Wall clock time and date at job start Tue Mar 31 2020 12:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38250 * 120.00058 * 2 1 4 4 C 1.38216 * 119.99931 * 179.76927 * 3 2 1 5 5 C 1.38250 * 119.99787 * 0.52679 * 4 3 2 6 6 C 1.50706 * 120.00083 * 179.74586 * 5 4 3 7 7 C 1.53002 * 109.46862 * 264.73118 * 6 5 4 8 8 C 1.50706 * 109.46862 * 180.02562 * 7 6 5 9 9 O 1.21278 * 119.99858 * 359.97438 * 8 7 6 10 10 N 1.34769 * 119.99793 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99922 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.47526 * 325.00343 * 11 10 8 13 13 C 1.53002 * 109.47181 * 84.99851 * 11 10 8 14 14 C 1.53001 * 109.47454 * 204.99824 * 11 10 8 15 15 N 1.46493 * 109.46715 * 54.99927 * 14 11 10 16 16 C 1.46497 * 120.00230 * 269.72475 * 15 14 11 17 17 C 1.36941 * 119.99808 * 90.00651 * 15 14 11 18 18 H 1.07997 * 119.99886 * 339.60626 * 17 15 14 19 19 C 1.38813 * 120.00143 * 159.61975 * 17 15 14 20 20 N 1.31625 * 119.99885 * 344.32664 * 19 17 15 21 21 Si 1.86800 * 120.00180 * 164.33427 * 19 17 15 22 22 H 1.48502 * 109.47252 * 59.99386 * 21 19 17 23 23 H 1.48501 * 109.47064 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.46899 * 299.99366 * 21 19 17 25 25 C 1.38212 * 119.99939 * 359.47285 * 5 4 3 26 26 C 1.50707 * 119.99895 * 180.27334 * 25 5 4 27 27 C 1.38214 * 119.99737 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47007 * 269.98096 * 1 2 3 29 29 H 1.08999 * 109.47109 * 29.97890 * 1 2 3 30 30 H 1.09003 * 109.47091 * 149.97712 * 1 2 3 31 31 H 1.08003 * 120.00345 * 0.02562 * 3 2 1 32 32 H 1.08005 * 120.00016 * 180.27760 * 4 3 2 33 33 H 1.08991 * 109.47280 * 144.72748 * 6 5 4 34 34 H 1.08995 * 109.46757 * 24.72438 * 6 5 4 35 35 H 1.08991 * 109.47475 * 59.99749 * 7 6 5 36 36 H 1.08995 * 109.46880 * 299.99245 * 7 6 5 37 37 H 0.97001 * 120.00568 * 359.97438 * 10 8 7 38 38 H 1.09003 * 109.47131 * 60.00201 * 13 11 10 39 39 H 1.08991 * 109.47504 * 180.02562 * 13 11 10 40 40 H 1.09000 * 109.47344 * 300.00490 * 13 11 10 41 41 H 1.08995 * 109.46932 * 295.00078 * 14 11 10 42 42 H 1.08998 * 109.47144 * 175.00335 * 14 11 10 43 43 H 1.09003 * 109.47207 * 265.09032 * 16 15 14 44 44 H 1.09000 * 109.47374 * 25.08841 * 16 15 14 45 45 H 1.09004 * 109.47233 * 145.09041 * 16 15 14 46 46 H 0.96998 * 119.99639 * 179.97438 * 20 19 17 47 47 H 1.09000 * 109.47020 * 90.00141 * 26 25 5 48 48 H 1.09000 * 109.47220 * 210.00486 * 26 25 5 49 49 H 1.08998 * 109.47188 * 330.00015 * 26 25 5 50 50 H 1.07998 * 120.00031 * 359.97368 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 0.0048 5 6 4.2717 0.0000 -0.0014 6 6 5.7787 -0.0001 -0.0019 7 6 6.2882 -0.1255 -1.4392 8 6 7.7952 -0.1262 -1.4396 9 8 8.4020 -0.0349 -0.3935 10 7 8.4686 -0.2282 -2.6026 11 6 9.9336 -0.2284 -2.6031 12 1 10.2974 0.4323 -1.8162 13 6 10.4436 -1.6489 -2.3524 14 6 10.4432 0.2646 -3.9589 15 7 9.8591 1.5754 -4.2528 16 6 8.5900 1.6657 -4.9790 17 6 10.5023 2.7166 -3.8538 18 1 11.2362 2.6743 -3.0627 19 6 10.2108 3.9279 -4.4660 20 7 9.5653 3.9471 -5.6129 21 14 10.7346 5.5307 -3.6622 22 1 12.2121 5.5502 -3.5135 23 1 10.3078 6.6725 -4.5103 24 1 10.1010 5.6435 -2.3240 25 6 3.5806 -1.1970 -0.0014 26 6 4.3341 -2.5021 -0.0019 27 6 2.1981 -1.1970 -0.0005 28 1 -0.3633 -0.0003 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6584 2.1326 0.0004 32 1 4.1205 2.1326 0.0094 33 1 6.1423 -0.8420 0.5872 34 1 6.1422 0.9312 0.4324 35 1 5.9247 0.7164 -2.0283 36 1 5.9247 -1.0567 -1.8735 37 1 7.9834 -0.3016 -3.4393 38 1 10.0800 -2.3097 -3.1394 39 1 11.5335 -1.6490 -2.3524 40 1 10.0806 -2.0002 -1.3866 41 1 10.1546 -0.4441 -4.7351 42 1 11.5296 0.3490 -3.9299 43 1 8.7886 1.8041 -6.0419 44 1 8.0212 0.7475 -4.8322 45 1 8.0159 2.5128 -4.6034 46 1 9.3613 4.7935 -6.0405 47 1 4.5161 -2.8170 1.0257 48 1 3.7449 -3.2617 -0.5157 49 1 5.2863 -2.3717 -0.5160 50 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754319908.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:46 Heat of formation + Delta-G solvation = -30.147224 kcal Electronic energy + Delta-G solvation = -26821.825051 eV Core-core repulsion = 23234.005233 eV Total energy + Delta-G solvation = -3587.819818 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.04555 -40.36694 -38.13624 -35.94976 -35.60350 -33.42429 -33.12582 -32.39133 -31.40913 -28.13341 -28.01350 -27.80587 -27.41965 -24.76506 -23.46840 -22.92735 -21.83506 -21.23720 -20.78755 -18.79133 -18.14909 -17.18690 -16.99860 -16.82196 -16.53789 -16.05982 -15.65667 -15.52318 -15.32306 -15.03934 -14.75749 -14.47087 -14.25414 -14.03609 -13.93678 -13.76592 -13.51670 -13.42991 -13.25209 -13.16550 -13.11165 -12.82409 -12.78567 -12.73160 -12.50614 -12.31783 -12.23090 -12.11624 -12.02265 -11.86873 -11.77902 -11.72435 -11.67150 -10.78065 -10.63349 -9.91554 -9.63327 -9.28379 -8.77136 -7.84084 -5.28481 0.41620 0.50069 1.42332 1.45084 1.51230 1.77059 2.38136 2.49497 2.82397 3.27836 3.65831 3.73293 3.86889 4.01562 4.04569 4.07062 4.14596 4.16067 4.32699 4.39427 4.47485 4.51148 4.53559 4.61732 4.71739 4.76184 4.79119 4.81137 4.82763 4.86872 4.94268 4.96827 5.00181 5.00690 5.05522 5.17504 5.19490 5.29738 5.31472 5.41625 5.43190 5.58725 5.60883 5.71765 5.72250 5.75952 5.79452 6.17031 6.30989 6.70950 7.15221 7.40254 7.88099 8.27747 9.17736 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.012948 B = 0.003091 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.007174 B = 9057.804852 C =10343.865831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.095 4.095 3 C -0.136 4.136 4 C -0.124 4.124 5 C -0.099 4.099 6 C -0.055 4.055 7 C -0.124 4.124 8 C 0.507 3.493 9 O -0.591 6.591 10 N -0.702 5.702 11 C 0.125 3.875 12 H 0.043 0.957 13 C -0.145 4.145 14 C 0.142 3.858 15 N -0.613 5.613 16 C 0.182 3.818 17 C -0.258 4.258 18 H 0.061 0.939 19 C -0.049 4.049 20 N -0.933 5.933 21 Si 0.957 3.043 22 H -0.276 1.276 23 H -0.291 1.291 24 H -0.288 1.288 25 C -0.084 4.084 26 C -0.118 4.118 27 C -0.127 4.127 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.132 0.868 32 H 0.118 0.882 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.094 0.906 36 H 0.117 0.883 37 H 0.404 0.596 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.044 0.956 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.004 0.996 44 H 0.038 0.962 45 H 0.010 0.990 46 H 0.248 0.752 47 H 0.074 0.926 48 H 0.082 0.918 49 H 0.066 0.934 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.410 -14.676 8.541 23.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.095 4.095 3 C -0.154 4.154 4 C -0.142 4.142 5 C -0.099 4.099 6 C -0.092 4.092 7 C -0.164 4.164 8 C 0.295 3.705 9 O -0.472 6.472 10 N -0.353 5.353 11 C 0.017 3.983 12 H 0.061 0.939 13 C -0.204 4.204 14 C 0.016 3.984 15 N -0.336 5.336 16 C 0.037 3.963 17 C -0.388 4.388 18 H 0.079 0.921 19 C -0.245 4.245 20 N -0.580 5.580 21 Si 0.786 3.214 22 H -0.202 1.202 23 H -0.217 1.217 24 H -0.215 1.215 25 C -0.084 4.084 26 C -0.175 4.175 27 C -0.145 4.145 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.150 0.850 32 H 0.136 0.864 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.113 0.887 36 H 0.135 0.865 37 H 0.242 0.758 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.022 0.978 44 H 0.057 0.943 45 H 0.029 0.971 46 H 0.057 0.943 47 H 0.093 0.907 48 H 0.101 0.899 49 H 0.085 0.915 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.010 -14.475 9.131 23.436 hybrid contribution 0.370 1.598 -0.058 1.641 sum -15.639 -12.878 9.073 22.198 Atomic orbital electron populations 1.20820 0.89432 1.03564 1.02980 1.20247 0.97446 0.92912 0.98918 1.21225 0.93838 0.98582 1.01741 1.21221 0.94913 0.97727 1.00319 1.19747 0.94845 0.93355 1.01972 1.20162 0.90665 1.03009 0.95411 1.21623 0.89789 1.05706 0.99290 1.21140 0.91157 0.74842 0.83347 1.90634 1.71560 1.52077 1.32974 1.46035 1.07327 1.72979 1.08987 1.21605 0.80089 0.96838 0.99755 0.93887 1.21996 1.01761 0.95081 1.01581 1.21218 0.97282 0.86354 0.93575 1.44044 1.22084 1.01302 1.66171 1.20565 0.85559 0.95803 0.94377 1.19364 1.19773 0.87029 1.12667 0.92083 1.25560 1.01610 1.00824 0.96457 1.70208 1.46593 1.24989 1.16230 0.85488 0.78207 0.80173 0.77486 1.20176 1.21693 1.21526 1.20002 0.94174 0.95136 0.99122 1.20908 1.00151 0.93472 1.02948 1.21165 0.93246 0.98428 1.01671 0.90435 0.91035 0.90508 0.84974 0.86354 0.90479 0.92482 0.88724 0.86516 0.75843 0.90708 0.90823 0.93652 0.91401 0.92285 0.97793 0.94346 0.97074 0.94310 0.90710 0.89899 0.91465 0.84178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 10.01 71.24 0.71 -0.62 16 2 C -0.10 -1.71 5.88 -19.87 -0.12 -1.83 16 3 C -0.14 -2.76 9.70 22.27 0.22 -2.54 16 4 C -0.12 -2.89 9.68 22.27 0.22 -2.68 16 5 C -0.10 -2.31 5.13 -19.87 -0.10 -2.41 16 6 C -0.05 -1.41 3.94 29.85 0.12 -1.29 16 7 C -0.12 -3.14 5.49 29.85 0.16 -2.98 16 8 C 0.51 16.87 7.79 87.66 0.68 17.55 16 9 O -0.59 -24.26 15.64 -3.02 -0.05 -24.31 16 10 N -0.70 -22.42 4.53 -442.53 -2.00 -24.43 16 11 C 0.12 4.31 2.88 44.99 0.13 4.44 16 12 H 0.04 1.85 7.58 -2.39 -0.02 1.83 16 13 C -0.15 -3.90 9.48 71.98 0.68 -3.21 16 14 C 0.14 5.34 5.29 86.38 0.46 5.80 16 15 N -0.61 -29.46 2.78 -726.96 -2.02 -31.48 16 16 C 0.18 8.39 8.52 127.77 1.09 9.48 16 17 C -0.26 -14.24 9.67 84.03 0.81 -13.42 16 18 H 0.06 3.38 7.88 -2.91 -0.02 3.35 16 19 C -0.05 -2.79 5.05 84.86 0.43 -2.36 16 20 N -0.93 -54.79 10.69 21.65 0.23 -54.56 16 21 Si 0.96 46.29 29.58 68.60 2.03 48.32 16 22 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 23 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 24 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 25 C -0.08 -1.69 5.88 -19.87 -0.12 -1.80 16 26 C -0.12 -1.87 9.22 71.24 0.66 -1.22 16 27 C -0.13 -2.27 9.36 22.27 0.21 -2.06 16 28 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 30 H 0.08 0.74 8.09 -2.39 -0.02 0.72 16 31 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 32 H 0.12 2.74 8.06 -2.91 -0.02 2.72 16 33 H 0.08 1.99 6.95 -2.39 -0.02 1.98 16 34 H 0.06 1.69 8.01 -2.39 -0.02 1.67 16 35 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.12 2.29 6.91 -2.39 -0.02 2.27 16 37 H 0.40 11.39 6.22 -92.71 -0.58 10.82 16 38 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.07 1.79 8.14 -2.39 -0.02 1.78 16 40 H 0.04 1.29 8.14 -2.39 -0.02 1.28 16 41 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 42 H 0.06 2.25 8.04 -2.39 -0.02 2.23 16 43 H 0.00 0.20 7.40 -2.39 -0.02 0.18 16 44 H 0.04 1.38 5.78 -2.39 -0.01 1.37 16 45 H 0.01 0.55 7.22 -2.38 -0.02 0.53 16 46 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 47 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.08 1.00 8.09 -2.39 -0.02 0.98 16 49 H 0.07 1.12 5.43 -2.39 -0.01 1.11 16 50 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -70.00 398.59 4.76 -65.24 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: 0.34 Total: 22.37 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 6.24 Total: -1.15 kcal Atomic # 7 Polarization: -106.67 SS G_CDS: -3.79 Total: -110.46 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.05 Total: -24.31 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -70.00 4.76 -65.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754319908.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.094 kcal (2) G-P(sol) polarization free energy of solvation -70.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds