Wall clock time and date at job start Tue Mar 31 2020 12:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38258 * 120.00200 * 2 1 4 4 C 1.38214 * 119.99793 * 179.77116 * 3 2 1 5 5 C 1.38255 * 119.99993 * 0.52650 * 4 3 2 6 6 C 1.50700 * 120.00170 * 179.74939 * 5 4 3 7 7 C 1.52996 * 109.47040 * 264.72987 * 6 5 4 8 8 C 1.50701 * 109.47418 * 179.97438 * 7 6 5 9 9 O 1.21290 * 119.99952 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00351 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00125 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47042 * 35.00177 * 11 10 8 13 13 C 1.52999 * 109.47196 * 275.00019 * 11 10 8 14 14 C 1.52999 * 109.46829 * 155.00148 * 11 10 8 15 15 N 1.46498 * 109.47291 * 305.00029 * 14 11 10 16 16 C 1.46499 * 119.99981 * 270.00186 * 15 14 11 17 17 C 1.36936 * 120.00173 * 90.00264 * 15 14 11 18 18 H 1.08001 * 119.99532 * 342.76688 * 17 15 14 19 19 C 1.38807 * 119.99995 * 162.48653 * 17 15 14 20 20 N 1.31614 * 120.00235 * 345.48327 * 19 17 15 21 21 Si 1.86806 * 119.99815 * 165.48219 * 19 17 15 22 22 H 1.48498 * 109.46789 * 59.99849 * 21 19 17 23 23 H 1.48498 * 109.47153 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46845 * 300.00041 * 21 19 17 25 25 C 1.38208 * 120.00117 * 359.47328 * 5 4 3 26 26 C 1.50700 * 120.00096 * 180.27490 * 25 5 4 27 27 C 1.38214 * 120.00013 * 180.02562 * 2 1 3 28 28 H 1.08994 * 109.47533 * 269.98124 * 1 2 3 29 29 H 1.09007 * 109.46655 * 29.97902 * 1 2 3 30 30 H 1.09003 * 109.47093 * 149.97222 * 1 2 3 31 31 H 1.07999 * 119.99928 * 0.02562 * 3 2 1 32 32 H 1.07997 * 119.99977 * 180.28183 * 4 3 2 33 33 H 1.08998 * 109.47643 * 144.72715 * 6 5 4 34 34 H 1.09001 * 109.47220 * 24.72458 * 6 5 4 35 35 H 1.09000 * 109.47777 * 59.99773 * 7 6 5 36 36 H 1.09001 * 109.47371 * 299.99504 * 7 6 5 37 37 H 0.96999 * 120.00222 * 0.02562 * 10 8 7 38 38 H 1.09002 * 109.47389 * 179.97438 * 13 11 10 39 39 H 1.09000 * 109.47255 * 300.00028 * 13 11 10 40 40 H 1.09007 * 109.47227 * 60.00186 * 13 11 10 41 41 H 1.09001 * 109.46634 * 185.00115 * 14 11 10 42 42 H 1.09004 * 109.47409 * 65.00411 * 14 11 10 43 43 H 1.08999 * 109.47469 * 264.99253 * 16 15 14 44 44 H 1.09008 * 109.47402 * 24.99063 * 16 15 14 45 45 H 1.09003 * 109.47251 * 144.98874 * 16 15 14 46 46 H 0.97004 * 120.00153 * 180.02562 * 20 19 17 47 47 H 1.09004 * 109.47106 * 90.00357 * 26 25 5 48 48 H 1.08999 * 109.47468 * 210.00044 * 26 25 5 49 49 H 1.08999 * 109.47478 * 330.00095 * 26 25 5 50 50 H 1.07999 * 120.00016 * 359.97398 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 0.0048 5 6 4.2717 -0.0001 -0.0014 6 6 5.7787 -0.0002 -0.0019 7 6 6.2881 -0.1256 -1.4391 8 6 7.7951 -0.1250 -1.4398 9 8 8.4020 -0.0330 -0.3936 10 7 8.4686 -0.2269 -2.6027 11 6 9.9337 -0.2258 -2.6033 12 1 10.2977 -0.7390 -1.7133 13 6 10.4426 1.2170 -2.6043 14 6 10.4436 -0.9473 -3.8524 15 7 9.8604 -2.2899 -3.9132 16 6 10.5492 -3.4171 -3.2800 17 6 8.6714 -2.4911 -4.5620 18 1 8.0284 -1.6521 -4.7835 19 6 8.2953 -3.7727 -4.9401 20 7 9.1818 -4.7455 -4.9406 21 14 6.5309 -4.1166 -5.4482 22 1 6.1821 -3.2788 -6.6236 23 1 6.3889 -5.5514 -5.8040 24 1 5.6193 -3.7929 -4.3216 25 6 3.5806 -1.1970 -0.0014 26 6 4.3341 -2.5021 -0.0020 27 6 2.1980 -1.1970 -0.0005 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8903 -0.5136 30 1 -0.3633 -0.8898 -0.5143 31 1 1.6583 2.1326 0.0004 32 1 4.1205 2.1325 0.0094 33 1 6.1422 -0.8422 0.5872 34 1 6.1422 0.9310 0.4324 35 1 5.9247 0.7164 -2.0283 36 1 5.9247 -1.0568 -1.8736 37 1 7.9834 -0.3002 -3.4394 38 1 11.5326 1.2179 -2.6043 39 1 10.0786 1.7301 -3.4944 40 1 10.0793 1.7311 -1.7144 41 1 11.5300 -1.0248 -3.8092 42 1 10.1545 -0.3850 -4.7404 43 1 11.1605 -3.9321 -4.0210 44 1 11.1865 -3.0483 -2.4762 45 1 9.8132 -4.1096 -2.8714 46 1 8.9190 -5.6410 -5.2052 47 1 4.5160 -2.8170 1.0256 48 1 3.7448 -3.2617 -0.5157 49 1 5.2863 -2.3718 -0.5161 50 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754319909.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:50 Heat of formation + Delta-G solvation = -29.756570 kcal Electronic energy + Delta-G solvation = -27156.993337 eV Core-core repulsion = 23569.190459 eV Total energy + Delta-G solvation = -3587.802878 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.01643 -40.34808 -38.10574 -35.93052 -35.56579 -33.44906 -33.15941 -32.32757 -31.30235 -28.15550 -28.07069 -27.81955 -27.37177 -24.73274 -23.48185 -22.94548 -21.75752 -21.19156 -20.79538 -18.81020 -17.93417 -17.18465 -17.00450 -16.91287 -16.50975 -16.03228 -15.65333 -15.55760 -15.17300 -14.91421 -14.78822 -14.52600 -14.23950 -14.05483 -13.95116 -13.80982 -13.48707 -13.46215 -13.21756 -13.18366 -13.03688 -12.86657 -12.79159 -12.62175 -12.59941 -12.24906 -12.16982 -12.12083 -12.04653 -11.87023 -11.76577 -11.74331 -11.67490 -10.72969 -10.56679 -9.83864 -9.64197 -9.28873 -8.79219 -7.78174 -5.21012 0.41256 0.49711 1.48106 1.50746 1.55440 1.80019 2.44353 2.53535 2.82562 3.36277 3.68381 3.76334 3.85378 4.00782 4.04316 4.09128 4.14366 4.16688 4.32370 4.41121 4.46583 4.49909 4.54646 4.63198 4.69178 4.72021 4.76365 4.81285 4.84463 4.85314 4.89850 4.95092 4.99304 5.00854 5.01839 5.16916 5.18920 5.32132 5.32698 5.38003 5.45982 5.57134 5.60932 5.71498 5.71790 5.78937 5.79355 6.16227 6.32519 6.77029 7.16691 7.43716 7.89900 8.34863 9.26346 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.011622 B = 0.003833 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.688704 B = 7302.677281 C = 8974.770669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.095 4.095 3 C -0.131 4.131 4 C -0.114 4.114 5 C -0.099 4.099 6 C -0.053 4.053 7 C -0.128 4.128 8 C 0.509 3.491 9 O -0.593 6.593 10 N -0.697 5.697 11 C 0.124 3.876 12 H 0.048 0.952 13 C -0.146 4.146 14 C 0.142 3.858 15 N -0.615 5.615 16 C 0.181 3.819 17 C -0.243 4.243 18 H 0.085 0.915 19 C -0.057 4.057 20 N -0.943 5.943 21 Si 0.956 3.044 22 H -0.272 1.272 23 H -0.304 1.304 24 H -0.276 1.276 25 C -0.089 4.089 26 C -0.122 4.122 27 C -0.133 4.133 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.142 0.858 32 H 0.135 0.865 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.405 0.595 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.044 0.956 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.004 0.996 44 H 0.018 0.982 45 H 0.016 0.984 46 H 0.244 0.756 47 H 0.076 0.924 48 H 0.071 0.929 49 H 0.057 0.943 50 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.267 13.085 8.060 20.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.095 4.095 3 C -0.149 4.149 4 C -0.132 4.132 5 C -0.099 4.099 6 C -0.090 4.090 7 C -0.167 4.167 8 C 0.297 3.703 9 O -0.475 6.475 10 N -0.347 5.347 11 C 0.016 3.984 12 H 0.066 0.934 13 C -0.205 4.205 14 C 0.015 3.985 15 N -0.337 5.337 16 C 0.035 3.965 17 C -0.373 4.373 18 H 0.103 0.897 19 C -0.251 4.251 20 N -0.591 5.591 21 Si 0.785 3.215 22 H -0.198 1.198 23 H -0.231 1.231 24 H -0.202 1.202 25 C -0.089 4.089 26 C -0.178 4.178 27 C -0.151 4.151 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.160 0.840 32 H 0.153 0.847 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.131 0.869 36 H 0.108 0.892 37 H 0.242 0.758 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.022 0.978 44 H 0.036 0.964 45 H 0.034 0.966 46 H 0.053 0.947 47 H 0.094 0.906 48 H 0.090 0.910 49 H 0.076 0.924 50 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.830 12.970 8.708 20.216 hybrid contribution -0.640 -1.044 -0.664 1.393 sum -13.470 11.926 8.044 19.708 Atomic orbital electron populations 1.20817 0.89418 1.03522 1.03011 1.20241 0.97447 0.92877 0.98938 1.21280 0.93956 0.98379 1.01286 1.21247 0.94702 0.97543 0.99690 1.19773 0.94970 0.93320 1.01884 1.20152 0.90570 1.03220 0.95091 1.21624 0.90366 1.05214 0.99524 1.21015 0.90968 0.75002 0.83328 1.90615 1.71455 1.52711 1.32693 1.45999 1.07416 1.72171 1.09134 1.21648 0.80190 0.96577 0.99971 0.93396 1.22003 1.01899 0.94785 1.01798 1.21236 0.96858 0.85155 0.95262 1.44092 1.23860 1.03612 1.62171 1.20487 0.94079 0.89008 0.92884 1.19469 0.95172 0.93166 1.29523 0.89732 1.25616 1.00941 0.97121 1.01455 1.70264 1.33415 1.01304 1.54120 0.85498 0.81252 0.76251 0.78514 1.19770 1.23104 1.20232 1.19937 0.94276 0.95004 0.99689 1.20888 0.99945 0.94365 1.02643 1.21118 0.93150 0.98632 1.02169 0.90346 0.90452 0.91174 0.84008 0.84665 0.91946 0.90581 0.86940 0.89239 0.75835 0.90401 0.91235 0.93708 0.91731 0.91838 0.97813 0.96372 0.96551 0.94700 0.90587 0.91001 0.92430 0.85173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 10.01 71.23 0.71 -0.74 16 2 C -0.10 -1.83 5.88 -19.87 -0.12 -1.94 16 3 C -0.13 -2.47 9.70 22.27 0.22 -2.25 16 4 C -0.11 -2.41 9.68 22.27 0.22 -2.19 16 5 C -0.10 -2.46 5.13 -19.87 -0.10 -2.56 16 6 C -0.05 -1.42 3.94 29.85 0.12 -1.30 16 7 C -0.13 -3.56 5.49 29.85 0.16 -3.39 16 8 C 0.51 17.66 7.79 87.66 0.68 18.35 16 9 O -0.59 -24.31 15.65 -3.06 -0.05 -24.35 16 10 N -0.70 -23.68 4.49 -442.52 -1.99 -25.67 16 11 C 0.12 4.22 2.88 44.99 0.13 4.35 16 12 H 0.05 1.92 7.58 -2.39 -0.02 1.91 16 13 C -0.15 -3.91 9.48 71.98 0.68 -3.23 16 14 C 0.14 5.21 5.30 86.38 0.46 5.67 16 15 N -0.61 -29.06 2.82 -726.93 -2.05 -31.11 16 16 C 0.18 9.04 8.97 127.77 1.15 10.19 16 17 C -0.24 -12.19 8.80 84.03 0.74 -11.45 16 18 H 0.09 3.85 6.40 -2.91 -0.02 3.83 16 19 C -0.06 -3.07 5.09 84.86 0.43 -2.63 16 20 N -0.94 -55.03 10.48 21.65 0.23 -54.80 16 21 Si 0.96 43.21 29.58 68.60 2.03 45.23 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 23 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 24 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 25 C -0.09 -2.22 5.88 -19.87 -0.12 -2.34 16 26 C -0.12 -3.07 9.22 71.24 0.66 -2.42 16 27 C -0.13 -2.92 9.36 22.27 0.21 -2.71 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.08 0.82 8.09 -2.38 -0.02 0.80 16 30 H 0.07 0.85 8.09 -2.39 -0.02 0.83 16 31 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 32 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 33 H 0.06 1.89 6.95 -2.39 -0.02 1.88 16 34 H 0.08 2.02 8.01 -2.39 -0.02 2.00 16 35 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.09 2.64 6.91 -2.39 -0.02 2.63 16 37 H 0.41 13.22 6.59 -92.71 -0.61 12.61 16 38 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 40 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 41 H 0.06 2.21 8.07 -2.39 -0.02 2.20 16 42 H 0.06 2.20 8.04 -2.38 -0.02 2.18 16 43 H 0.00 0.19 7.49 -2.39 -0.02 0.18 16 44 H 0.02 0.79 8.03 -2.38 -0.02 0.78 16 45 H 0.02 0.88 6.99 -2.39 -0.02 0.86 16 46 H 0.24 14.06 8.31 -92.71 -0.77 13.29 16 47 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 48 H 0.07 1.67 8.09 -2.39 -0.02 1.65 16 49 H 0.06 1.64 5.43 -2.39 -0.01 1.63 16 50 H 0.13 2.45 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -66.16 399.01 4.70 -61.47 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: 0.30 Total: 29.84 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 6.23 Total: -0.60 kcal Atomic # 7 Polarization: -107.77 SS G_CDS: -3.81 Total: -111.58 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.05 Total: -24.35 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -66.16 4.70 -61.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754319909.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.710 kcal (2) G-P(sol) polarization free energy of solvation -66.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds