Wall clock time and date at job start Tue Mar 31 2020 12:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86806 * 119.99899 * 2 1 4 4 H 1.48497 * 109.47178 * 240.00085 * 3 2 1 5 5 H 1.48499 * 109.47047 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46785 * 119.99832 * 3 2 1 7 7 C 1.38814 * 120.00561 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00362 * 196.11470 * 7 2 1 9 9 N 1.36939 * 119.99440 * 16.11118 * 7 2 1 10 10 C 1.46887 * 120.46426 * 28.85536 * 9 7 2 11 11 C 1.53356 * 108.74380 * 124.38335 * 10 9 7 12 12 C 1.52560 * 109.12667 * 52.26041 * 11 10 9 13 13 C 1.52958 * 114.06088 * 75.53826 * 12 11 10 14 14 N 1.47166 * 87.85441 * 139.44307 * 13 12 11 15 15 C 1.34779 * 136.00004 * 153.07753 * 14 13 12 16 16 O 1.21280 * 120.00177 * 0.02562 * 15 14 13 17 17 C 1.50696 * 119.99541 * 180.02562 * 15 14 13 18 18 H 1.08996 * 110.05530 * 356.72821 * 17 15 14 19 19 C 1.54388 * 110.06915 * 235.24522 * 17 15 14 20 20 C 1.54918 * 104.22502 * 217.22020 * 19 17 15 21 21 C 1.54992 * 102.82045 * 37.71702 * 20 19 17 22 22 C 1.53475 * 110.07022 * 118.27689 * 17 15 14 23 23 C 1.52553 * 121.08784 * 335.14035 * 22 17 15 24 24 C 1.52575 * 121.04948 * 263.42469 * 22 17 15 25 25 C 1.47171 * 87.99489 * 333.33746 * 14 13 12 26 26 C 1.52556 * 113.43069 * 302.67266 * 12 11 10 27 27 C 1.46890 * 120.46245 * 208.87323 * 9 7 2 28 28 H 0.96996 * 120.00387 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.59399 * 4.60960 * 10 9 7 30 30 H 1.09003 * 109.59662 * 244.16060 * 10 9 7 31 31 H 1.08999 * 109.53356 * 292.36697 * 11 10 9 32 32 H 1.08999 * 109.53259 * 172.15159 * 11 10 9 33 33 H 1.08998 * 113.49119 * 24.69690 * 13 12 11 34 34 H 1.09002 * 113.55069 * 254.19809 * 13 12 11 35 35 H 1.09010 * 110.47629 * 335.90342 * 19 17 15 36 36 H 1.08996 * 110.48456 * 98.53188 * 19 17 15 37 37 H 1.08999 * 110.74372 * 156.04824 * 20 19 17 38 38 H 1.08997 * 110.74426 * 279.38459 * 20 19 17 39 39 H 1.09005 * 110.51514 * 81.07027 * 21 20 19 40 40 H 1.08998 * 110.51114 * 203.64640 * 21 20 19 41 41 H 1.08994 * 117.50776 * 357.03572 * 23 22 17 42 42 H 1.09000 * 117.50926 * 142.12162 * 23 22 17 43 43 H 1.09000 * 117.51099 * 217.93846 * 24 22 17 44 44 H 1.08998 * 117.51172 * 3.03225 * 24 22 17 45 45 H 1.08997 * 113.48390 * 141.41134 * 25 14 13 46 46 H 1.09003 * 113.48702 * 271.91764 * 25 14 13 47 47 H 1.09002 * 109.52960 * 177.21739 * 26 12 11 48 48 H 1.09003 * 109.52428 * 297.41818 * 26 12 11 49 49 H 1.09009 * 109.58968 * 355.38575 * 27 9 7 50 50 H 1.09000 * 109.58939 * 115.82382 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0584 -1.2203 0.2601 9 7 1.3659 -2.3649 -0.3281 10 6 0.2209 -2.3474 -1.2479 11 6 0.5084 -3.3049 -2.4109 12 6 0.9031 -4.6678 -1.8504 13 6 -0.2716 -5.4819 -1.3055 14 7 0.3419 -6.6722 -1.9160 15 6 0.3334 -7.9984 -1.6760 16 8 -0.3078 -8.4425 -0.7473 17 6 1.1208 -8.9293 -2.5616 18 1 1.5854 -8.3694 -3.3732 19 6 0.1954 -10.0240 -3.1351 20 6 1.0754 -11.2990 -3.1461 21 6 1.8952 -11.1623 -1.8379 22 6 2.1940 -9.6561 -1.7397 23 6 2.7445 -9.0506 -0.4522 24 6 3.6314 -9.1463 -1.6963 25 6 0.9739 -5.7783 -2.8996 26 6 2.1088 -4.6140 -0.9173 27 6 1.8099 -3.6470 0.2347 28 1 -0.4850 0.8400 -0.0004 29 1 0.0765 -1.3379 -1.6328 30 1 -0.6764 -2.6718 -0.7208 31 1 1.3246 -2.9093 -3.0153 32 1 -0.3850 -3.4090 -3.0266 33 1 -1.2302 -5.2116 -1.7484 34 1 -0.3064 -5.5212 -0.2168 35 1 -0.6727 -10.1653 -2.4912 36 1 -0.1170 -9.7675 -4.1473 37 1 0.4561 -12.1957 -3.1216 38 1 1.7333 -11.3065 -4.0150 39 1 1.3062 -11.4914 -0.9817 40 1 2.8209 -11.7338 -1.9058 41 1 2.3835 -8.0628 -0.1659 42 1 2.9589 -9.7304 0.3724 43 1 4.4291 -9.8890 -1.6901 44 1 3.8539 -8.2213 -2.2284 45 1 1.9925 -6.0675 -3.1579 46 1 0.3536 -5.5885 -3.7756 47 1 2.3042 -5.6087 -0.5168 48 1 2.9813 -4.2646 -1.4694 49 1 2.7125 -3.4934 0.8264 50 1 1.0232 -4.0614 0.8651 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050562148.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:46 Heat of formation + Delta-G solvation = 38.676208 kcal Electronic energy + Delta-G solvation = -28161.530198 eV Core-core repulsion = 24576.694787 eV Total energy + Delta-G solvation = -3584.835410 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.97696 -39.65652 -37.46376 -35.86640 -34.32933 -32.50006 -30.80846 -30.00142 -29.32466 -27.01954 -26.21800 -25.54717 -24.14121 -22.59414 -22.38932 -21.38879 -20.83472 -19.92351 -18.29020 -17.97747 -17.12510 -16.43036 -15.98563 -15.82106 -15.27815 -15.02399 -14.82816 -14.24140 -14.01519 -13.76238 -13.56081 -13.41924 -13.09456 -12.88558 -12.73393 -12.61383 -12.28964 -11.95802 -11.75460 -11.58537 -11.52657 -11.40653 -11.31706 -11.08613 -11.05252 -10.87704 -10.72885 -10.49575 -10.38853 -10.33591 -10.13780 -10.04181 -9.82474 -9.65385 -9.60901 -9.25170 -8.52444 -8.46176 -6.66274 -5.79681 -3.23591 2.70775 2.92000 3.37521 3.43423 3.44321 3.63094 4.13445 4.41039 4.47715 4.49658 4.59019 4.67973 4.81439 4.95015 5.00423 5.08032 5.18375 5.25005 5.38065 5.39706 5.47211 5.51840 5.52654 5.55980 5.57932 5.60412 5.65954 5.69284 5.73828 5.78897 5.86087 5.94227 5.97897 5.99153 6.02643 6.06705 6.11949 6.13350 6.26434 6.45331 6.56489 6.61716 6.65498 6.80907 6.95176 7.32867 7.64985 7.78251 7.90513 8.30107 8.45406 9.20955 9.83868 10.40416 11.28308 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.028781 B = 0.003010 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.616823 B = 9300.019452 C = 9695.169831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.902 3.098 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.253 4.253 8 H 0.064 0.936 9 N -0.590 5.590 10 C 0.171 3.829 11 C -0.125 4.125 12 C -0.074 4.074 13 C 0.112 3.888 14 N -0.643 5.643 15 C 0.547 3.453 16 O -0.541 6.541 17 C -0.070 4.070 18 H 0.086 0.914 19 C -0.109 4.109 20 C -0.119 4.119 21 C -0.086 4.086 22 C -0.116 4.116 23 C -0.161 4.161 24 C -0.166 4.166 25 C 0.100 3.900 26 C -0.104 4.104 27 C 0.147 3.853 28 H 0.254 0.746 29 H 0.091 0.909 30 H 0.018 0.982 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.072 0.928 46 H 0.083 0.917 47 H 0.050 0.950 48 H 0.064 0.936 49 H 0.055 0.945 50 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.605 -19.096 -9.119 21.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.383 4.383 8 H 0.082 0.918 9 N -0.313 5.313 10 C 0.045 3.955 11 C -0.165 4.165 12 C -0.075 4.075 13 C -0.010 4.010 14 N -0.377 5.377 15 C 0.337 3.663 16 O -0.419 6.419 17 C -0.092 4.092 18 H 0.104 0.896 19 C -0.147 4.147 20 C -0.156 4.156 21 C -0.123 4.123 22 C -0.116 4.116 23 C -0.198 4.198 24 C -0.203 4.203 25 C -0.023 4.023 26 C -0.144 4.144 27 C 0.021 3.979 28 H 0.064 0.936 29 H 0.109 0.891 30 H 0.036 0.964 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.090 0.910 46 H 0.101 0.899 47 H 0.069 0.931 48 H 0.082 0.918 49 H 0.073 0.927 50 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 3.132 -19.420 -8.549 21.448 hybrid contribution 0.371 0.980 -0.084 1.052 sum 3.502 -18.440 -8.633 20.660 Atomic orbital electron populations 1.69995 1.05251 1.25626 1.53864 1.25055 0.95282 0.98388 1.00826 0.86374 0.78909 0.83377 0.78122 1.21034 1.21650 1.20911 1.19148 0.92263 0.84708 1.42171 0.91811 1.44008 1.35651 1.01751 1.49863 1.20797 0.88544 0.98464 0.87671 1.22080 1.00045 0.94153 1.00184 1.21691 0.96180 0.94211 0.95421 1.23056 0.96995 0.80801 1.00126 1.49814 1.50202 1.04348 1.33379 1.20024 0.81091 0.80059 0.85105 1.90680 1.44338 1.75207 1.31636 1.21339 0.95322 0.95585 0.96922 0.89553 1.22327 0.98072 0.93494 1.00793 1.22440 0.98052 0.97423 0.97698 1.21864 0.99828 0.92459 0.98144 1.21460 0.93905 0.95315 1.00924 1.22928 1.02905 1.02542 0.91380 1.23056 0.92433 1.02823 1.02024 1.23256 0.97977 0.87565 0.93527 1.21696 0.95599 0.99230 0.97852 1.20878 0.97595 0.86932 0.92521 0.93554 0.89057 0.96398 0.91925 0.92869 0.90071 0.90459 0.90298 0.91165 0.91143 0.91261 0.90859 0.91476 0.88713 0.88594 0.88558 0.88730 0.90965 0.89925 0.93123 0.91776 0.92669 0.96434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.65 11.14 55.49 0.62 -25.03 16 2 C 0.00 0.08 4.93 -17.43 -0.09 0.00 16 3 Si 0.90 21.29 29.58 -169.99 -5.03 16.27 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.25 -6.77 9.56 -15.06 -0.14 -6.92 16 8 H 0.06 1.68 7.88 -52.49 -0.41 1.27 16 9 N -0.59 -14.24 2.96 -172.18 -0.51 -14.75 16 10 C 0.17 3.85 5.26 -3.65 -0.02 3.83 16 11 C -0.12 -2.14 5.30 -26.77 -0.14 -2.28 16 12 C -0.07 -1.14 0.84 -155.02 -0.13 -1.27 16 13 C 0.11 1.77 7.56 -8.21 -0.06 1.71 16 14 N -0.64 -9.31 3.46 -185.12 -0.64 -9.95 16 15 C 0.55 8.26 5.53 -10.99 -0.06 8.20 16 16 O -0.54 -10.16 17.13 5.56 0.10 -10.07 16 17 C -0.07 -0.81 3.15 -90.80 -0.29 -1.10 16 18 H 0.09 0.90 7.41 -51.93 -0.39 0.51 16 19 C -0.11 -1.10 6.33 -24.99 -0.16 -1.26 16 20 C -0.12 -0.98 6.91 -24.67 -0.17 -1.15 16 21 C -0.09 -0.80 6.58 -25.23 -0.17 -0.96 16 22 C -0.12 -1.26 2.20 -154.25 -0.34 -1.60 16 23 C -0.16 -1.90 9.57 -26.91 -0.26 -2.16 16 24 C -0.17 -1.62 10.24 -26.90 -0.28 -1.90 16 25 C 0.10 1.24 7.15 -8.22 -0.06 1.18 16 26 C -0.10 -1.74 5.27 -26.78 -0.14 -1.88 16 27 C 0.15 3.02 6.41 -3.65 -0.02 3.00 16 28 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.09 2.33 5.95 -51.93 -0.31 2.02 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.05 0.80 8.09 -51.93 -0.42 0.38 16 33 H 0.08 1.22 8.06 -51.93 -0.42 0.80 16 34 H 0.08 1.37 7.53 -51.93 -0.39 0.98 16 35 H 0.08 0.94 7.45 -51.92 -0.39 0.56 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.52 8.11 -51.93 -0.42 0.10 16 41 H 0.09 1.34 7.30 -51.93 -0.38 0.96 16 42 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.07 0.80 8.00 -51.93 -0.42 0.39 16 46 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 47 H 0.05 0.80 7.95 -51.93 -0.41 0.39 16 48 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.05 1.12 7.92 -51.92 -0.41 0.71 16 50 H 0.02 0.38 7.60 -51.93 -0.39 -0.02 16 LS Contribution 385.47 15.07 5.81 5.81 Total: -1.00 -30.47 385.47 -11.12 -41.58 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -8.94 Total: 0.70 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -2.52 Total: -4.55 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: -0.53 Total: -49.73 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.10 Total: -10.07 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.47 -11.12 -41.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050562148.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.260 kcal (2) G-P(sol) polarization free energy of solvation -30.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds