Wall clock time and date at job start Tue Mar 31 2020 12:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38241 * 119.99929 * 2 1 4 4 C 1.38238 * 119.99969 * 179.97438 * 3 2 1 5 5 C 1.38231 * 119.99641 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99866 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.47181 * 90.00189 * 6 5 4 8 8 C 1.53000 * 109.46976 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.46818 * 180.02562 * 8 7 6 10 10 O 1.21288 * 120.00352 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00225 * 179.97438 * 9 8 7 12 12 C 1.46498 * 120.00343 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47138 * 179.97438 * 12 11 9 14 14 H 1.09002 * 109.46801 * 55.00308 * 13 12 11 15 15 C 1.53000 * 109.47580 * 295.00597 * 13 12 11 16 16 C 1.52997 * 109.46997 * 175.00125 * 13 12 11 17 17 N 1.46506 * 109.47289 * 185.00271 * 16 13 12 18 18 C 1.36930 * 120.00258 * 180.02562 * 17 16 13 19 19 H 1.08004 * 119.99823 * 0.02562 * 18 17 16 20 20 C 1.38815 * 120.00439 * 179.97438 * 18 17 16 21 21 N 1.31618 * 119.99225 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00268 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47411 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46826 * 120.00327 * 22 20 18 25 25 H 1.48495 * 109.47136 * 239.99966 * 22 20 18 26 26 C 1.38237 * 120.00244 * 0.25635 * 5 4 3 27 27 C 1.38229 * 119.99926 * 359.47020 * 26 5 4 28 28 H 1.08991 * 109.47033 * 89.99942 * 1 2 3 29 29 H 1.08990 * 109.47056 * 210.00604 * 1 2 3 30 30 H 1.09004 * 109.46731 * 330.00069 * 1 2 3 31 31 H 1.08001 * 120.00098 * 359.97430 * 3 2 1 32 32 H 1.08000 * 120.00052 * 179.97438 * 4 3 2 33 33 H 1.09003 * 109.46878 * 330.00158 * 6 5 4 34 34 H 1.09006 * 109.47194 * 210.00316 * 6 5 4 35 35 H 1.08995 * 109.46667 * 60.00306 * 7 6 5 36 36 H 1.08998 * 109.46881 * 300.00148 * 7 6 5 37 37 H 1.08994 * 109.47353 * 59.99964 * 8 7 6 38 38 H 1.08998 * 109.47281 * 299.99713 * 8 7 6 39 39 H 0.97001 * 119.99839 * 0.02562 * 11 9 8 40 40 H 1.09003 * 109.47058 * 60.00253 * 12 11 9 41 41 H 1.08998 * 109.47103 * 300.00186 * 12 11 9 42 42 H 1.08994 * 109.47281 * 180.02562 * 15 13 12 43 43 H 1.09006 * 109.46596 * 300.00151 * 15 13 12 44 44 H 1.09004 * 109.47031 * 59.99400 * 15 13 12 45 45 H 1.09001 * 109.47289 * 65.00143 * 16 13 12 46 46 H 1.09004 * 109.47261 * 305.00399 * 16 13 12 47 47 H 0.97001 * 119.99251 * 0.02562 * 17 16 13 48 48 H 0.97000 * 119.99950 * 179.97438 * 21 20 18 49 49 H 1.08005 * 120.00048 * 179.72402 * 26 5 4 50 50 H 1.08000 * 120.00026 * 180.27494 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.2717 0.0001 0.0016 6 6 5.7787 0.0000 0.0016 7 6 6.2887 0.0012 1.4441 8 6 7.8187 0.0018 1.4441 9 6 8.3210 0.0024 2.8649 10 8 7.5329 0.0028 3.7868 11 7 9.6461 0.0025 3.1112 12 6 10.1344 0.0036 4.4924 13 6 11.6644 0.0028 4.4924 14 1 12.0281 0.8439 3.9022 15 6 12.1738 -1.3054 3.8840 16 6 12.1744 0.1296 5.9293 17 7 13.6346 0.2490 5.9205 18 6 14.3185 0.3744 7.1002 19 1 13.7814 0.3849 8.0372 20 6 15.7020 0.4869 7.0919 21 7 16.3564 0.4736 5.9500 22 14 16.6348 0.6587 8.7011 23 1 15.6744 0.6468 9.8337 24 1 17.5844 -0.4737 8.8461 25 1 17.3872 1.9389 8.7029 26 6 3.5805 -1.1971 -0.0032 27 6 2.1982 -1.1971 0.0020 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8898 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.6582 2.1325 -0.0004 32 1 4.1206 2.1325 0.0001 33 1 6.1420 0.8896 -0.5130 34 1 6.1420 -0.8905 -0.5115 35 1 5.9254 -0.8883 1.9586 36 1 5.9254 0.8917 1.9572 37 1 8.1817 0.8915 0.9296 38 1 8.1824 -0.8884 0.9309 39 1 10.2764 0.0025 2.3740 40 1 9.7710 -0.8860 5.0070 41 1 9.7711 0.8940 5.0055 42 1 13.2638 -1.3061 3.8844 43 1 11.8100 -2.1465 4.4743 44 1 11.8104 -1.3957 2.8603 45 1 11.8856 -0.7550 6.4968 46 1 11.7402 1.0159 6.3921 47 1 14.1169 0.2392 5.0789 48 1 17.3232 0.5527 5.9441 49 1 4.1205 -2.1324 -0.0069 50 1 1.6582 -2.1324 0.0027 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753628781.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:36 Heat of formation + Delta-G solvation = -39.211011 kcal Electronic energy + Delta-G solvation = -24752.571977 eV Core-core repulsion = 21164.359123 eV Total energy + Delta-G solvation = -3588.212854 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.97145 -39.60323 -36.92193 -35.52063 -34.33888 -32.80281 -32.35109 -31.22329 -30.12172 -29.05984 -26.69127 -25.81249 -24.84734 -23.03034 -22.76064 -21.99231 -20.82033 -20.49710 -19.72358 -17.41820 -16.81794 -16.30823 -16.26055 -15.95353 -15.61820 -15.37101 -14.83796 -14.54905 -14.20063 -13.97475 -13.87499 -13.71769 -13.64035 -13.43142 -13.07461 -12.83456 -12.73391 -12.57659 -12.34806 -12.11579 -12.04049 -11.95112 -11.66572 -11.31894 -11.20075 -11.06295 -10.92149 -10.91771 -10.70879 -10.56814 -10.41554 -10.05062 -9.82729 -9.65451 -9.22033 -9.00507 -8.88438 -8.77013 -6.92489 -5.77629 -3.05821 1.01925 1.10752 2.64144 3.18026 3.43304 3.44921 3.49423 3.51424 4.37304 4.45045 4.58695 4.58807 4.62037 4.70922 4.71489 4.92811 4.93706 5.05212 5.16717 5.17865 5.20678 5.22652 5.28526 5.36948 5.39283 5.40435 5.42363 5.48570 5.57702 5.73269 5.81718 5.82337 5.87432 5.96702 6.00627 6.07529 6.11145 6.12572 6.24913 6.28559 6.34987 6.39134 6.51047 6.64891 6.71912 6.77286 6.86767 7.51066 7.70869 8.23072 8.41585 9.52995 10.10285 10.45204 11.45502 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.044640 B = 0.001460 C = 0.001445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.086794 B =19172.833222 C =19366.674182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.094 4.094 3 C -0.120 4.120 4 C -0.113 4.113 5 C -0.084 4.084 6 C -0.082 4.082 7 C -0.097 4.097 8 C -0.142 4.142 9 C 0.508 3.492 10 O -0.544 6.544 11 N -0.727 5.727 12 C 0.126 3.874 13 C -0.110 4.110 14 H 0.076 0.924 15 C -0.141 4.141 16 C 0.160 3.840 17 N -0.731 5.731 18 C -0.238 4.238 19 H 0.071 0.929 20 C -0.014 4.014 21 N -0.934 5.934 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.113 4.113 27 C -0.120 4.120 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.400 0.600 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.052 0.948 44 H 0.042 0.958 45 H 0.022 0.978 46 H 0.021 0.979 47 H 0.384 0.616 48 H 0.254 0.746 49 H 0.121 0.879 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.118 -1.836 -18.327 33.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 C -0.138 4.138 4 C -0.131 4.131 5 C -0.084 4.084 6 C -0.119 4.119 7 C -0.135 4.135 8 C -0.182 4.182 9 C 0.294 3.706 10 O -0.422 6.422 11 N -0.379 5.379 12 C 0.002 3.998 13 C -0.130 4.130 14 H 0.094 0.906 15 C -0.198 4.198 16 C 0.032 3.968 17 N -0.375 5.375 18 C -0.369 4.369 19 H 0.089 0.911 20 C -0.210 4.210 21 N -0.583 5.583 22 Si 0.738 3.262 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.131 4.131 27 C -0.138 4.138 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.235 0.765 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.071 0.929 44 H 0.061 0.939 45 H 0.040 0.960 46 H 0.039 0.961 47 H 0.218 0.782 48 H 0.064 0.936 49 H 0.139 0.861 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -28.650 -1.825 -17.455 33.598 hybrid contribution 1.179 0.108 0.261 1.212 sum -27.471 -1.717 -17.194 32.453 Atomic orbital electron populations 1.20787 0.91334 1.02774 1.02204 1.19923 0.96042 0.93290 1.00166 1.21031 0.94233 0.97501 1.00987 1.21054 0.94131 0.97685 1.00203 1.19867 0.95670 0.93175 0.99662 1.20652 0.90888 1.03007 0.97361 1.21304 0.92704 1.04041 0.95457 1.21702 0.97782 1.04440 0.94236 1.20695 0.82269 0.76017 0.91615 1.90711 1.55340 1.49513 1.46599 1.46120 1.06970 1.75226 1.09552 1.21403 0.94077 1.02281 0.82038 1.21550 0.92678 0.99119 0.99603 0.90572 1.21787 1.02616 0.96605 0.98830 1.20581 0.86482 0.98001 0.91749 1.42343 0.99846 1.88591 1.06747 1.19296 0.89438 1.41776 0.86433 0.91095 1.24729 0.96407 1.03025 0.96863 1.69666 1.07124 1.57737 1.23806 0.86110 0.79887 0.77241 0.82940 1.20530 1.21885 1.21878 1.21052 0.94129 0.97674 1.00229 1.21025 0.94234 0.97499 1.01001 0.91292 0.91593 0.91591 0.86200 0.86053 0.90855 0.90864 0.91015 0.91008 0.88861 0.88888 0.76548 0.91458 0.91466 0.91167 0.92860 0.93909 0.96009 0.96141 0.78227 0.93596 0.86065 0.86206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.01 36.01 0.36 -0.25 16 2 C -0.09 -0.73 5.88 -104.62 -0.62 -1.34 16 3 C -0.12 -0.94 9.70 -39.58 -0.38 -1.32 16 4 C -0.11 -0.91 9.70 -39.58 -0.38 -1.30 16 5 C -0.08 -0.68 5.13 -104.62 -0.54 -1.22 16 6 C -0.08 -0.55 5.35 -27.88 -0.15 -0.70 16 7 C -0.10 -0.83 4.49 -26.73 -0.12 -0.95 16 8 C -0.14 -1.10 5.70 -27.88 -0.16 -1.26 16 9 C 0.51 6.13 7.83 -10.99 -0.09 6.05 16 10 O -0.54 -8.92 15.98 5.55 0.09 -8.83 16 11 N -0.73 -8.25 5.28 -60.29 -0.32 -8.56 16 12 C 0.13 1.74 5.06 -4.04 -0.02 1.72 16 13 C -0.11 -1.69 2.46 -90.62 -0.22 -1.92 16 14 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 15 C -0.14 -2.06 8.94 37.16 0.33 -1.73 16 16 C 0.16 3.19 5.65 -4.04 -0.02 3.17 16 17 N -0.73 -18.32 5.33 -59.90 -0.32 -18.63 16 18 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 19 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -28.11 13.06 55.49 0.72 -27.39 16 22 Si 0.91 22.48 29.55 -169.99 -5.02 17.45 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 C -0.11 -0.91 9.70 -39.58 -0.38 -1.29 16 27 C -0.12 -0.93 9.70 -39.59 -0.38 -1.32 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 30 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 31 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 32 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 34 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 35 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 36 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.40 3.55 7.66 -40.82 -0.31 3.24 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.04 0.50 7.18 -51.93 -0.37 0.12 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.38 9.98 6.85 -40.82 -0.28 9.70 16 48 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 49 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 50 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 410.38 15.07 6.18 6.18 Total: -1.00 -33.59 410.38 -10.59 -44.17 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -8.90 Total: 6.63 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: -3.02 Total: -11.02 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: 0.09 Total: -54.58 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.59 -10.59 -44.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753628781.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.963 kcal (2) G-P(sol) polarization free energy of solvation -33.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds