.0081 -2.0740 2.6172 46 1 4.6721 -0.4596 2.9467 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754313150.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:42 Heat of formation + Delta-G solvation = 20.393885 kcal Electronic energy + Delta-G solvation = -27545.748558 eV Core-core repulsion = 23856.580023 eV Total energy + Delta-G solvation = -3689.168535 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.48568 -39.71760 -37.10801 -36.17811 -34.20834 -34.10398 -31.67871 -31.45996 -30.68136 -29.64205 -26.27526 -25.72348 -25.40314 -24.38445 -23.11175 -22.18990 -21.02063 -20.20162 -19.57533 -17.89366 -17.09133 -16.90136 -16.68885 -15.78849 -15.22346 -15.12151 -14.86834 -14.46527 -14.06702 -13.93287 -13.87794 -13.72011 -13.48102 -13.31947 -13.00526 -12.88297 -12.37401 -12.20632 -12.07958 -11.81511 -11.51411 -11.37302 -11.23531 -11.06262 -10.91835 -10.86733 -10.68583 -10.65645 -10.50010 -10.25034 -10.03827 -9.91404 -9.41364 -9.32029 -9.28115 -8.70430 -8.49639 -6.81007 -5.78157 -3.23731 0.78600 0.92175 2.95092 3.35918 3.43342 3.44207 3.53619 3.62414 3.85101 4.09646 4.31870 4.44698 4.46764 4.53636 4.71301 4.90506 5.12060 5.18101 5.23934 5.27233 5.34296 5.40245 5.41062 5.53282 5.59195 5.65982 5.73012 5.79117 5.89801 5.97361 5.98204 6.04254 6.12919 6.16118 6.32362 6.40287 6.48727 6.52448 6.75066 6.86153 7.02721 7.22368 7.60736 7.76395 7.93560 7.95991 8.32581 8.61518 9.17658 9.80134 10.27494 11.26506 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.011334 B = 0.004400 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.847010 B = 6361.450149 C = 7856.193141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.116 3.884 3 H 0.084 0.916 4 C 0.143 3.857 5 N -0.598 5.598 6 C 0.168 3.832 7 C -0.253 4.253 8 H 0.068 0.932 9 C 0.004 3.996 10 N -0.908 5.908 11 Si 0.901 3.099 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.279 1.279 15 N -0.702 5.702 16 C 0.518 3.482 17 O -0.547 6.547 18 C -0.107 4.107 19 H 0.097 0.903 20 C -0.098 4.098 21 C -0.071 4.071 22 C 0.177 3.823 23 N -0.524 5.524 24 C 0.284 3.716 25 N -0.522 5.522 26 C 0.153 3.847 27 C -0.171 4.171 28 C -0.066 4.066 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.040 0.960 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.041 0.959 36 H -0.009 1.009 37 H 0.252 0.748 38 H 0.396 0.604 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.193 0.807 44 H 0.172 0.828 45 H 0.090 0.910 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.308 -3.574 14.159 16.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.009 3.991 3 H 0.102 0.898 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.023 3.977 7 C -0.382 4.382 8 H 0.086 0.914 9 C -0.194 4.194 10 N -0.553 5.553 11 Si 0.732 3.268 12 H -0.216 1.216 13 H -0.218 1.218 14 H -0.205 1.205 15 N -0.353 5.353 16 C 0.304 3.696 17 O -0.425 6.425 18 C -0.129 4.129 19 H 0.115 0.885 20 C -0.137 4.137 21 C -0.109 4.109 22 C 0.033 3.967 23 N -0.238 5.238 24 C -0.004 4.004 25 N -0.236 5.236 26 C -0.014 4.014 27 C -0.175 4.175 28 C -0.104 4.104 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.009 0.991 37 H 0.062 0.938 38 H 0.232 0.768 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.210 0.790 44 H 0.189 0.811 45 H 0.109 0.891 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.894 -3.166 14.953 16.767 hybrid contribution 0.673 0.436 -0.971 1.260 sum -6.221 -2.730 13.982 15.545 Atomic orbital electron populations 1.22123 0.96580 1.01244 1.01778 1.21911 0.92089 0.98934 0.86207 0.89791 1.21052 0.85880 0.97506 0.94141 1.43807 0.99047 1.22733 1.66393 1.20827 0.93943 0.89111 0.93817 1.19173 0.93735 0.89879 1.35451 0.91446 1.24943 0.98660 0.96007 0.99777 1.70055 1.16651 1.16646 1.51977 0.86299 0.81065 0.81826 0.77652 1.21576 1.21772 1.20457 1.46061 1.65957 1.13952 1.09289 1.20279 0.77660 0.87225 0.84471 1.90665 1.50800 1.15854 1.85202 1.21345 0.97423 0.99521 0.94588 0.88509 1.21414 1.04150 0.96919 0.91183 1.20472 0.93817 0.97100 0.99528 1.21374 0.94778 0.92697 0.87832 1.68370 1.10431 1.11577 1.33413 1.24859 0.89301 0.90559 0.95692 1.68430 1.31555 1.24256 0.99312 1.23403 0.90237 0.89981 0.97751 1.21159 0.98914 1.00530 0.96926 1.20327 0.94658 1.02064 0.93381 0.92923 0.91976 0.93089 0.94185 0.91938 0.95089 0.93978 0.99080 0.93769 0.76813 0.90622 0.89457 0.88863 0.89161 0.78998 0.81070 0.89117 0.88759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.48 37.16 0.35 -1.80 16 2 C 0.12 1.92 2.88 -67.93 -0.20 1.72 16 3 H 0.08 1.67 7.58 -51.93 -0.39 1.28 16 4 C 0.14 2.62 5.29 -4.04 -0.02 2.59 16 5 N -0.60 -13.60 2.78 -181.12 -0.50 -14.11 16 6 C 0.17 3.62 8.52 59.85 0.51 4.13 16 7 C -0.25 -6.62 9.66 -15.06 -0.15 -6.77 16 8 H 0.07 1.78 7.87 -52.49 -0.41 1.36 16 9 C 0.00 0.12 5.09 -17.43 -0.09 0.03 16 10 N -0.91 -25.29 10.70 55.49 0.59 -24.69 16 11 Si 0.90 21.59 29.58 -169.99 -5.03 16.56 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 N -0.70 -10.57 4.44 -53.81 -0.24 -10.81 16 16 C 0.52 7.91 7.09 -10.98 -0.08 7.83 16 17 O -0.55 -10.28 15.52 5.55 0.09 -10.20 16 18 C -0.11 -1.24 2.55 -91.70 -0.23 -1.47 16 19 H 0.10 0.93 8.10 -51.93 -0.42 0.51 16 20 C -0.10 -1.08 4.70 -26.67 -0.13 -1.21 16 21 C -0.07 -0.69 5.96 -28.10 -0.17 -0.86 16 22 C 0.18 2.07 6.62 -82.43 -0.55 1.53 16 23 N -0.52 -6.38 10.32 -11.00 -0.11 -6.50 16 24 C 0.28 3.23 12.29 -92.31 -1.13 2.10 16 25 N -0.52 -6.58 10.44 -14.55 -0.15 -6.73 16 26 C 0.15 1.83 10.94 -17.11 -0.19 1.65 16 27 C -0.17 -2.01 5.73 -104.68 -0.60 -2.61 16 28 C -0.07 -0.77 4.89 -28.15 -0.14 -0.91 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.04 0.67 8.07 -51.93 -0.42 0.25 16 33 H 0.06 1.17 8.04 -51.93 -0.42 0.75 16 34 H 0.03 0.75 7.35 -51.93 -0.38 0.37 16 35 H 0.04 0.99 7.31 -51.93 -0.38 0.61 16 36 H -0.01 -0.16 5.77 -51.93 -0.30 -0.46 16 37 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 38 H 0.40 5.42 5.90 -40.82 -0.24 5.18 16 39 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 40 H 0.09 0.96 7.82 -51.93 -0.41 0.56 16 41 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.19 1.54 8.06 -52.49 -0.42 1.11 16 44 H 0.17 1.78 8.06 -52.48 -0.42 1.35 16 45 H 0.09 1.00 7.89 -51.92 -0.41 0.60 16 46 H 0.09 1.30 8.11 -51.93 -0.42 0.88 16 LS Contribution 369.80 15.07 5.57 5.57 Total: -1.00 -31.63 369.80 -9.70 -41.32 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -7.12 Total: 3.62 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: -2.80 Total: 5.95 kcal Atomic # 7 Polarization: -62.42 SS G_CDS: -0.41 Total: -62.83 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.20 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.63 -9.70 -41.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754313150.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.719 kcal (2) G-P(sol) polarization free energy of solvation -31.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds