Wall clock time and date at job start Tue Mar 31 2020 12:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.29253 * 117.81969 * 2 1 4 4 C 1.50062 * 124.01832 * 180.60641 * 3 2 1 5 5 C 1.53016 * 110.14831 * 342.73050 * 4 3 2 6 6 C 1.53006 * 109.81760 * 169.22482 * 5 4 3 7 7 C 1.50698 * 109.64367 * 289.75360 * 5 4 3 8 8 O 1.21278 * 119.99927 * 353.09351 * 7 5 4 9 9 N 1.34780 * 120.00106 * 173.09633 * 7 5 4 10 10 C 1.47357 * 135.87642 * 359.62646 * 9 7 5 11 11 C 1.52224 * 87.48369 * 154.25519 * 10 9 7 12 12 C 1.47351 * 135.87905 * 180.02562 * 9 7 5 13 13 C 1.53721 * 116.41083 * 142.35315 * 11 10 9 14 14 C 1.55182 * 101.38271 * 165.06970 * 13 11 10 15 15 N 1.47548 * 105.03547 * 324.50587 * 14 13 11 16 16 C 1.36931 * 125.66344 * 203.86387 * 15 14 13 17 17 H 1.07995 * 120.00267 * 180.02562 * 16 15 14 18 18 C 1.38819 * 119.99605 * 0.03988 * 16 15 14 19 19 N 1.31617 * 120.00118 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99688 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47071 * 90.00117 * 20 18 16 22 22 H 1.48506 * 109.46830 * 209.99612 * 20 18 16 23 23 H 1.48494 * 109.47266 * 330.00032 * 20 18 16 24 24 C 1.47400 * 108.67955 * 23.89768 * 15 14 13 25 25 C 1.53392 * 108.43958 * 49.44204 * 5 4 3 26 26 C 1.50072 * 117.96303 * 179.87540 * 2 1 3 27 27 H 1.09005 * 109.47068 * 270.12151 * 1 2 3 28 28 H 1.08990 * 109.47249 * 30.12079 * 1 2 3 29 29 H 1.08999 * 109.47385 * 150.12573 * 1 2 3 30 30 H 1.08004 * 118.01710 * 0.44232 * 3 2 1 31 31 H 1.09001 * 109.35659 * 222.52029 * 4 3 2 32 32 H 1.08999 * 109.35938 * 102.94269 * 4 3 2 33 33 H 1.08999 * 109.47355 * 300.95152 * 6 5 4 34 34 H 1.09003 * 109.47173 * 60.95149 * 6 5 4 35 35 H 1.09002 * 109.46901 * 180.95212 * 6 5 4 36 36 H 1.08998 * 113.53433 * 268.88444 * 10 9 7 37 37 H 1.08997 * 113.53139 * 39.53418 * 10 9 7 38 38 H 1.09002 * 113.53410 * 320.45986 * 12 9 7 39 39 H 1.09000 * 113.53513 * 91.11346 * 12 9 7 40 40 H 1.09006 * 111.03887 * 283.09529 * 13 11 10 41 41 H 1.08997 * 111.04064 * 47.04178 * 13 11 10 42 42 H 1.09004 * 110.32452 * 205.61507 * 14 13 11 43 43 H 1.08999 * 110.33109 * 83.40108 * 14 13 11 44 44 H 0.96995 * 120.00035 * 180.02562 * 19 18 16 45 45 H 1.09003 * 109.99042 * 238.51955 * 24 15 14 46 46 H 1.08995 * 110.03101 * 117.21487 * 24 15 14 47 47 H 1.08993 * 109.64378 * 172.88190 * 25 5 4 48 48 H 1.08995 * 109.64563 * 52.24240 * 25 5 4 49 49 H 1.08998 * 109.35645 * 42.64111 * 26 2 1 50 50 H 1.09000 * 109.35694 * 282.91765 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1102 1.1431 0.0000 4 6 3.6020 1.3052 -0.0132 5 6 4.2780 -0.0037 0.4005 6 6 5.7816 0.0809 0.1298 7 6 4.0408 -0.2549 1.8674 8 8 3.5032 0.5925 2.5485 9 7 4.4261 -1.4211 2.4223 10 6 5.0783 -2.6541 1.9473 11 6 5.5776 -2.8585 3.3708 12 6 4.3723 -2.0215 3.7669 13 6 5.6055 -4.3072 3.8842 14 6 6.5021 -4.1687 5.1431 15 7 7.5072 -3.1489 4.7869 16 6 8.7449 -3.0145 5.3570 17 1 9.4104 -2.2315 5.0248 18 6 9.1444 -3.8851 6.3618 19 7 8.3337 -4.8399 6.7661 20 14 10.8326 -3.7014 7.1401 21 1 10.7425 -2.7890 8.3083 22 1 11.3189 -5.0314 7.5871 23 1 11.7784 -3.1377 6.1436 24 6 6.9575 -2.2982 3.7161 25 6 3.6694 -1.1456 -0.4232 26 6 2.2107 -1.3255 0.0029 27 1 -0.3633 0.0022 1.0277 28 1 -0.3633 0.8888 -0.5157 29 1 -0.3634 -0.8911 -0.5119 30 1 1.5037 2.0368 0.0074 31 1 3.8858 2.0943 0.6832 32 1 3.9269 1.5782 -1.0172 33 1 5.9499 0.2700 -0.9303 34 1 6.2112 0.8930 0.7164 35 1 6.2548 -0.8600 0.4107 36 1 4.3752 -3.4195 1.6187 37 1 5.8758 -2.4746 1.2264 38 1 4.5791 -1.3126 4.5687 39 1 3.4727 -2.6108 3.9448 40 1 4.6049 -4.6469 4.1518 41 1 6.0602 -4.9735 3.1512 42 1 6.9888 -5.1179 5.3676 43 1 5.9098 -3.8353 5.9952 44 1 8.6127 -5.4479 7.4685 45 1 7.6052 -2.3365 2.8402 46 1 6.8653 -1.2701 4.0663 47 1 4.2217 -2.0666 -0.2369 48 1 3.7133 -0.8964 -1.4834 49 1 1.7119 -2.0008 -0.6923 50 1 2.1770 -1.7502 1.0062 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073450708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:44 Heat of formation + Delta-G solvation = 18.413958 kcal Electronic energy + Delta-G solvation = -28307.632654 eV Core-core repulsion = 24721.918607 eV Total energy + Delta-G solvation = -3585.714047 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.28530 -40.66028 -38.36283 -37.29557 -35.06989 -34.07223 -31.91858 -31.30279 -29.97897 -29.54587 -27.65559 -27.17851 -25.78021 -25.42966 -24.17801 -23.09266 -22.16513 -20.24708 -19.67772 -18.82659 -18.53780 -17.44732 -16.93448 -16.84003 -16.36002 -16.14071 -15.84324 -15.53097 -15.37608 -15.15112 -14.67416 -14.42036 -14.14753 -14.09517 -13.83381 -13.74007 -13.40004 -13.36409 -13.26343 -13.15621 -13.09723 -12.88506 -12.81098 -12.72689 -12.55417 -12.37358 -12.21643 -12.00919 -11.92974 -11.75359 -11.50812 -11.35098 -11.25007 -11.00295 -10.73938 -10.51114 -9.71215 -9.54859 -8.88036 -7.76712 -5.20725 1.39772 1.46567 1.48114 1.56739 1.68995 1.85334 2.49369 3.24484 3.34352 3.42149 3.54895 3.66865 3.71645 3.74956 4.03681 4.09336 4.17078 4.19697 4.27322 4.39038 4.44001 4.49437 4.51859 4.63173 4.66311 4.69085 4.73597 4.74994 4.81020 4.82633 4.86406 4.89389 4.93909 4.97301 5.00563 5.07599 5.11897 5.16806 5.17429 5.22824 5.24729 5.26821 5.31731 5.47019 5.69174 5.78822 5.85197 6.15375 6.33538 6.80776 7.12545 7.19077 7.79065 8.42586 9.24644 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.027006 B = 0.003072 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.570059 B = 9112.843644 C = 9495.582387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.142 4.142 3 C -0.159 4.159 4 C -0.067 4.067 5 C -0.069 4.069 6 C -0.141 4.141 7 C 0.549 3.451 8 O -0.590 6.590 9 N -0.640 5.640 10 C 0.128 3.872 11 C -0.098 4.098 12 C 0.116 3.884 13 C -0.107 4.107 14 C 0.153 3.847 15 N -0.626 5.626 16 C -0.239 4.239 17 H 0.076 0.924 18 C -0.064 4.064 19 N -0.946 5.946 20 Si 0.977 3.023 21 H -0.292 1.292 22 H -0.290 1.290 23 H -0.269 1.269 24 C 0.165 3.835 25 C -0.103 4.103 26 C -0.087 4.087 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.056 0.944 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.044 0.956 35 H 0.068 0.932 36 H 0.123 0.877 37 H 0.098 0.902 38 H 0.043 0.957 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.074 0.926 43 H -0.019 1.019 44 H 0.247 0.753 45 H 0.038 0.962 46 H 0.001 0.999 47 H 0.088 0.912 48 H 0.097 0.903 49 H 0.095 0.905 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.708 4.279 -20.354 24.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.142 4.142 3 C -0.177 4.177 4 C -0.104 4.104 5 C -0.072 4.072 6 C -0.198 4.198 7 C 0.341 3.659 8 O -0.471 6.471 9 N -0.374 5.374 10 C 0.006 3.994 11 C -0.100 4.100 12 C -0.006 4.006 13 C -0.146 4.146 14 C 0.028 3.972 15 N -0.352 5.352 16 C -0.368 4.368 17 H 0.094 0.906 18 C -0.257 4.257 19 N -0.596 5.596 20 Si 0.805 3.195 21 H -0.219 1.219 22 H -0.216 1.216 23 H -0.194 1.194 24 C 0.040 3.960 25 C -0.141 4.141 26 C -0.124 4.124 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.118 0.882 31 H 0.075 0.925 32 H 0.122 0.878 33 H 0.115 0.885 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.141 0.859 37 H 0.116 0.884 38 H 0.062 0.938 39 H 0.123 0.877 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.092 0.908 43 H -0.001 1.001 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.019 0.981 47 H 0.106 0.894 48 H 0.115 0.885 49 H 0.114 0.886 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.929 4.862 -19.960 24.274 hybrid contribution 0.802 0.540 1.616 1.883 sum -12.127 5.402 -18.344 22.644 Atomic orbital electron populations 1.20926 0.91906 1.03099 1.01494 1.20994 0.96576 0.95182 1.01428 1.21841 0.96154 0.97536 1.02196 1.20343 0.92545 0.95403 1.02108 1.20879 0.98420 0.98625 0.89317 1.21891 0.91431 1.02591 1.03873 1.20685 0.75731 0.79296 0.90220 1.90650 1.45435 1.45807 1.65168 1.49784 1.60188 1.14965 1.12439 1.23153 0.96465 0.84495 0.95246 1.21969 0.93585 0.96752 0.97654 1.22853 0.98067 0.93851 0.85868 1.22588 1.00567 0.93678 0.97752 1.21799 0.88595 0.94287 0.92544 1.44923 1.14185 1.34477 1.41644 1.19398 0.91262 1.11782 1.14389 0.90635 1.25573 1.02062 0.98170 0.99879 1.70039 1.36549 1.20642 1.32327 0.85100 0.79567 0.76550 0.78240 1.21890 1.21621 1.19404 1.20798 0.91980 0.92168 0.91021 1.21782 0.94837 0.97129 1.00329 1.20479 0.95513 0.94845 1.01515 0.92976 0.91448 0.90673 0.88163 0.92489 0.87754 0.88507 0.93698 0.91360 0.85890 0.88394 0.93838 0.87703 0.88884 0.89742 0.90792 1.00135 0.94303 0.94370 0.98128 0.89352 0.88461 0.88622 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.99 9.86 71.24 0.70 -1.28 16 2 C -0.14 -2.86 5.64 -14.91 -0.08 -2.95 16 3 C -0.16 -3.49 8.65 27.22 0.24 -3.25 16 4 C -0.07 -1.41 4.55 29.65 0.13 -1.27 16 5 C -0.07 -1.44 0.57 -52.79 -0.03 -1.47 16 6 C -0.14 -2.52 8.43 71.98 0.61 -1.91 16 7 C 0.55 16.27 4.98 87.66 0.44 16.71 16 8 O -0.59 -23.06 16.11 -3.02 -0.05 -23.10 16 9 N -0.64 -17.43 3.49 -859.08 -3.00 -20.43 16 10 C 0.13 2.69 5.57 83.70 0.47 3.15 16 11 C -0.10 -2.98 1.05 -52.56 -0.05 -3.04 16 12 C 0.12 3.56 7.90 83.62 0.66 4.22 16 13 C -0.11 -3.41 6.49 31.59 0.21 -3.21 16 14 C 0.15 7.22 5.90 86.93 0.51 7.73 16 15 N -0.63 -31.93 3.41 -692.96 -2.36 -34.29 16 16 C -0.24 -13.47 10.28 84.04 0.86 -12.61 16 17 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 18 C -0.06 -3.63 5.49 84.86 0.47 -3.17 16 19 N -0.95 -55.83 10.09 21.65 0.22 -55.61 16 20 Si 0.98 45.75 29.55 68.60 2.03 47.77 16 21 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 22 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 24 C 0.17 6.70 6.78 86.17 0.58 7.29 16 25 C -0.10 -1.54 4.62 30.74 0.14 -1.40 16 26 C -0.09 -1.49 5.28 29.66 0.16 -1.33 16 27 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 28 H 0.07 1.01 7.89 -2.39 -0.02 0.99 16 29 H 0.07 1.00 8.03 -2.39 -0.02 0.98 16 30 H 0.10 2.13 7.80 -2.91 -0.02 2.10 16 31 H 0.06 1.46 7.66 -2.39 -0.02 1.45 16 32 H 0.10 1.58 8.11 -2.39 -0.02 1.56 16 33 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 1.20 5.90 -2.39 -0.01 1.18 16 36 H 0.12 1.79 8.12 -2.39 -0.02 1.77 16 37 H 0.10 1.77 6.05 -2.39 -0.01 1.76 16 38 H 0.04 1.62 8.07 -2.39 -0.02 1.60 16 39 H 0.11 2.71 8.04 -2.39 -0.02 2.69 16 40 H 0.09 2.44 7.98 -2.38 -0.02 2.42 16 41 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 42 H 0.07 4.00 5.89 -2.38 -0.01 3.99 16 43 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 44 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 45 H 0.04 1.47 8.07 -2.39 -0.02 1.45 16 46 H 0.00 0.03 7.92 -2.39 -0.02 0.02 16 47 H 0.09 1.08 6.13 -2.39 -0.01 1.07 16 48 H 0.10 1.09 8.12 -2.39 -0.02 1.07 16 49 H 0.10 1.21 8.09 -2.39 -0.02 1.19 16 50 H 0.05 1.15 7.31 -2.39 -0.02 1.13 16 Total: -1.00 -73.74 378.04 3.74 -70.00 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 0.90 Total: 13.45 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: 6.00 Total: 2.21 kcal Atomic # 7 Polarization: -105.18 SS G_CDS: -5.14 Total: -110.33 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.05 Total: -23.10 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -73.74 3.74 -70.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073450708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.412 kcal (2) G-P(sol) polarization free energy of solvation -73.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds