Wall clock time and date at job start Tue Mar 31 2020 12:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47419 * 2 1 4 4 C 1.50696 * 109.47256 * 239.99671 * 2 1 3 5 5 H 1.08003 * 120.00486 * 241.34952 * 4 2 1 6 6 C 1.37884 * 119.99713 * 61.34665 * 4 2 1 7 7 N 1.31514 * 119.99773 * 193.97047 * 6 4 2 8 8 Si 1.86796 * 119.99951 * 13.98338 * 6 4 2 9 9 H 1.48495 * 109.47683 * 84.54256 * 8 6 4 10 10 H 1.48506 * 109.46767 * 204.54675 * 8 6 4 11 11 H 1.48499 * 109.46887 * 324.54289 * 8 6 4 12 12 C 1.52998 * 109.47064 * 119.99986 * 2 1 3 13 13 N 1.46504 * 109.47058 * 300.00323 * 12 2 1 14 14 C 1.34783 * 119.99841 * 180.02562 * 13 12 2 15 15 O 1.21585 * 119.99702 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99590 * 179.97438 * 14 13 12 17 17 C 1.48081 * 127.85312 * 0.02562 * 16 14 13 18 18 C 1.54241 * 104.89650 * 140.00514 * 17 16 14 19 19 H 1.09009 * 113.03605 * 260.41235 * 18 17 16 20 20 C 1.56099 * 107.90065 * 133.82822 * 18 17 16 21 21 H 1.09005 * 116.23184 * 86.26275 * 20 18 17 22 22 C 1.53343 * 104.15630 * 316.10193 * 20 18 17 23 23 C 1.35349 * 108.35950 * 289.55016 * 22 20 18 24 24 C 1.53343 * 108.00405 * 0.51862 * 23 22 20 25 25 H 1.09004 * 116.93338 * 199.10777 * 24 23 22 26 26 C 1.57222 * 100.49173 * 213.03760 * 20 18 17 27 27 C 1.56072 * 104.53251 * 24.03111 * 18 17 16 28 28 C 1.53000 * 113.19574 * 236.49601 * 27 18 17 29 29 C 1.48077 * 127.84617 * 180.02562 * 16 14 13 30 30 H 1.08997 * 109.46922 * 309.37215 * 1 2 3 31 31 H 1.09002 * 109.46904 * 69.36973 * 1 2 3 32 32 H 1.08996 * 109.47096 * 189.36831 * 1 2 3 33 33 H 1.08998 * 109.47407 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47035 * 300.00182 * 3 2 1 35 35 H 1.09006 * 109.46857 * 59.99675 * 3 2 1 36 36 H 0.97007 * 119.99766 * 179.97438 * 7 6 4 37 37 H 1.09004 * 109.47498 * 179.97438 * 12 2 1 38 38 H 1.09001 * 109.47037 * 59.99609 * 12 2 1 39 39 H 0.96992 * 120.00119 * 359.97438 * 13 12 2 40 40 H 1.08999 * 110.37111 * 258.88990 * 17 16 14 41 41 H 1.09000 * 110.36999 * 21.11632 * 17 16 14 42 42 H 1.07997 * 125.79362 * 109.73770 * 22 20 18 43 43 H 1.07998 * 126.19306 * 179.62555 * 23 22 20 44 44 H 1.09002 * 112.51955 * 173.22941 * 26 20 18 45 45 H 1.08999 * 112.52100 * 300.99749 * 26 20 18 46 46 H 1.08998 * 109.46918 * 179.81581 * 28 27 18 47 47 H 1.09007 * 109.46822 * 299.80990 * 28 27 18 48 48 H 1.08990 * 109.47388 * 59.81233 * 28 27 18 49 49 H 1.08994 * 110.38133 * 338.79545 * 29 16 14 50 50 H 1.09001 * 110.37714 * 101.02632 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6352 -1.6011 -1.1315 6 6 1.7223 -0.2234 -2.4825 7 7 1.9159 -0.9726 -3.5459 8 14 1.0277 1.5006 -2.6684 9 1 2.1418 2.4816 -2.7083 10 1 0.2471 1.5864 -3.9288 11 1 0.1419 1.8042 -1.5159 12 6 2.0400 -0.7212 1.2492 13 7 1.5516 -0.0306 2.4454 14 6 1.8776 -0.4908 3.6696 15 8 2.5767 -1.4794 3.7811 16 7 1.4287 0.1448 4.7700 17 6 0.5742 1.3524 4.8367 18 6 -0.4062 1.0807 5.9960 19 1 -1.3844 0.7398 5.6564 20 6 -0.4630 2.3615 6.8865 21 1 -1.1741 3.1293 6.5814 22 6 1.0034 2.7883 7.0236 23 6 1.6375 1.8882 7.8108 24 6 0.6200 0.8164 8.2199 25 1 0.8661 0.2087 9.0907 26 6 -0.6887 1.7162 8.3023 27 6 0.3307 0.0406 6.8966 28 6 -0.4733 -1.2424 7.1170 29 6 1.6779 -0.2058 6.1869 30 1 -0.3633 0.6519 0.7944 31 1 -0.3633 0.3621 -0.9618 32 1 -0.3633 -1.0139 0.1673 33 1 3.1301 1.4425 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6974 -0.6301 -4.4268 37 1 3.1300 -0.7217 1.2491 38 1 1.6766 -1.7489 1.2493 39 1 0.9942 0.7581 2.3564 40 1 1.1790 2.2338 5.0499 41 1 0.0294 1.4838 3.9019 42 1 1.4524 3.6603 6.5716 43 1 2.6803 1.9089 8.0910 44 1 -0.6416 2.4493 9.1076 45 1 -1.5973 1.1158 8.3474 46 1 0.0965 -1.9242 7.7483 47 1 -1.4179 -1.0000 7.6040 48 1 -0.6712 -1.7168 6.1559 49 1 1.9665 -1.2532 6.2737 50 1 2.4525 0.4364 6.6062 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459242521.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:32 Heat of formation + Delta-G solvation = 17.570053 kcal Electronic energy + Delta-G solvation = -28288.520706 eV Core-core repulsion = 24702.770064 eV Total energy + Delta-G solvation = -3585.750642 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.74131 -40.73133 -38.50108 -36.54159 -35.02214 -33.64021 -32.99547 -31.47299 -29.41581 -28.08697 -27.95561 -27.23912 -26.90514 -26.28331 -24.00193 -21.45951 -21.03337 -20.95416 -20.65461 -19.13350 -18.34794 -18.08381 -17.35402 -17.20995 -16.98956 -16.65244 -16.09945 -15.57596 -15.03016 -14.99314 -14.76237 -14.63555 -14.44601 -14.21589 -14.01467 -13.77142 -13.67724 -13.40990 -13.22927 -13.00398 -12.94102 -12.50494 -12.40349 -12.23975 -12.15831 -12.01360 -11.97194 -11.87525 -11.79188 -11.47791 -11.38328 -11.21209 -11.06710 -11.06071 -10.62904 -10.41514 -10.26970 -9.81988 -9.13623 -8.30828 -6.33016 1.25444 1.36063 1.37546 1.50874 1.59626 2.13311 2.34353 3.01676 3.05754 3.34412 3.45523 3.62402 4.01010 4.06216 4.07618 4.12679 4.20273 4.26794 4.30050 4.32354 4.38301 4.46575 4.57490 4.61617 4.67117 4.73496 4.79397 4.81408 4.83332 4.84976 4.90990 4.93547 5.01134 5.02946 5.07797 5.11205 5.15435 5.21172 5.26295 5.30770 5.37367 5.40241 5.41012 5.52864 5.60320 5.71269 5.77696 6.07031 6.09867 6.30336 6.70902 7.01694 7.31647 7.57154 8.86550 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.024465 B = 0.003205 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.208365 B = 8734.019216 C = 9187.054759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.030 3.970 3 C -0.144 4.144 4 C -0.520 4.520 5 H 0.026 0.974 6 C 0.017 3.983 7 N -0.946 5.946 8 Si 0.946 3.054 9 H -0.281 1.281 10 H -0.313 1.313 11 H -0.204 1.204 12 C 0.178 3.822 13 N -0.724 5.724 14 C 0.716 3.284 15 O -0.644 6.644 16 N -0.639 5.639 17 C 0.096 3.904 18 C -0.091 4.091 19 H 0.101 0.899 20 C -0.062 4.062 21 H 0.121 0.879 22 C -0.171 4.171 23 C -0.179 4.179 24 C -0.063 4.063 25 H 0.112 0.888 26 C -0.110 4.110 27 C -0.068 4.068 28 C -0.126 4.126 29 C 0.125 3.875 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.039 0.961 33 H 0.045 0.955 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.265 0.735 37 H 0.037 0.963 38 H 0.035 0.965 39 H 0.405 0.595 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.135 0.865 43 H 0.130 0.870 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.060 0.940 47 H 0.079 0.921 48 H 0.036 0.964 49 H 0.052 0.948 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.443 12.481 27.968 32.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.028 3.972 3 C -0.201 4.201 4 C -0.559 4.559 5 H 0.045 0.955 6 C -0.180 4.180 7 N -0.585 5.585 8 Si 0.775 3.225 9 H -0.208 1.208 10 H -0.243 1.243 11 H -0.127 1.127 12 C 0.053 3.947 13 N -0.380 5.380 14 C 0.418 3.582 15 O -0.526 6.526 16 N -0.376 5.376 17 C -0.025 4.025 18 C -0.110 4.110 19 H 0.119 0.881 20 C -0.081 4.081 21 H 0.139 0.861 22 C -0.189 4.189 23 C -0.196 4.196 24 C -0.081 4.081 25 H 0.130 0.870 26 C -0.147 4.147 27 C -0.069 4.069 28 C -0.183 4.183 29 C 0.002 3.998 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.243 0.757 40 H 0.110 0.890 41 H 0.095 0.905 42 H 0.153 0.847 43 H 0.148 0.852 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.079 0.921 47 H 0.098 0.902 48 H 0.055 0.945 49 H 0.071 0.929 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.891 11.666 27.736 31.375 hybrid contribution 0.401 0.158 -1.262 1.334 sum -8.490 11.824 26.473 30.211 Atomic orbital electron populations 1.22187 0.95966 1.00493 1.00832 1.18641 0.93851 0.93127 0.91535 1.22267 1.00944 0.96723 1.00160 1.21015 1.33105 1.11152 0.90589 0.95534 1.25878 0.95316 1.01769 0.95080 1.70117 1.50607 1.38365 0.99443 0.86302 0.79452 0.79686 0.77039 1.20785 1.24260 1.12736 1.20892 0.96934 0.94530 0.82322 1.45102 1.56069 1.33344 1.03507 1.15626 0.79958 0.82039 0.80559 1.90863 1.45496 1.29973 1.86312 1.48028 1.54177 1.30806 1.04571 1.22892 0.92315 0.87407 0.99921 1.23397 0.98263 0.95534 0.93844 0.88086 1.22918 0.94763 0.95317 0.95052 0.86122 1.25028 0.96240 0.99066 0.98571 1.25006 0.99036 0.95739 0.99846 1.23272 0.94717 0.94572 0.95587 0.86956 1.24347 0.96786 0.97572 0.96037 1.22687 0.93429 0.95624 0.95150 1.21590 1.00333 0.95342 1.01028 1.22634 0.97959 1.00461 0.78744 0.91863 0.93360 0.94228 0.93567 0.94427 0.91125 0.92592 0.94407 0.94633 0.75746 0.88966 0.90488 0.84740 0.85223 0.89962 0.89980 0.92057 0.90210 0.94478 0.92930 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.33 7.53 71.98 0.54 -4.79 16 2 C 0.03 1.30 0.50 -52.93 -0.03 1.27 16 3 C -0.14 -5.52 7.52 71.98 0.54 -4.98 16 4 C -0.52 -29.38 8.62 25.60 0.22 -29.16 16 5 H 0.03 1.70 7.99 -2.91 -0.02 1.68 16 6 C 0.02 0.97 5.32 84.66 0.45 1.42 16 7 N -0.95 -59.30 13.96 21.45 0.30 -59.00 16 8 Si 0.95 42.83 22.79 68.60 1.56 44.40 16 9 H -0.28 -12.43 7.10 99.48 0.71 -11.72 16 10 H -0.31 -14.55 7.11 99.48 0.71 -13.84 16 11 H -0.20 -7.74 4.65 99.48 0.46 -7.27 16 12 C 0.18 7.61 4.49 86.38 0.39 8.00 16 13 N -0.72 -24.87 4.98 -478.52 -2.38 -27.26 16 14 C 0.72 26.10 8.57 179.05 1.53 27.63 16 15 O -0.64 -29.79 16.60 -3.98 -0.07 -29.86 16 16 N -0.64 -17.01 3.31 -826.81 -2.74 -19.75 16 17 C 0.10 1.73 6.09 86.50 0.53 2.25 16 18 C -0.09 -1.25 3.65 -8.23 -0.03 -1.28 16 19 H 0.10 1.33 8.00 -2.38 -0.02 1.31 16 20 C -0.06 -0.59 4.98 -8.12 -0.04 -0.63 16 21 H 0.12 0.80 8.14 -2.38 -0.02 0.78 16 22 C -0.17 -1.93 7.65 25.88 0.20 -1.73 16 23 C -0.18 -2.20 7.69 25.88 0.20 -2.00 16 24 C -0.06 -0.71 4.62 -7.43 -0.03 -0.75 16 25 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 26 C -0.11 -0.95 6.65 34.25 0.23 -0.72 16 27 C -0.07 -1.05 0.81 -49.61 -0.04 -1.09 16 28 C -0.13 -1.94 8.92 71.98 0.64 -1.30 16 29 C 0.12 2.84 5.87 86.50 0.51 3.35 16 30 H 0.06 1.91 7.13 -2.39 -0.02 1.89 16 31 H 0.05 1.95 4.30 -2.39 -0.01 1.94 16 32 H 0.04 1.58 8.12 -2.39 -0.02 1.56 16 33 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.04 1.48 2.25 -2.39 -0.01 1.47 16 35 H 0.07 2.10 6.86 -2.38 -0.02 2.09 16 36 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 37 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.40 11.32 4.65 -92.71 -0.43 10.89 16 40 H 0.09 1.47 5.55 -2.39 -0.01 1.46 16 41 H 0.08 1.28 6.85 -2.39 -0.02 1.27 16 42 H 0.13 1.33 8.01 -2.91 -0.02 1.30 16 43 H 0.13 1.53 8.01 -2.91 -0.02 1.51 16 44 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.08 0.61 7.57 -2.39 -0.02 0.59 16 46 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16 47 H 0.08 0.90 7.58 -2.38 -0.02 0.88 16 48 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.05 1.46 7.65 -2.39 -0.02 1.44 16 50 H 0.08 1.77 5.54 -2.39 -0.01 1.76 16 Total: -1.00 -74.40 359.47 2.75 -71.66 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 0.26 Total: 24.32 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 5.81 Total: -4.50 kcal Atomic # 7 Polarization: -101.19 SS G_CDS: -4.82 Total: -106.01 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.07 Total: -29.86 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 1.56 Total: 44.40 kcal Total: -74.40 2.75 -71.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459242521.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.226 kcal (2) G-P(sol) polarization free energy of solvation -74.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds