Wall clock time and date at job start Tue Mar 31 2020 12:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46951 * 2 1 4 4 C 1.53003 * 109.47595 * 240.00001 * 2 1 3 5 5 C 1.53001 * 109.47156 * 119.99829 * 2 1 3 6 6 N 1.46504 * 109.46987 * 58.17210 * 5 2 1 7 7 C 1.34779 * 120.00041 * 259.97409 * 6 5 2 8 8 O 1.21270 * 120.00326 * 188.58377 * 7 6 5 9 9 C 1.50710 * 119.99885 * 8.58615 * 7 6 5 10 10 C 1.52997 * 109.47026 * 184.79564 * 9 7 6 11 11 C 1.52993 * 109.47020 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47428 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47434 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00118 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99684 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00411 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99610 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47173 * 60.00446 * 17 15 13 19 19 H 1.48502 * 109.47165 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47339 * 300.00006 * 17 15 13 21 21 C 1.39399 * 120.00163 * 79.97681 * 6 5 2 22 22 C 1.39040 * 119.69936 * 193.29000 * 21 6 5 23 23 C 1.38359 * 119.10292 * 179.97438 * 22 21 6 24 24 C 1.38838 * 118.49235 * 359.97438 * 23 22 21 25 25 C 1.38072 * 119.31460 * 0.26268 * 24 23 22 26 26 N 1.31935 * 120.84513 * 359.49080 * 25 24 23 27 27 H 1.08996 * 109.47333 * 310.33373 * 1 2 3 28 28 H 1.09002 * 109.46688 * 70.33409 * 1 2 3 29 29 H 1.09000 * 109.46850 * 190.32869 * 1 2 3 30 30 H 1.09002 * 109.47208 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47156 * 299.99416 * 3 2 1 32 32 H 1.09001 * 109.46910 * 60.00264 * 3 2 1 33 33 H 1.09001 * 109.47141 * 300.00144 * 4 2 1 34 34 H 1.09002 * 109.46845 * 60.00026 * 4 2 1 35 35 H 1.09002 * 109.47046 * 180.02562 * 4 2 1 36 36 H 1.09000 * 109.47149 * 298.17503 * 5 2 1 37 37 H 1.09001 * 109.47256 * 178.17224 * 5 2 1 38 38 H 1.09001 * 109.46988 * 304.79937 * 9 7 6 39 39 H 1.09005 * 109.46562 * 64.79633 * 9 7 6 40 40 H 1.09003 * 109.47323 * 300.00531 * 10 9 7 41 41 H 1.09005 * 109.46685 * 60.00339 * 10 9 7 42 42 H 1.09003 * 109.47490 * 300.00410 * 11 10 9 43 43 H 1.08997 * 109.47364 * 60.00320 * 11 10 9 44 44 H 1.09003 * 109.46855 * 300.00475 * 12 11 10 45 45 H 1.08997 * 109.46851 * 59.99682 * 12 11 10 46 46 H 0.97004 * 120.00091 * 179.97438 * 16 15 13 47 47 H 1.07995 * 120.44303 * 0.02562 * 22 21 6 48 48 H 1.07997 * 120.74980 * 179.97438 * 23 22 21 49 49 H 1.07997 * 120.34308 * 179.97438 * 24 23 22 50 50 H 1.07998 * 119.57385 * 179.74285 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 7 1.5160 -2.0892 1.2715 7 6 0.4518 -2.3907 2.0416 8 8 0.1134 -3.5467 2.1827 9 6 -0.3178 -1.2913 2.7274 10 6 -1.3928 -1.9054 3.6263 11 6 -2.1745 -0.7893 4.3220 12 6 -3.2491 -1.4034 5.2215 13 6 -4.0186 -0.3040 5.9072 14 1 -3.7668 0.7293 5.7199 15 6 -5.0449 -0.6175 6.7729 16 7 -5.3520 -1.8758 7.0006 17 14 -5.9992 0.7453 7.6224 18 1 -6.6430 1.6097 6.6008 19 1 -7.0422 0.1492 8.4955 20 1 -5.0709 1.5602 8.4466 21 6 2.1181 -3.0789 0.4962 22 6 1.4671 -4.2918 0.3004 23 6 2.0758 -5.2653 -0.4717 24 6 3.3196 -4.9908 -1.0242 25 6 3.9104 -3.7661 -0.7843 26 7 3.3039 -2.8551 -0.0475 27 1 -0.3634 0.6651 0.7833 28 1 -0.3633 0.3459 -0.9678 29 1 -0.3633 -1.0110 0.1843 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6768 -1.7489 -1.2493 34 1 1.6768 -0.2074 -2.1392 35 1 3.1301 -0.7216 -1.2489 36 1 1.7036 -0.1888 2.1389 37 1 3.1295 -0.7497 1.2330 38 1 0.3639 -0.6935 3.3325 39 1 -0.7902 -0.6564 1.9777 40 1 -2.0744 -2.5033 3.0212 41 1 -0.9203 -2.5403 4.3759 42 1 -1.4931 -0.1911 4.9270 43 1 -2.6469 -0.1548 3.5722 44 1 -3.9305 -2.0018 4.6168 45 1 -2.7763 -2.0377 5.9712 46 1 -6.0738 -2.0963 7.6100 47 1 0.4991 -4.4712 0.7444 48 1 1.5942 -6.2171 -0.6407 49 1 3.8218 -5.7292 -1.6314 50 1 4.8797 -3.5497 -1.2085 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891494708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:50 Heat of formation + Delta-G solvation = -5.417443 kcal Electronic energy + Delta-G solvation = -27351.759274 eV Core-core repulsion = 23765.011820 eV Total energy + Delta-G solvation = -3586.747454 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.55156 -39.38058 -37.90764 -35.17439 -34.60803 -32.73485 -32.52973 -30.97352 -29.49672 -27.59825 -27.44109 -26.68573 -25.80979 -23.88942 -23.31168 -21.98280 -20.16178 -20.08146 -18.94302 -17.64031 -17.24402 -16.69617 -16.43942 -16.15440 -15.39440 -15.17576 -14.79059 -14.53506 -14.40899 -14.08543 -13.99803 -13.85034 -13.55233 -13.17563 -12.77940 -12.65950 -12.50447 -12.39107 -12.17714 -11.84599 -11.75177 -11.68749 -11.64001 -11.45158 -11.05470 -10.93738 -10.85938 -10.54933 -10.49524 -10.42461 -10.36175 -9.97040 -9.75459 -9.63290 -9.53868 -9.24855 -9.01446 -8.31035 -8.25144 -5.95933 -3.98585 0.95541 1.15282 2.42828 2.45883 3.34844 3.39387 3.41440 3.72615 4.18009 4.40434 4.48017 4.49915 4.55608 4.68526 4.76155 4.92158 4.98570 5.07967 5.09018 5.20183 5.24062 5.27880 5.39254 5.39862 5.46256 5.54277 5.59267 5.67740 5.69318 5.73204 5.76495 5.83137 5.89509 5.99136 6.05294 6.09846 6.13778 6.17754 6.21965 6.23907 6.49574 6.77168 6.79244 6.84743 6.98023 7.17864 7.72566 7.78061 7.88292 7.95850 8.05100 8.46706 9.08881 9.65131 11.15352 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.018624 B = 0.002684 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.055639 B =10429.457623 C =11605.990305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.082 4.082 3 C -0.138 4.138 4 C -0.133 4.133 5 C 0.114 3.886 6 N -0.544 5.544 7 C 0.519 3.481 8 O -0.507 6.507 9 C -0.147 4.147 10 C -0.105 4.105 11 C -0.109 4.109 12 C 0.021 3.979 13 C -0.521 4.521 14 H 0.054 0.946 15 C 0.056 3.944 16 N -0.895 5.895 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C 0.364 3.636 22 C -0.199 4.199 23 C -0.056 4.056 24 C -0.207 4.207 25 C 0.121 3.879 26 N -0.510 5.510 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.046 0.954 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.261 0.739 47 H 0.173 0.827 48 H 0.134 0.866 49 H 0.131 0.869 50 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.161 0.322 -19.456 28.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.083 4.083 3 C -0.196 4.196 4 C -0.190 4.190 5 C -0.008 4.008 6 N -0.269 5.269 7 C 0.310 3.690 8 O -0.381 6.381 9 C -0.186 4.186 10 C -0.143 4.143 11 C -0.147 4.147 12 C -0.016 4.016 13 C -0.559 4.559 14 H 0.072 0.928 15 C -0.145 4.145 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C 0.136 3.864 22 C -0.221 4.221 23 C -0.083 4.083 24 C -0.228 4.228 25 C -0.036 4.036 26 N -0.225 5.225 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.126 0.874 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.070 0.930 47 H 0.189 0.811 48 H 0.152 0.848 49 H 0.149 0.851 50 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 20.188 0.443 -19.047 27.759 hybrid contribution -0.814 -0.125 0.270 0.867 sum 19.374 0.318 -18.777 26.982 Atomic orbital electron populations 1.22161 0.94410 1.02015 1.02383 1.20910 0.96047 0.95786 0.95579 1.21806 1.01118 0.94412 1.02280 1.21947 1.01577 0.99674 0.95813 1.21913 1.00647 0.79584 0.98692 1.45637 1.29836 1.09525 1.41876 1.21377 0.78781 0.91329 0.77477 1.90542 1.66657 1.21136 1.59770 1.22217 0.98890 0.96764 1.00739 1.21506 0.95841 0.99098 0.97840 1.21640 0.98166 0.96360 0.98537 1.19084 0.92580 0.96018 0.93955 1.21236 1.16119 0.93042 1.25548 0.92795 1.25035 0.97302 0.95338 0.96845 1.69961 1.30245 1.16740 1.36528 0.86677 0.79685 0.82199 0.79530 1.20272 1.21321 1.20279 1.18351 0.89290 0.87862 0.90912 1.22840 1.04232 0.93405 1.01635 1.21546 0.94390 0.98932 0.93402 1.21992 0.97591 0.99103 1.04159 1.22369 0.98584 0.88903 0.93772 1.67129 1.08243 1.34859 1.12292 0.91596 0.92336 0.92568 0.92363 0.92236 0.92182 0.93189 0.93471 0.91619 0.89068 0.88766 0.88787 0.87358 0.91547 0.91793 0.93405 0.93378 0.96586 0.96609 0.92973 0.81067 0.84809 0.85131 0.82741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 6.92 37.16 0.26 -1.16 16 2 C -0.08 -0.70 0.85 -154.51 -0.13 -0.83 16 3 C -0.14 -0.97 8.45 37.16 0.31 -0.65 16 4 C -0.13 -1.24 7.00 37.16 0.26 -0.98 16 5 C 0.11 1.07 4.36 -4.04 -0.02 1.06 16 6 N -0.54 -6.55 2.19 -115.37 -0.25 -6.81 16 7 C 0.52 7.27 6.33 -10.98 -0.07 7.20 16 8 O -0.51 -8.59 12.68 5.57 0.07 -8.52 16 9 C -0.15 -1.91 4.21 -27.88 -0.12 -2.03 16 10 C -0.10 -1.80 4.52 -26.74 -0.12 -1.92 16 11 C -0.11 -2.19 5.15 -26.73 -0.14 -2.32 16 12 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 13 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 14 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 17 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 C 0.36 4.59 5.15 -154.71 -0.80 3.79 16 22 C -0.20 -2.56 8.88 -39.24 -0.35 -2.91 16 23 C -0.06 -0.57 10.17 -39.31 -0.40 -0.97 16 24 C -0.21 -1.77 10.11 -39.42 -0.40 -2.17 16 25 C 0.12 1.09 11.18 -17.57 -0.20 0.90 16 26 N -0.51 -5.69 6.99 -12.37 -0.09 -5.78 16 27 H 0.07 0.57 7.04 -51.93 -0.37 0.21 16 28 H 0.06 0.52 8.11 -51.93 -0.42 0.10 16 29 H 0.06 0.61 5.49 -51.93 -0.28 0.33 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.56 5.52 -51.93 -0.29 0.27 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.61 7.56 -51.93 -0.39 0.22 16 36 H 0.09 0.75 6.01 -51.93 -0.31 0.44 16 37 H 0.09 0.89 7.55 -51.93 -0.39 0.50 16 38 H 0.09 1.05 6.88 -51.93 -0.36 0.69 16 39 H 0.11 1.25 4.55 -51.93 -0.24 1.02 16 40 H 0.07 1.21 8.05 -51.93 -0.42 0.79 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 47 H 0.17 2.51 5.09 -53.19 -0.27 2.24 16 48 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 49 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 50 H 0.16 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 384.15 15.07 5.79 5.79 Total: -1.00 -32.70 384.15 -9.57 -42.27 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -8.35 Total: -0.83 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -2.45 Total: -16.25 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.40 Total: -39.23 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.07 Total: -8.52 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.70 -9.57 -42.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891494708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.854 kcal (2) G-P(sol) polarization free energy of solvation -32.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds