Wall clock time and date at job start Tue Mar 31 2020 12:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38258 * 120.00200 * 2 1 4 4 C 1.38214 * 119.99793 * 179.77116 * 3 2 1 5 5 C 1.38255 * 119.99993 * 0.52650 * 4 3 2 6 6 C 1.50700 * 120.00170 * 179.74939 * 5 4 3 7 7 C 1.52996 * 109.47040 * 264.72987 * 6 5 4 8 8 C 1.50701 * 109.47418 * 179.97438 * 7 6 5 9 9 O 1.21290 * 119.99952 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00351 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00125 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47042 * 35.00177 * 11 10 8 13 13 C 1.52999 * 109.47196 * 275.00019 * 11 10 8 14 14 C 1.52999 * 109.46829 * 155.00148 * 11 10 8 15 15 N 1.46498 * 109.47291 * 305.00029 * 14 11 10 16 16 C 1.46499 * 119.99981 * 270.00186 * 15 14 11 17 17 C 1.36936 * 120.00173 * 90.00264 * 15 14 11 18 18 H 1.08001 * 119.99532 * 342.76688 * 17 15 14 19 19 C 1.38807 * 119.99995 * 162.48653 * 17 15 14 20 20 N 1.31614 * 120.00235 * 345.48327 * 19 17 15 21 21 Si 1.86806 * 119.99815 * 165.48219 * 19 17 15 22 22 H 1.48498 * 109.46789 * 59.99849 * 21 19 17 23 23 H 1.48498 * 109.47153 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46845 * 300.00041 * 21 19 17 25 25 C 1.38208 * 120.00117 * 359.47328 * 5 4 3 26 26 C 1.50700 * 120.00096 * 180.27490 * 25 5 4 27 27 C 1.38214 * 120.00013 * 180.02562 * 2 1 3 28 28 H 1.08994 * 109.47533 * 269.98124 * 1 2 3 29 29 H 1.09007 * 109.46655 * 29.97902 * 1 2 3 30 30 H 1.09003 * 109.47093 * 149.97222 * 1 2 3 31 31 H 1.07999 * 119.99928 * 0.02562 * 3 2 1 32 32 H 1.07997 * 119.99977 * 180.28183 * 4 3 2 33 33 H 1.08998 * 109.47643 * 144.72715 * 6 5 4 34 34 H 1.09001 * 109.47220 * 24.72458 * 6 5 4 35 35 H 1.09000 * 109.47777 * 59.99773 * 7 6 5 36 36 H 1.09001 * 109.47371 * 299.99504 * 7 6 5 37 37 H 0.96999 * 120.00222 * 0.02562 * 10 8 7 38 38 H 1.09002 * 109.47389 * 179.97438 * 13 11 10 39 39 H 1.09000 * 109.47255 * 300.00028 * 13 11 10 40 40 H 1.09007 * 109.47227 * 60.00186 * 13 11 10 41 41 H 1.09001 * 109.46634 * 185.00115 * 14 11 10 42 42 H 1.09004 * 109.47409 * 65.00411 * 14 11 10 43 43 H 1.08999 * 109.47469 * 264.99253 * 16 15 14 44 44 H 1.09008 * 109.47402 * 24.99063 * 16 15 14 45 45 H 1.09003 * 109.47251 * 144.98874 * 16 15 14 46 46 H 0.97004 * 120.00153 * 180.02562 * 20 19 17 47 47 H 1.09004 * 109.47106 * 90.00357 * 26 25 5 48 48 H 1.08999 * 109.47468 * 210.00044 * 26 25 5 49 49 H 1.08999 * 109.47478 * 330.00095 * 26 25 5 50 50 H 1.07999 * 120.00016 * 359.97398 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 0.0048 5 6 4.2717 -0.0001 -0.0014 6 6 5.7787 -0.0002 -0.0019 7 6 6.2881 -0.1256 -1.4391 8 6 7.7951 -0.1250 -1.4398 9 8 8.4020 -0.0330 -0.3936 10 7 8.4686 -0.2269 -2.6027 11 6 9.9337 -0.2258 -2.6033 12 1 10.2977 -0.7390 -1.7133 13 6 10.4426 1.2170 -2.6043 14 6 10.4436 -0.9473 -3.8524 15 7 9.8604 -2.2899 -3.9132 16 6 10.5492 -3.4171 -3.2800 17 6 8.6714 -2.4911 -4.5620 18 1 8.0284 -1.6521 -4.7835 19 6 8.2953 -3.7727 -4.9401 20 7 9.1818 -4.7455 -4.9406 21 14 6.5309 -4.1166 -5.4482 22 1 6.1821 -3.2788 -6.6236 23 1 6.3889 -5.5514 -5.8040 24 1 5.6193 -3.7929 -4.3216 25 6 3.5806 -1.1970 -0.0014 26 6 4.3341 -2.5021 -0.0020 27 6 2.1980 -1.1970 -0.0005 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8903 -0.5136 30 1 -0.3633 -0.8898 -0.5143 31 1 1.6583 2.1326 0.0004 32 1 4.1205 2.1325 0.0094 33 1 6.1422 -0.8422 0.5872 34 1 6.1422 0.9310 0.4324 35 1 5.9247 0.7164 -2.0283 36 1 5.9247 -1.0568 -1.8736 37 1 7.9834 -0.3002 -3.4394 38 1 11.5326 1.2179 -2.6043 39 1 10.0786 1.7301 -3.4944 40 1 10.0793 1.7311 -1.7144 41 1 11.5300 -1.0248 -3.8092 42 1 10.1545 -0.3850 -4.7404 43 1 11.1605 -3.9321 -4.0210 44 1 11.1865 -3.0483 -2.4762 45 1 9.8132 -4.1096 -2.8714 46 1 8.9190 -5.6410 -5.2052 47 1 4.5160 -2.8170 1.0256 48 1 3.7448 -3.2617 -0.5157 49 1 5.2863 -2.3718 -0.5161 50 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754319909.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:51 Heat of formation + Delta-G solvation = -14.669115 kcal Electronic energy + Delta-G solvation = -27156.339096 eV Core-core repulsion = 23569.190459 eV Total energy + Delta-G solvation = -3587.148637 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -39.93187 -39.12075 -36.45973 -34.82393 -33.99542 -32.45092 -31.65153 -31.00024 -29.95374 -27.27846 -26.87821 -26.18154 -25.63130 -23.66916 -22.11599 -21.72332 -20.32937 -19.87217 -19.69907 -17.09310 -16.42641 -16.14448 -15.59801 -15.53887 -15.07898 -14.82795 -14.69786 -14.14804 -13.81647 -13.60683 -13.34287 -13.22617 -13.11257 -12.96028 -12.89751 -12.61848 -12.36583 -12.18649 -12.07125 -12.00613 -11.86448 -11.60986 -11.36744 -11.14260 -11.04582 -10.87114 -10.84576 -10.82305 -10.69226 -10.40390 -10.29828 -10.04691 -9.87711 -9.30062 -8.76946 -8.56666 -8.40022 -8.37785 -6.82598 -5.75916 -3.17741 1.29224 1.36701 3.19910 3.33449 3.39137 3.40892 3.61713 3.87171 4.44698 4.69853 4.73212 4.87990 4.94212 5.09172 5.21766 5.27529 5.31057 5.33494 5.39769 5.45970 5.47919 5.53696 5.61016 5.65522 5.69143 5.70586 5.76194 5.87395 5.92660 5.94692 5.98485 6.09273 6.15064 6.21036 6.23409 6.35939 6.45380 6.46913 6.47709 6.53301 6.71378 6.76631 6.83469 7.01236 7.18586 7.42358 7.63112 7.78248 8.18442 8.32670 8.83265 9.18992 9.83543 10.31759 11.29023 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.011622 B = 0.003833 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.688704 B = 7302.677281 C = 8974.770669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.092 4.092 3 C -0.128 4.128 4 C -0.109 4.109 5 C -0.084 4.084 6 C -0.062 4.062 7 C -0.137 4.137 8 C 0.513 3.487 9 O -0.561 6.561 10 N -0.696 5.696 11 C 0.117 3.883 12 H 0.076 0.924 13 C -0.158 4.158 14 C 0.142 3.858 15 N -0.600 5.600 16 C 0.166 3.834 17 C -0.251 4.251 18 H 0.066 0.934 19 C 0.002 3.998 20 N -0.906 5.906 21 Si 0.898 3.102 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.283 1.283 25 C -0.073 4.073 26 C -0.124 4.124 27 C -0.121 4.121 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.402 0.598 38 H 0.059 0.941 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.027 0.973 44 H -0.005 1.005 45 H 0.046 0.954 46 H 0.253 0.747 47 H 0.071 0.929 48 H 0.066 0.934 49 H 0.076 0.924 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.378 10.704 8.329 17.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 C -0.146 4.146 4 C -0.127 4.127 5 C -0.084 4.084 6 C -0.100 4.100 7 C -0.177 4.177 8 C 0.299 3.701 9 O -0.441 6.441 10 N -0.346 5.346 11 C 0.009 3.991 12 H 0.094 0.906 13 C -0.217 4.217 14 C 0.013 3.987 15 N -0.323 5.323 16 C 0.021 3.979 17 C -0.380 4.380 18 H 0.084 0.916 19 C -0.196 4.196 20 N -0.551 5.551 21 Si 0.728 3.272 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.210 1.210 25 C -0.073 4.073 26 C -0.180 4.180 27 C -0.139 4.139 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.114 0.886 37 H 0.238 0.762 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.045 0.955 44 H 0.014 0.986 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.089 0.911 48 H 0.085 0.915 49 H 0.095 0.905 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.937 10.537 8.984 17.645 hybrid contribution -1.256 -0.367 -0.788 1.527 sum -12.193 10.170 8.196 17.868 Atomic orbital electron populations 1.20765 0.91476 1.02602 1.02058 1.19858 0.95838 0.93231 1.00281 1.20950 0.94155 0.97295 1.02168 1.21027 0.94034 0.97512 1.00164 1.19820 0.95723 0.92589 1.00298 1.20300 0.89631 1.04136 0.95939 1.21654 0.92906 1.04605 0.98561 1.20485 0.89698 0.75928 0.83959 1.90632 1.70522 1.51277 1.31670 1.45949 1.07373 1.72368 1.08935 1.21842 0.79953 0.94936 1.02344 0.90577 1.22121 1.00803 0.97397 1.01374 1.21048 0.96128 0.87321 0.94180 1.43858 1.23826 1.02181 1.62412 1.20793 0.95018 0.89055 0.93043 1.19003 0.94603 0.92857 1.31546 0.91586 1.24882 0.97713 0.96869 1.00135 1.70089 1.31811 1.01363 1.51838 0.86443 0.85085 0.77269 0.78450 1.20990 1.21629 1.20997 1.19830 0.93546 0.95123 0.98778 1.20925 1.00775 0.93821 1.02502 1.20900 0.93495 0.97482 1.01988 0.91421 0.91721 0.91684 0.86410 0.86105 0.90046 0.90529 0.89371 0.88623 0.76164 0.92199 0.92961 0.92945 0.93068 0.93112 0.95513 0.98630 0.93481 0.93697 0.91053 0.91527 0.90549 0.86287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.01 36.00 0.36 -0.54 16 2 C -0.09 -0.99 5.88 -104.62 -0.62 -1.61 16 3 C -0.13 -1.37 9.70 -39.58 -0.38 -1.75 16 4 C -0.11 -1.26 9.68 -39.58 -0.38 -1.64 16 5 C -0.08 -1.08 5.13 -104.63 -0.54 -1.61 16 6 C -0.06 -0.85 3.94 -27.88 -0.11 -0.96 16 7 C -0.14 -1.97 5.49 -27.88 -0.15 -2.12 16 8 C 0.51 9.02 7.79 -10.99 -0.09 8.93 16 9 O -0.56 -11.44 15.65 5.55 0.09 -11.35 16 10 N -0.70 -12.23 4.49 -53.80 -0.24 -12.47 16 11 C 0.12 2.07 2.88 -67.93 -0.20 1.88 16 12 H 0.08 1.54 7.58 -51.93 -0.39 1.15 16 13 C -0.16 -2.31 9.48 37.16 0.35 -1.95 16 14 C 0.14 2.73 5.30 -4.04 -0.02 2.71 16 15 N -0.60 -14.32 2.82 -181.12 -0.51 -14.83 16 16 C 0.17 4.07 8.97 59.85 0.54 4.61 16 17 C -0.25 -6.37 8.80 -15.06 -0.13 -6.50 16 18 H 0.07 1.57 6.40 -52.49 -0.34 1.23 16 19 C 0.00 0.06 5.09 -17.43 -0.09 -0.03 16 20 N -0.91 -25.77 10.48 55.49 0.58 -25.19 16 21 Si 0.90 20.96 29.58 -169.99 -5.03 15.93 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C -0.07 -0.93 5.88 -104.63 -0.62 -1.55 16 26 C -0.12 -1.54 9.22 36.01 0.33 -1.21 16 27 C -0.12 -1.41 9.36 -39.58 -0.37 -1.78 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 30 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 31 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 32 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.08 1.19 6.95 -51.93 -0.36 0.83 16 34 H 0.08 1.03 8.01 -51.93 -0.42 0.61 16 35 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.10 1.43 6.91 -51.93 -0.36 1.07 16 37 H 0.40 6.92 6.59 -40.82 -0.27 6.66 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 41 H 0.05 0.93 8.07 -51.93 -0.42 0.51 16 42 H 0.05 0.95 8.04 -51.93 -0.42 0.53 16 43 H 0.03 0.70 7.49 -51.93 -0.39 0.31 16 44 H 0.00 -0.11 8.03 -51.92 -0.42 -0.53 16 45 H 0.05 1.26 6.99 -51.93 -0.36 0.90 16 46 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 47 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 49 H 0.08 1.06 5.43 -51.93 -0.28 0.77 16 50 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 399.01 15.07 6.01 6.01 Total: -1.00 -30.47 399.01 -9.83 -40.30 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -8.62 Total: 6.73 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -2.11 Total: -5.13 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.17 Total: -52.50 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.09 Total: -11.35 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.47 -9.83 -40.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754319909.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.635 kcal (2) G-P(sol) polarization free energy of solvation -30.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds