Wall clock time and date at job start Tue Mar 31 2020 12:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.29253 * 117.81969 * 2 1 4 4 C 1.50062 * 124.01832 * 180.60641 * 3 2 1 5 5 C 1.53016 * 110.14831 * 342.73050 * 4 3 2 6 6 C 1.53006 * 109.81760 * 169.22482 * 5 4 3 7 7 C 1.50698 * 109.64367 * 289.75360 * 5 4 3 8 8 O 1.21278 * 119.99927 * 353.09351 * 7 5 4 9 9 N 1.34780 * 120.00106 * 173.09633 * 7 5 4 10 10 C 1.47357 * 135.87642 * 359.62646 * 9 7 5 11 11 C 1.52224 * 87.48369 * 154.25519 * 10 9 7 12 12 C 1.47351 * 135.87905 * 180.02562 * 9 7 5 13 13 C 1.53721 * 116.41083 * 142.35315 * 11 10 9 14 14 C 1.55182 * 101.38271 * 165.06970 * 13 11 10 15 15 N 1.47548 * 105.03547 * 324.50587 * 14 13 11 16 16 C 1.36931 * 125.66344 * 203.86387 * 15 14 13 17 17 H 1.07995 * 120.00267 * 180.02562 * 16 15 14 18 18 C 1.38819 * 119.99605 * 0.03988 * 16 15 14 19 19 N 1.31617 * 120.00118 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99688 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47071 * 90.00117 * 20 18 16 22 22 H 1.48506 * 109.46830 * 209.99612 * 20 18 16 23 23 H 1.48494 * 109.47266 * 330.00032 * 20 18 16 24 24 C 1.47400 * 108.67955 * 23.89768 * 15 14 13 25 25 C 1.53392 * 108.43958 * 49.44204 * 5 4 3 26 26 C 1.50072 * 117.96303 * 179.87540 * 2 1 3 27 27 H 1.09005 * 109.47068 * 270.12151 * 1 2 3 28 28 H 1.08990 * 109.47249 * 30.12079 * 1 2 3 29 29 H 1.08999 * 109.47385 * 150.12573 * 1 2 3 30 30 H 1.08004 * 118.01710 * 0.44232 * 3 2 1 31 31 H 1.09001 * 109.35659 * 222.52029 * 4 3 2 32 32 H 1.08999 * 109.35938 * 102.94269 * 4 3 2 33 33 H 1.08999 * 109.47355 * 300.95152 * 6 5 4 34 34 H 1.09003 * 109.47173 * 60.95149 * 6 5 4 35 35 H 1.09002 * 109.46901 * 180.95212 * 6 5 4 36 36 H 1.08998 * 113.53433 * 268.88444 * 10 9 7 37 37 H 1.08997 * 113.53139 * 39.53418 * 10 9 7 38 38 H 1.09002 * 113.53410 * 320.45986 * 12 9 7 39 39 H 1.09000 * 113.53513 * 91.11346 * 12 9 7 40 40 H 1.09006 * 111.03887 * 283.09529 * 13 11 10 41 41 H 1.08997 * 111.04064 * 47.04178 * 13 11 10 42 42 H 1.09004 * 110.32452 * 205.61507 * 14 13 11 43 43 H 1.08999 * 110.33109 * 83.40108 * 14 13 11 44 44 H 0.96995 * 120.00035 * 180.02562 * 19 18 16 45 45 H 1.09003 * 109.99042 * 238.51955 * 24 15 14 46 46 H 1.08995 * 110.03101 * 117.21487 * 24 15 14 47 47 H 1.08993 * 109.64378 * 172.88190 * 25 5 4 48 48 H 1.08995 * 109.64563 * 52.24240 * 25 5 4 49 49 H 1.08998 * 109.35645 * 42.64111 * 26 2 1 50 50 H 1.09000 * 109.35694 * 282.91765 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1102 1.1431 0.0000 4 6 3.6020 1.3052 -0.0132 5 6 4.2780 -0.0037 0.4005 6 6 5.7816 0.0809 0.1298 7 6 4.0408 -0.2549 1.8674 8 8 3.5032 0.5925 2.5485 9 7 4.4261 -1.4211 2.4223 10 6 5.0783 -2.6541 1.9473 11 6 5.5776 -2.8585 3.3708 12 6 4.3723 -2.0215 3.7669 13 6 5.6055 -4.3072 3.8842 14 6 6.5021 -4.1687 5.1431 15 7 7.5072 -3.1489 4.7869 16 6 8.7449 -3.0145 5.3570 17 1 9.4104 -2.2315 5.0248 18 6 9.1444 -3.8851 6.3618 19 7 8.3337 -4.8399 6.7661 20 14 10.8326 -3.7014 7.1401 21 1 10.7425 -2.7890 8.3083 22 1 11.3189 -5.0314 7.5871 23 1 11.7784 -3.1377 6.1436 24 6 6.9575 -2.2982 3.7161 25 6 3.6694 -1.1456 -0.4232 26 6 2.2107 -1.3255 0.0029 27 1 -0.3633 0.0022 1.0277 28 1 -0.3633 0.8888 -0.5157 29 1 -0.3634 -0.8911 -0.5119 30 1 1.5037 2.0368 0.0074 31 1 3.8858 2.0943 0.6832 32 1 3.9269 1.5782 -1.0172 33 1 5.9499 0.2700 -0.9303 34 1 6.2112 0.8930 0.7164 35 1 6.2548 -0.8600 0.4107 36 1 4.3752 -3.4195 1.6187 37 1 5.8758 -2.4746 1.2264 38 1 4.5791 -1.3126 4.5687 39 1 3.4727 -2.6108 3.9448 40 1 4.6049 -4.6469 4.1518 41 1 6.0602 -4.9735 3.1512 42 1 6.9888 -5.1179 5.3676 43 1 5.9098 -3.8353 5.9952 44 1 8.6127 -5.4479 7.4685 45 1 7.6052 -2.3365 2.8402 46 1 6.8653 -1.2701 4.0663 47 1 4.2217 -2.0666 -0.2369 48 1 3.7133 -0.8964 -1.4834 49 1 1.7119 -2.0008 -0.6923 50 1 2.1770 -1.7502 1.0062 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073450708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:45 Heat of formation + Delta-G solvation = 36.379599 kcal Electronic energy + Delta-G solvation = -28306.853606 eV Core-core repulsion = 24721.918607 eV Total energy + Delta-G solvation = -3584.934999 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.15588 -39.52378 -37.22127 -35.65600 -34.19030 -32.22904 -31.03596 -29.71662 -28.97941 -28.22471 -26.08518 -25.88999 -24.90649 -23.84144 -23.40697 -22.02135 -20.36057 -19.20455 -18.32292 -17.55385 -16.92646 -16.23218 -15.83480 -15.36696 -15.22100 -14.80499 -14.56710 -14.36305 -14.23952 -13.74454 -13.61228 -13.28836 -13.20408 -12.82415 -12.71189 -12.55079 -12.44354 -12.17775 -12.07226 -12.00304 -11.94344 -11.75297 -11.54671 -11.44169 -11.08572 -10.96956 -10.79183 -10.55959 -10.46757 -10.32126 -10.09555 -9.97841 -9.77641 -9.67126 -9.28553 -8.78257 -8.66052 -8.46770 -6.85430 -5.66694 -3.08135 2.21826 2.82257 2.98123 3.39732 3.44875 3.46445 4.31576 4.37337 4.45987 4.51187 4.60969 4.83183 4.87345 5.00544 5.06877 5.16470 5.23089 5.27779 5.39773 5.43210 5.46393 5.48754 5.49591 5.55190 5.58716 5.63375 5.66274 5.70061 5.72129 5.74853 5.79634 5.87463 5.94158 5.98479 6.01440 6.04967 6.14237 6.18791 6.26230 6.50652 6.55738 6.58650 6.70113 6.75224 6.95804 7.49253 7.60982 7.83397 7.94105 8.33924 8.35578 9.20659 9.81040 10.45798 11.37313 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.027006 B = 0.003072 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.570059 B = 9112.843644 C = 9495.582387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.135 4.135 3 C -0.141 4.141 4 C -0.067 4.067 5 C -0.074 4.074 6 C -0.142 4.142 7 C 0.555 3.445 8 O -0.541 6.541 9 N -0.640 5.640 10 C 0.111 3.889 11 C -0.103 4.103 12 C 0.121 3.879 13 C -0.129 4.129 14 C 0.154 3.846 15 N -0.604 5.604 16 C -0.221 4.221 17 H 0.077 0.923 18 C -0.011 4.011 19 N -0.922 5.922 20 Si 0.914 3.086 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.166 3.834 25 C -0.108 4.108 26 C -0.085 4.085 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.107 0.893 43 H 0.013 0.987 44 H 0.252 0.748 45 H 0.028 0.972 46 H 0.024 0.976 47 H 0.074 0.926 48 H 0.074 0.926 49 H 0.073 0.927 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.280 5.271 -17.133 21.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.135 4.135 3 C -0.159 4.159 4 C -0.104 4.104 5 C -0.077 4.077 6 C -0.200 4.200 7 C 0.345 3.655 8 O -0.418 6.418 9 N -0.374 5.374 10 C -0.012 4.012 11 C -0.104 4.104 12 C -0.001 4.001 13 C -0.168 4.168 14 C 0.029 3.971 15 N -0.330 5.330 16 C -0.350 4.350 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.571 5.571 20 Si 0.745 3.255 21 H -0.217 1.217 22 H -0.216 1.216 23 H -0.207 1.207 24 C 0.040 3.960 25 C -0.146 4.146 26 C -0.122 4.122 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.120 0.880 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.124 0.876 43 H 0.031 0.969 44 H 0.063 0.937 45 H 0.046 0.954 46 H 0.041 0.959 47 H 0.092 0.908 48 H 0.093 0.907 49 H 0.091 0.909 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.505 5.860 -16.702 21.672 hybrid contribution 0.686 0.156 0.537 0.885 sum -11.819 6.017 -16.165 20.909 Atomic orbital electron populations 1.20902 0.92773 1.01879 1.01867 1.20695 0.95629 0.94822 1.02326 1.21708 0.95847 0.97122 1.01182 1.20324 0.92546 0.96141 1.01385 1.20829 0.97400 0.97498 0.91963 1.21871 0.92641 1.03213 1.02258 1.19886 0.76799 0.80056 0.88774 1.90675 1.43119 1.44309 1.63664 1.49736 1.60428 1.14338 1.12947 1.23050 0.95598 0.84882 0.97688 1.22172 0.95955 0.97896 0.94360 1.22825 0.97220 0.94243 0.85849 1.22770 1.00427 0.92803 1.00828 1.21971 0.88434 0.96454 0.90243 1.44606 1.14470 1.33189 1.40758 1.19061 0.89967 1.11922 1.14030 0.90538 1.24773 0.98580 0.98146 0.99116 1.69787 1.35128 1.20072 1.32101 0.86078 0.83344 0.76873 0.79238 1.21651 1.21646 1.20707 1.20712 0.89291 0.93793 0.92159 1.21734 0.95542 0.97657 0.99651 1.20423 0.94742 0.95140 1.01888 0.91890 0.92192 0.92278 0.87997 0.90017 0.90358 0.91465 0.91879 0.91479 0.89772 0.90306 0.90354 0.90113 0.91928 0.91385 0.87563 0.96936 0.93729 0.95432 0.95850 0.90762 0.90684 0.90884 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.09 9.86 36.01 0.36 -0.74 16 2 C -0.13 -1.49 5.64 -100.89 -0.57 -2.06 16 3 C -0.14 -1.61 8.65 -35.86 -0.31 -1.92 16 4 C -0.07 -0.74 4.55 -28.18 -0.13 -0.87 16 5 C -0.07 -0.85 0.57 -155.45 -0.09 -0.94 16 6 C -0.14 -1.47 8.43 37.16 0.31 -1.15 16 7 C 0.56 8.46 4.98 -10.98 -0.05 8.41 16 8 O -0.54 -10.30 16.11 5.56 0.09 -10.21 16 9 N -0.64 -9.26 3.49 -185.47 -0.65 -9.91 16 10 C 0.11 1.38 5.57 -7.46 -0.04 1.34 16 11 C -0.10 -1.65 1.05 -155.11 -0.16 -1.81 16 12 C 0.12 1.89 7.90 -7.58 -0.06 1.83 16 13 C -0.13 -2.20 6.49 -25.20 -0.16 -2.36 16 14 C 0.15 3.56 5.90 -2.31 -0.01 3.55 16 15 N -0.60 -15.08 3.41 -170.38 -0.58 -15.66 16 16 C -0.22 -6.10 10.28 -15.06 -0.15 -6.25 16 17 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 18 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 19 N -0.92 -26.42 10.09 55.49 0.56 -25.86 16 20 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.17 3.37 6.78 -3.61 -0.02 3.35 16 25 C -0.11 -1.04 4.62 -26.51 -0.12 -1.16 16 26 C -0.08 -0.87 5.28 -28.17 -0.15 -1.02 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.49 7.89 -51.93 -0.41 0.08 16 29 H 0.06 0.47 8.03 -51.93 -0.42 0.06 16 30 H 0.10 1.09 7.80 -52.48 -0.41 0.68 16 31 H 0.08 1.03 7.66 -51.93 -0.40 0.63 16 32 H 0.08 0.70 8.11 -51.93 -0.42 0.28 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.70 5.90 -51.93 -0.31 0.40 16 36 H 0.08 0.88 8.12 -51.93 -0.42 0.45 16 37 H 0.08 0.91 6.05 -51.93 -0.31 0.59 16 38 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 39 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 40 H 0.06 0.92 7.98 -51.93 -0.41 0.51 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.11 2.79 5.89 -51.93 -0.31 2.48 16 43 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 45 H 0.03 0.55 8.07 -51.93 -0.42 0.13 16 46 H 0.02 0.51 7.92 -51.93 -0.41 0.10 16 47 H 0.07 0.66 6.13 -51.93 -0.32 0.34 16 48 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 49 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 50 H 0.07 0.86 7.31 -51.93 -0.38 0.48 16 LS Contribution 378.04 15.07 5.70 5.70 Total: -1.00 -31.74 378.04 -10.06 -41.80 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -8.68 Total: -0.53 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -1.47 Total: -2.20 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: -0.67 Total: -51.43 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.74 -10.06 -41.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073450708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.175 kcal (2) G-P(sol) polarization free energy of solvation -31.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds