Wall clock time and date at job start Tue Mar 31 2020 12:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86797 * 120.00421 * 2 1 4 4 H 1.48501 * 109.47068 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47113 * 299.99512 * 3 2 1 6 6 H 1.48494 * 109.47206 * 60.00002 * 3 2 1 7 7 C 1.38820 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00042 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99779 * 0.02562 * 7 2 1 10 10 C 1.48160 * 126.40276 * 359.97438 * 9 7 2 11 11 C 1.55288 * 107.03999 * 175.07794 * 10 9 7 12 12 C 1.53739 * 101.84478 * 337.51799 * 11 10 9 13 13 H 1.08997 * 111.98512 * 280.76091 * 12 11 10 14 14 C 1.52205 * 114.75667 * 152.76970 * 12 11 10 15 15 N 1.47715 * 106.38421 * 190.43124 * 14 12 11 16 16 C 1.34775 * 119.68127 * 232.04936 * 15 14 12 17 17 O 1.21283 * 120.00197 * 354.24931 * 16 15 14 18 18 C 1.50700 * 119.99994 * 174.24895 * 16 15 14 19 19 C 1.52998 * 109.47225 * 94.23270 * 18 16 15 20 20 C 1.52994 * 117.50182 * 248.62291 * 19 18 16 21 21 C 1.52993 * 60.00261 * 252.50959 * 20 19 18 22 22 C 1.52998 * 109.47386 * 214.23090 * 18 16 15 23 23 C 1.52997 * 117.49960 * 133.68421 * 22 18 16 24 24 C 1.52995 * 60.00389 * 252.51613 * 23 22 18 25 25 C 1.46596 * 120.63535 * 52.03074 * 15 14 12 26 26 C 1.53949 * 110.57778 * 312.19873 * 25 15 14 27 27 C 1.45463 * 126.40682 * 179.97438 * 9 7 2 28 28 H 1.08993 * 109.26862 * 94.43972 * 27 9 7 29 29 H 0.97006 * 119.99527 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.92217 * 294.42158 * 10 9 7 31 31 H 1.08999 * 109.92012 * 55.72908 * 10 9 7 32 32 H 1.09010 * 110.95813 * 95.65526 * 11 10 9 33 33 H 1.08998 * 110.95949 * 219.37975 * 11 10 9 34 34 H 1.08998 * 110.06051 * 71.20966 * 14 12 11 35 35 H 1.09004 * 110.14367 * 309.69552 * 14 12 11 36 36 H 1.08997 * 109.47438 * 334.23236 * 18 16 15 37 37 H 1.09007 * 115.54919 * 34.33260 * 19 18 16 38 38 H 1.09009 * 117.49992 * 0.02562 * 20 19 18 39 39 H 1.08999 * 117.50226 * 145.01595 * 20 19 18 40 40 H 1.09005 * 117.49777 * 252.51153 * 21 20 19 41 41 H 1.09004 * 117.52171 * 107.47819 * 21 20 19 42 42 H 1.08997 * 115.55433 * 279.39809 * 22 18 16 43 43 H 1.09003 * 117.50067 * 0.02562 * 23 22 18 44 44 H 1.09000 * 117.50030 * 145.02441 * 23 22 18 45 45 H 1.09003 * 117.50202 * 252.51277 * 24 23 22 46 46 H 1.08999 * 117.52274 * 107.47997 * 24 23 22 47 47 H 1.09002 * 109.25594 * 191.91610 * 25 15 14 48 48 H 1.09005 * 109.25499 * 72.48173 * 25 15 14 49 49 H 1.09002 * 109.88306 * 291.59531 * 26 25 15 50 50 H 1.08998 * 109.88343 * 170.50926 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1470 -2.5533 0.0005 11 6 -0.4343 -4.0740 -0.1269 12 6 0.8680 -4.5892 -0.7609 13 1 0.9010 -4.4024 -1.8343 14 6 1.2005 -6.0404 -0.4444 15 7 2.5821 -6.2639 -0.9169 16 6 2.8484 -7.3030 -1.7330 17 8 1.9797 -8.1086 -1.9923 18 6 4.2256 -7.4638 -2.3232 19 6 5.0541 -8.3970 -1.4380 20 6 6.2244 -7.7843 -0.6662 21 6 6.4923 -8.6889 -1.8707 22 6 4.1122 -8.0604 -3.7275 23 6 4.9360 -7.4094 -4.8403 24 6 3.4187 -7.2172 -4.7994 25 6 3.6662 -5.3663 -0.5071 26 6 3.2475 -3.8956 -0.6852 27 6 1.9075 -3.7212 0.0005 28 1 1.9785 -4.0827 1.0263 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5633 -2.1736 0.9336 31 1 -0.5803 -2.0212 -0.8463 32 1 -0.5953 -4.5238 0.8530 33 1 -1.2858 -4.2563 -0.7825 34 1 0.5136 -6.7043 -0.9692 35 1 1.1400 -6.2136 0.6301 36 1 4.7124 -6.4902 -2.3803 37 1 4.5000 -9.2029 -0.9565 38 1 6.4039 -6.7161 -0.7887 39 1 6.4405 -8.1867 0.3234 40 1 6.8846 -9.6866 -1.6734 41 1 6.8482 -8.2163 -2.7862 42 1 3.9739 -9.1408 -3.7696 43 1 5.5591 -6.5562 -4.5719 44 1 5.3400 -8.0614 -5.6147 45 1 2.8244 -7.7428 -5.5468 46 1 3.0429 -6.2376 -4.5040 47 1 4.5476 -5.5654 -1.1167 48 1 3.9061 -5.5474 0.5407 49 1 3.1541 -3.6626 -1.7459 50 1 3.9875 -3.2411 -0.2247 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036864021.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:16 Heat of formation + Delta-G solvation = 45.961813 kcal Electronic energy + Delta-G solvation = -28302.570795 eV Core-core repulsion = 24718.051312 eV Total energy + Delta-G solvation = -3584.519483 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.61934 -38.84162 -37.47629 -36.35876 -35.30718 -32.73400 -31.54900 -30.31233 -29.03632 -27.87737 -24.90868 -23.60042 -22.84073 -22.47927 -22.26843 -21.60753 -20.95373 -20.04801 -19.51104 -18.73045 -17.35650 -16.33018 -16.10637 -15.92262 -15.24498 -14.92704 -14.78851 -14.40747 -14.15930 -13.98149 -13.89131 -13.54602 -13.02048 -12.77366 -12.63865 -12.46855 -11.89201 -11.76011 -11.70979 -11.63164 -11.59496 -11.41512 -11.40138 -10.87335 -10.82773 -10.77001 -10.68505 -10.48981 -10.43073 -10.13781 -10.08006 -10.01458 -9.89022 -9.64437 -9.47958 -9.32852 -8.64340 -8.45247 -6.85067 -5.73277 -3.06420 2.72029 3.04178 3.37763 3.42814 3.45647 3.52041 3.74488 4.31283 4.47081 4.51418 4.58884 4.78278 4.81906 4.83679 4.93157 5.01357 5.14105 5.17895 5.25883 5.29058 5.35780 5.43255 5.51667 5.51847 5.56467 5.61303 5.63437 5.68343 5.80317 5.80784 5.89707 5.90465 5.95495 6.00359 6.04408 6.13435 6.17933 6.18864 6.23648 6.36364 6.51055 6.61191 6.63464 6.85023 7.05787 7.53754 7.55446 7.60937 7.79774 8.22728 8.31590 9.17696 9.81424 10.49690 11.39297 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.016593 B = 0.003567 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.071589 B = 7848.411740 C = 8317.705002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.225 4.225 8 H 0.079 0.921 9 N -0.595 5.595 10 C 0.177 3.823 11 C -0.136 4.136 12 C -0.124 4.124 13 H 0.078 0.922 14 C 0.127 3.873 15 N -0.605 5.605 16 C 0.523 3.477 17 O -0.544 6.544 18 C -0.049 4.049 19 C -0.140 4.140 20 C -0.179 4.179 21 C -0.168 4.168 22 C -0.125 4.125 23 C -0.178 4.178 24 C -0.174 4.174 25 C 0.109 3.891 26 C -0.130 4.130 27 C 0.168 3.832 28 H 0.019 0.981 29 H 0.251 0.749 30 H 0.038 0.962 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.110 0.890 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.092 0.908 47 H 0.080 0.920 48 H 0.066 0.934 49 H 0.066 0.934 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.680 -16.302 -4.287 19.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.053 3.947 11 C -0.174 4.174 12 C -0.144 4.144 13 H 0.096 0.904 14 C 0.005 3.995 15 N -0.338 5.338 16 C 0.311 3.689 17 O -0.421 6.421 18 C -0.070 4.070 19 C -0.159 4.159 20 C -0.215 4.215 21 C -0.205 4.205 22 C -0.144 4.144 23 C -0.215 4.215 24 C -0.211 4.211 25 C -0.014 4.014 26 C -0.170 4.170 27 C 0.060 3.940 28 H 0.036 0.964 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.126 0.874 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.128 0.872 43 H 0.111 0.889 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.111 0.889 47 H 0.098 0.902 48 H 0.084 0.916 49 H 0.085 0.915 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.167 -16.458 -4.391 19.837 hybrid contribution 0.426 1.083 0.070 1.166 sum 10.593 -15.374 -4.321 19.164 Atomic orbital electron populations 1.69951 1.04897 1.24908 1.57049 1.24792 0.95669 0.97623 1.02347 0.86087 0.78697 0.83986 0.77247 1.20542 1.21810 1.21786 1.19035 0.90358 0.82311 1.43660 0.90353 1.44217 1.01671 0.99473 1.86577 1.21527 0.83918 0.88309 1.00936 1.22704 0.95780 0.99652 0.99307 1.22633 0.97862 0.93392 1.00551 0.90357 1.21590 0.81782 0.96971 0.99180 1.48309 1.09641 1.27758 1.48081 1.20406 0.89714 0.80735 0.78068 1.90653 1.48257 1.42468 1.60712 1.20565 0.93411 0.99379 0.93637 1.21984 0.90112 1.01618 1.02177 1.23103 1.02194 0.99571 0.96677 1.22922 0.97626 1.00938 0.99045 1.21864 1.05092 0.99093 0.88353 1.23044 0.94295 1.03056 1.01131 1.22915 0.94679 1.01695 1.01812 1.21892 0.89019 0.90281 1.00233 1.21903 0.99489 0.93630 1.01931 1.20618 0.91088 0.87189 0.95127 0.96365 0.93810 0.94385 0.92734 0.92323 0.92079 0.89412 0.91504 0.88825 0.87436 0.88474 0.88571 0.88768 0.88413 0.87219 0.88873 0.88718 0.88673 0.88905 0.90186 0.91593 0.91479 0.90567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.74 10.44 55.49 0.58 -26.16 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.23 -6.05 9.88 -15.05 -0.15 -6.20 16 8 H 0.08 2.01 7.21 -52.49 -0.38 1.63 16 9 N -0.59 -14.66 3.35 -163.09 -0.55 -15.21 16 10 C 0.18 4.25 5.45 -1.92 -0.01 4.24 16 11 C -0.14 -2.52 6.54 -25.13 -0.16 -2.68 16 12 C -0.12 -2.20 2.86 -89.39 -0.26 -2.46 16 13 H 0.08 1.51 8.11 -51.93 -0.42 1.08 16 14 C 0.13 1.97 5.93 -3.78 -0.02 1.95 16 15 N -0.61 -8.72 3.00 -172.51 -0.52 -9.24 16 16 C 0.52 7.59 6.42 -10.99 -0.07 7.52 16 17 O -0.54 -9.60 15.83 5.55 0.09 -9.51 16 18 C -0.05 -0.54 1.77 -91.77 -0.16 -0.70 16 19 C -0.14 -1.35 5.13 -90.62 -0.47 -1.81 16 20 C -0.18 -1.43 9.97 -26.74 -0.27 -1.70 16 21 C -0.17 -1.29 9.88 -26.73 -0.26 -1.55 16 22 C -0.13 -1.35 4.24 -90.62 -0.38 -1.74 16 23 C -0.18 -1.60 10.18 -26.73 -0.27 -1.87 16 24 C -0.17 -1.93 10.00 -26.73 -0.27 -2.20 16 25 C 0.11 1.41 6.23 -3.49 -0.02 1.39 16 26 C -0.13 -2.14 5.48 -26.98 -0.15 -2.29 16 27 C 0.17 3.30 2.58 -67.98 -0.18 3.12 16 28 H 0.02 0.38 7.90 -51.93 -0.41 -0.03 16 29 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 30 H 0.04 1.00 7.77 -51.93 -0.40 0.59 16 31 H 0.05 1.45 7.21 -51.93 -0.37 1.08 16 32 H 0.06 1.01 8.12 -51.92 -0.42 0.59 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.09 1.41 7.04 -51.93 -0.37 1.05 16 35 H 0.07 0.99 8.07 -51.93 -0.42 0.57 16 36 H 0.09 0.97 5.39 -51.93 -0.28 0.69 16 37 H 0.11 1.15 8.11 -51.93 -0.42 0.73 16 38 H 0.10 0.74 7.38 -51.92 -0.38 0.36 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.09 0.78 8.08 -51.93 -0.42 0.36 16 44 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.08 0.86 4.29 -51.93 -0.22 0.63 16 48 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 49 H 0.07 1.17 8.11 -51.93 -0.42 0.74 16 50 H 0.08 1.26 7.62 -51.93 -0.40 0.86 16 LS Contribution 383.53 15.07 5.78 5.78 Total: -1.00 -30.79 383.53 -11.51 -42.31 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -8.68 Total: 2.64 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -3.19 Total: -7.31 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: -0.48 Total: -50.61 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.79 -11.51 -42.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036864021.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.269 kcal (2) G-P(sol) polarization free energy of solvation -30.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds