Wall clock time and date at job start Tue Mar 31 2020 12:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38236 * 120.00135 * 2 1 4 4 C 1.38236 * 120.00131 * 179.97438 * 3 2 1 5 5 C 1.38237 * 120.00081 * 359.97438 * 4 3 2 6 6 C 1.50693 * 120.00350 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.47166 * 90.00244 * 6 5 4 8 8 C 1.53002 * 109.47466 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.46927 * 180.02562 * 8 7 6 10 10 O 1.21277 * 120.00478 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99623 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00109 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47391 * 179.97438 * 12 11 9 14 14 H 1.09001 * 109.47112 * 305.00167 * 13 12 11 15 15 C 1.53001 * 109.47100 * 64.99897 * 13 12 11 16 16 C 1.53003 * 109.47014 * 184.99488 * 13 12 11 17 17 N 1.46499 * 109.46708 * 174.99880 * 16 13 12 18 18 C 1.36935 * 119.99926 * 180.02562 * 17 16 13 19 19 H 1.08005 * 119.99877 * 359.97438 * 18 17 16 20 20 C 1.38811 * 120.00369 * 179.73019 * 18 17 16 21 21 N 1.31617 * 119.99773 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47050 * 59.99408 * 22 20 18 24 24 H 1.48496 * 109.47289 * 179.97438 * 22 20 18 25 25 H 1.48508 * 109.46855 * 299.99389 * 22 20 18 26 26 C 1.38237 * 119.99704 * 0.25744 * 5 4 3 27 27 C 1.38234 * 120.00171 * 359.46791 * 26 5 4 28 28 H 1.09002 * 109.46778 * 90.00482 * 1 2 3 29 29 H 1.09003 * 109.46962 * 209.99899 * 1 2 3 30 30 H 1.08999 * 109.47532 * 330.00498 * 1 2 3 31 31 H 1.07999 * 120.00072 * 359.97018 * 3 2 1 32 32 H 1.07996 * 120.00035 * 179.97438 * 4 3 2 33 33 H 1.09009 * 109.47084 * 330.00482 * 6 5 4 34 34 H 1.08997 * 109.47363 * 210.00316 * 6 5 4 35 35 H 1.09001 * 109.47125 * 59.99896 * 7 6 5 36 36 H 1.09011 * 109.46928 * 300.00420 * 7 6 5 37 37 H 1.08996 * 109.47119 * 59.99798 * 8 7 6 38 38 H 1.09005 * 109.46529 * 299.99619 * 8 7 6 39 39 H 0.97005 * 120.00431 * 359.97438 * 11 9 8 40 40 H 1.09001 * 109.47266 * 59.99449 * 12 11 9 41 41 H 1.08997 * 109.46950 * 299.99791 * 12 11 9 42 42 H 1.08999 * 109.47109 * 59.99648 * 15 13 12 43 43 H 1.08996 * 109.47478 * 180.02562 * 15 13 12 44 44 H 1.09005 * 109.47003 * 300.00163 * 15 13 12 45 45 H 1.08998 * 109.46692 * 55.00382 * 16 13 12 46 46 H 1.08994 * 109.47584 * 295.00246 * 16 13 12 47 47 H 0.97005 * 120.00261 * 0.02562 * 17 16 13 48 48 H 0.97004 * 120.00382 * 180.02562 * 21 20 18 49 49 H 1.08003 * 120.00083 * 179.72745 * 26 5 4 50 50 H 1.08005 * 119.99935 * 180.27608 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 0.0000 0.0016 6 6 5.7787 -0.0001 0.0016 7 6 6.2887 0.0011 1.4441 8 6 7.8187 0.0017 1.4442 9 6 8.3209 0.0022 2.8651 10 8 7.5328 0.0027 3.7869 11 7 9.6460 0.0023 3.1114 12 6 10.1343 0.0022 4.4926 13 6 11.6643 0.0017 4.4926 14 1 12.0273 -0.8404 3.9033 15 6 12.1748 1.3087 3.8828 16 6 12.1742 -0.1240 5.9297 17 7 13.6341 -0.2446 5.9210 18 6 14.3178 -0.3703 7.1008 19 1 13.7807 -0.3801 8.0378 20 6 15.7007 -0.4903 7.0923 21 7 16.3548 -0.4838 5.9502 22 14 16.6333 -0.6624 8.7017 23 1 16.1718 -1.8814 9.4132 24 1 18.0874 -0.7739 8.4217 25 1 16.3820 0.5307 9.5494 26 6 3.5805 -1.1972 -0.0032 27 6 2.1982 -1.1972 0.0020 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5137 31 1 1.6582 2.1325 -0.0005 32 1 4.1205 2.1324 0.0001 33 1 6.1421 0.8895 -0.5130 34 1 6.1420 -0.8905 -0.5115 35 1 5.9253 -0.8884 1.9587 36 1 5.9253 0.8916 1.9572 37 1 8.1817 0.8914 0.9298 38 1 8.1823 -0.8886 0.9310 39 1 10.2764 0.0016 2.3741 40 1 9.7709 -0.8877 5.0064 41 1 9.7709 0.8922 5.0064 42 1 11.8117 2.1508 4.4721 43 1 13.2648 1.3082 3.8825 44 1 11.8115 1.3983 2.8590 45 1 11.7392 -1.0093 6.3934 46 1 11.8861 0.7615 6.4962 47 1 14.1166 -0.2355 5.0795 48 1 17.3211 -0.5680 5.9441 49 1 4.1205 -2.1325 -0.0069 50 1 1.6582 -2.1326 0.0027 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753628780.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:33 Heat of formation + Delta-G solvation = -39.029653 kcal Electronic energy + Delta-G solvation = -24752.375404 eV Core-core repulsion = 21164.170415 eV Total energy + Delta-G solvation = -3588.204989 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.97126 -39.60311 -36.91997 -35.52010 -34.33583 -32.80151 -32.34852 -31.22263 -30.11899 -29.05896 -26.69019 -25.80998 -24.84422 -23.02986 -22.75657 -21.98899 -20.81973 -20.49568 -19.72178 -17.41587 -16.81484 -16.30761 -16.25972 -15.95173 -15.61814 -15.37040 -14.83589 -14.54787 -14.19999 -13.97420 -13.87650 -13.71623 -13.63247 -13.42777 -13.08176 -12.83258 -12.73359 -12.57079 -12.34745 -12.11215 -12.04041 -11.94871 -11.66509 -11.31840 -11.20051 -11.05940 -10.91681 -10.89753 -10.69598 -10.56957 -10.42067 -10.10158 -9.82711 -9.64547 -9.21990 -9.00382 -8.87060 -8.76954 -6.92262 -5.76924 -3.05282 1.01946 1.10786 2.64286 3.18137 3.44796 3.44946 3.49016 3.50168 4.37373 4.45074 4.58761 4.59173 4.62163 4.70956 4.71527 4.92863 4.93740 5.05427 5.16744 5.17930 5.20662 5.22798 5.28604 5.37019 5.39420 5.40476 5.42421 5.48590 5.57995 5.73297 5.81830 5.82402 5.87463 5.96919 6.00773 6.07556 6.11394 6.12725 6.25069 6.28588 6.35020 6.39377 6.51200 6.65060 6.71947 6.77529 6.87077 7.51196 7.70201 8.23183 8.42239 9.53462 10.10781 10.45705 11.46011 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.044584 B = 0.001460 C = 0.001446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.872147 B =19171.783232 C =19364.977872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.094 4.094 3 C -0.120 4.120 4 C -0.113 4.113 5 C -0.084 4.084 6 C -0.082 4.082 7 C -0.097 4.097 8 C -0.142 4.142 9 C 0.508 3.492 10 O -0.544 6.544 11 N -0.727 5.727 12 C 0.126 3.874 13 C -0.110 4.110 14 H 0.076 0.924 15 C -0.141 4.141 16 C 0.160 3.840 17 N -0.730 5.730 18 C -0.240 4.240 19 H 0.070 0.930 20 C -0.014 4.014 21 N -0.935 5.935 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.113 4.113 27 C -0.119 4.119 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.400 0.600 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.052 0.948 43 H 0.069 0.931 44 H 0.042 0.958 45 H 0.021 0.979 46 H 0.022 0.978 47 H 0.384 0.616 48 H 0.255 0.745 49 H 0.121 0.879 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.038 1.856 -18.346 33.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 C -0.138 4.138 4 C -0.131 4.131 5 C -0.084 4.084 6 C -0.119 4.119 7 C -0.135 4.135 8 C -0.182 4.182 9 C 0.294 3.706 10 O -0.422 6.422 11 N -0.379 5.379 12 C 0.002 3.998 13 C -0.129 4.129 14 H 0.094 0.906 15 C -0.198 4.198 16 C 0.032 3.968 17 N -0.375 5.375 18 C -0.371 4.371 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.584 5.584 22 Si 0.739 3.261 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.131 4.131 27 C -0.138 4.138 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.235 0.765 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.088 0.912 44 H 0.061 0.939 45 H 0.038 0.962 46 H 0.040 0.960 47 H 0.218 0.782 48 H 0.065 0.935 49 H 0.139 0.861 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -28.553 1.843 -17.485 33.532 hybrid contribution 1.157 -0.114 0.280 1.196 sum -27.396 1.730 -17.205 32.396 Atomic orbital electron populations 1.20788 0.91335 1.02773 1.02204 1.19923 0.96041 0.93289 1.00166 1.21027 0.94232 0.97499 1.01004 1.21051 0.94128 0.97676 1.00225 1.19867 0.95670 0.93175 0.99661 1.20649 0.90888 1.03008 0.97362 1.21307 0.92706 1.04041 0.95456 1.21704 0.97782 1.04438 0.94240 1.20691 0.82268 0.76019 0.91613 1.90708 1.55336 1.49509 1.46604 1.46121 1.06971 1.75227 1.09553 1.21403 0.94081 1.02280 0.82038 1.21551 0.92672 0.99121 0.99605 0.90571 1.21787 1.02607 0.96619 0.98821 1.20577 0.86491 0.97991 0.91741 1.42326 0.99842 1.88618 1.06720 1.19204 0.89473 1.42044 0.86398 0.91211 1.24725 0.96409 1.02955 0.96851 1.69645 1.07302 1.57529 1.23887 0.86256 0.78927 0.77943 0.83000 1.21269 1.21685 1.21259 1.21056 0.94132 0.97683 1.00207 1.21031 0.94234 0.97501 1.00985 0.91293 0.91589 0.91593 0.86206 0.86065 0.90864 0.90854 0.91004 0.91020 0.88880 0.88869 0.76547 0.91474 0.91454 0.92854 0.91173 0.93919 0.96156 0.96021 0.78221 0.93494 0.86055 0.86199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.01 36.00 0.36 -0.25 16 2 C -0.09 -0.73 5.88 -104.62 -0.62 -1.34 16 3 C -0.12 -0.93 9.70 -39.58 -0.38 -1.32 16 4 C -0.11 -0.91 9.70 -39.58 -0.38 -1.29 16 5 C -0.08 -0.69 5.13 -104.63 -0.54 -1.22 16 6 C -0.08 -0.55 5.35 -27.88 -0.15 -0.70 16 7 C -0.10 -0.83 4.49 -26.73 -0.12 -0.95 16 8 C -0.14 -1.10 5.70 -27.88 -0.16 -1.26 16 9 C 0.51 6.14 7.83 -10.99 -0.09 6.05 16 10 O -0.54 -8.93 15.98 5.56 0.09 -8.84 16 11 N -0.73 -8.26 5.28 -60.30 -0.32 -8.57 16 12 C 0.13 1.75 5.06 -4.04 -0.02 1.72 16 13 C -0.11 -1.70 2.46 -90.62 -0.22 -1.92 16 14 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 15 C -0.14 -2.06 8.94 37.16 0.33 -1.73 16 16 C 0.16 3.20 5.65 -4.04 -0.02 3.18 16 17 N -0.73 -18.33 5.33 -59.91 -0.32 -18.65 16 18 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 19 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -28.11 13.06 55.49 0.72 -27.39 16 22 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 C -0.11 -0.91 9.70 -39.58 -0.38 -1.30 16 27 C -0.12 -0.94 9.70 -39.58 -0.38 -1.32 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 30 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 31 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 32 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.07 0.42 8.09 -51.92 -0.42 0.00 16 34 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 35 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 36 H 0.07 0.72 8.10 -51.92 -0.42 0.30 16 37 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.40 3.56 7.66 -40.82 -0.31 3.24 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 44 H 0.04 0.50 7.18 -51.93 -0.37 0.12 16 45 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.38 9.99 6.85 -40.82 -0.28 9.71 16 48 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 49 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 50 H 0.12 0.73 8.06 -52.48 -0.42 0.30 16 LS Contribution 410.38 15.07 6.18 6.18 Total: -1.00 -33.54 410.38 -10.59 -44.13 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -8.90 Total: 6.74 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -3.02 Total: -11.04 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: 0.09 Total: -54.61 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.09 Total: -8.84 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.54 -10.59 -44.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753628780.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.099 kcal (2) G-P(sol) polarization free energy of solvation -33.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds