Wall clock time and date at job start Tue Mar 31 2020 12:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46951 * 2 1 4 4 C 1.53003 * 109.47595 * 240.00001 * 2 1 3 5 5 C 1.53001 * 109.47156 * 119.99829 * 2 1 3 6 6 N 1.46504 * 109.46987 * 58.17210 * 5 2 1 7 7 C 1.34779 * 120.00041 * 259.97409 * 6 5 2 8 8 O 1.21270 * 120.00326 * 188.58377 * 7 6 5 9 9 C 1.50710 * 119.99885 * 8.58615 * 7 6 5 10 10 C 1.52997 * 109.47026 * 184.79564 * 9 7 6 11 11 C 1.52993 * 109.47020 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47428 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47434 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00118 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99684 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00411 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99610 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47173 * 60.00446 * 17 15 13 19 19 H 1.48502 * 109.47165 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47339 * 300.00006 * 17 15 13 21 21 C 1.39399 * 120.00163 * 79.97681 * 6 5 2 22 22 C 1.39040 * 119.69936 * 193.29000 * 21 6 5 23 23 C 1.38359 * 119.10292 * 179.97438 * 22 21 6 24 24 C 1.38838 * 118.49235 * 359.97438 * 23 22 21 25 25 C 1.38072 * 119.31460 * 0.26268 * 24 23 22 26 26 N 1.31935 * 120.84513 * 359.49080 * 25 24 23 27 27 H 1.08996 * 109.47333 * 310.33373 * 1 2 3 28 28 H 1.09002 * 109.46688 * 70.33409 * 1 2 3 29 29 H 1.09000 * 109.46850 * 190.32869 * 1 2 3 30 30 H 1.09002 * 109.47208 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47156 * 299.99416 * 3 2 1 32 32 H 1.09001 * 109.46910 * 60.00264 * 3 2 1 33 33 H 1.09001 * 109.47141 * 300.00144 * 4 2 1 34 34 H 1.09002 * 109.46845 * 60.00026 * 4 2 1 35 35 H 1.09002 * 109.47046 * 180.02562 * 4 2 1 36 36 H 1.09000 * 109.47149 * 298.17503 * 5 2 1 37 37 H 1.09001 * 109.47256 * 178.17224 * 5 2 1 38 38 H 1.09001 * 109.46988 * 304.79937 * 9 7 6 39 39 H 1.09005 * 109.46562 * 64.79633 * 9 7 6 40 40 H 1.09003 * 109.47323 * 300.00531 * 10 9 7 41 41 H 1.09005 * 109.46685 * 60.00339 * 10 9 7 42 42 H 1.09003 * 109.47490 * 300.00410 * 11 10 9 43 43 H 1.08997 * 109.47364 * 60.00320 * 11 10 9 44 44 H 1.09003 * 109.46855 * 300.00475 * 12 11 10 45 45 H 1.08997 * 109.46851 * 59.99682 * 12 11 10 46 46 H 0.97004 * 120.00091 * 179.97438 * 16 15 13 47 47 H 1.07995 * 120.44303 * 0.02562 * 22 21 6 48 48 H 1.07997 * 120.74980 * 179.97438 * 23 22 21 49 49 H 1.07997 * 120.34308 * 179.97438 * 24 23 22 50 50 H 1.07998 * 119.57385 * 179.74285 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 7 1.5160 -2.0892 1.2715 7 6 0.4518 -2.3907 2.0416 8 8 0.1134 -3.5467 2.1827 9 6 -0.3178 -1.2913 2.7274 10 6 -1.3928 -1.9054 3.6263 11 6 -2.1745 -0.7893 4.3220 12 6 -3.2491 -1.4034 5.2215 13 6 -4.0186 -0.3040 5.9072 14 1 -3.7668 0.7293 5.7199 15 6 -5.0449 -0.6175 6.7729 16 7 -5.3520 -1.8758 7.0006 17 14 -5.9992 0.7453 7.6224 18 1 -6.6430 1.6097 6.6008 19 1 -7.0422 0.1492 8.4955 20 1 -5.0709 1.5602 8.4466 21 6 2.1181 -3.0789 0.4962 22 6 1.4671 -4.2918 0.3004 23 6 2.0758 -5.2653 -0.4717 24 6 3.3196 -4.9908 -1.0242 25 6 3.9104 -3.7661 -0.7843 26 7 3.3039 -2.8551 -0.0475 27 1 -0.3634 0.6651 0.7833 28 1 -0.3633 0.3459 -0.9678 29 1 -0.3633 -1.0110 0.1843 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6768 -1.7489 -1.2493 34 1 1.6768 -0.2074 -2.1392 35 1 3.1301 -0.7216 -1.2489 36 1 1.7036 -0.1888 2.1389 37 1 3.1295 -0.7497 1.2330 38 1 0.3639 -0.6935 3.3325 39 1 -0.7902 -0.6564 1.9777 40 1 -2.0744 -2.5033 3.0212 41 1 -0.9203 -2.5403 4.3759 42 1 -1.4931 -0.1911 4.9270 43 1 -2.6469 -0.1548 3.5722 44 1 -3.9305 -2.0018 4.6168 45 1 -2.7763 -2.0377 5.9712 46 1 -6.0738 -2.0963 7.6100 47 1 0.4991 -4.4712 0.7444 48 1 1.5942 -6.2171 -0.6407 49 1 3.8218 -5.7292 -1.6314 50 1 4.8797 -3.5497 -1.2085 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891494708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:50 Heat of formation + Delta-G solvation = -21.865034 kcal Electronic energy + Delta-G solvation = -27352.472495 eV Core-core repulsion = 23765.011820 eV Total energy + Delta-G solvation = -3587.460676 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.46146 -40.28141 -38.74449 -36.75538 -35.55583 -34.66851 -33.33701 -32.21482 -30.83396 -28.47611 -28.10068 -27.48119 -27.35805 -25.08399 -24.31061 -23.33074 -21.77317 -21.09032 -19.74749 -18.62282 -18.36835 -18.12578 -17.65942 -17.22828 -16.53545 -16.32835 -16.11450 -15.75096 -15.35339 -15.08357 -14.90543 -14.71509 -14.52462 -14.45999 -13.93103 -13.82351 -13.63150 -13.49659 -13.32784 -12.98323 -12.94345 -12.82268 -12.60845 -12.48882 -12.38823 -12.32376 -12.15414 -11.99939 -11.69257 -11.55669 -11.35196 -11.30469 -11.16714 -11.09429 -10.82736 -10.63340 -10.53375 -10.39604 -9.10541 -8.17757 -6.29713 0.12042 0.34965 1.40990 1.42750 1.44797 1.52449 1.55186 2.42623 2.92221 3.15135 3.31165 3.59443 3.76101 3.82321 3.91374 3.97587 4.04959 4.07511 4.15851 4.30710 4.32202 4.41092 4.54367 4.57976 4.61830 4.69003 4.77217 4.78510 4.82915 4.89377 4.90713 4.93370 5.04791 5.08777 5.09878 5.15752 5.19354 5.31803 5.32845 5.34573 5.36747 5.38373 5.48939 5.50220 5.56966 5.78925 5.88808 5.89702 5.99796 6.26346 6.84628 6.88834 7.04820 7.39900 8.94281 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.018624 B = 0.002684 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.055639 B =10429.457623 C =11605.990305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.077 4.077 3 C -0.134 4.134 4 C -0.126 4.126 5 C 0.108 3.892 6 N -0.539 5.539 7 C 0.517 3.483 8 O -0.548 6.548 9 C -0.135 4.135 10 C -0.096 4.096 11 C -0.094 4.094 12 C 0.020 3.980 13 C -0.541 4.541 14 H 0.067 0.933 15 C -0.006 4.006 16 N -0.938 5.938 17 Si 0.968 3.032 18 H -0.264 1.264 19 H -0.286 1.286 20 H -0.264 1.264 21 C 0.345 3.655 22 C -0.229 4.229 23 C -0.062 4.062 24 C -0.197 4.197 25 C 0.118 3.882 26 N -0.514 5.514 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.034 0.966 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.027 0.973 34 H 0.050 0.950 35 H 0.066 0.934 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.122 0.878 39 H 0.128 0.872 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.063 0.937 43 H 0.061 0.939 44 H -0.015 1.015 45 H -0.015 1.015 46 H 0.262 0.738 47 H 0.146 0.854 48 H 0.150 0.850 49 H 0.165 0.835 50 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.087 2.697 -20.589 30.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.078 4.078 3 C -0.192 4.192 4 C -0.183 4.183 5 C -0.013 4.013 6 N -0.262 5.262 7 C 0.309 3.691 8 O -0.425 6.425 9 C -0.174 4.174 10 C -0.134 4.134 11 C -0.132 4.132 12 C -0.017 4.017 13 C -0.579 4.579 14 H 0.085 0.915 15 C -0.203 4.203 16 N -0.579 5.579 17 Si 0.792 3.208 18 H -0.189 1.189 19 H -0.212 1.212 20 H -0.189 1.189 21 C 0.117 3.883 22 C -0.252 4.252 23 C -0.088 4.088 24 C -0.217 4.217 25 C -0.040 4.040 26 N -0.229 5.229 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.053 0.947 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.125 0.875 37 H 0.116 0.884 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.003 0.997 45 H 0.003 0.997 46 H 0.071 0.929 47 H 0.163 0.837 48 H 0.168 0.832 49 H 0.183 0.817 50 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 22.148 2.849 -20.206 30.115 hybrid contribution -1.339 -0.973 0.526 1.737 sum 20.808 1.876 -19.679 28.702 Atomic orbital electron populations 1.22163 0.95027 1.00909 1.02947 1.20877 0.95446 0.96743 0.94724 1.21774 1.01558 0.92914 1.02909 1.21870 1.01515 0.98475 0.96451 1.22153 1.00859 0.78398 0.99847 1.45581 1.29099 1.10510 1.41052 1.21451 0.79226 0.90827 0.77621 1.90550 1.67919 1.22652 1.61381 1.22094 0.98079 0.96516 1.00681 1.21277 0.96448 0.97937 0.97712 1.21430 0.96839 0.96918 0.98005 1.19038 0.93607 0.95251 0.93822 1.21728 1.16470 0.94016 1.25705 0.91504 1.26074 0.98549 0.98015 0.97699 1.70124 1.31021 1.19309 1.37415 0.85464 0.78095 0.78804 0.78468 1.18901 1.21183 1.18888 1.18433 0.90081 0.87951 0.91789 1.22751 1.03970 0.94957 1.03493 1.21827 0.95212 0.99001 0.92811 1.22367 0.96557 0.99608 1.03202 1.23068 0.99562 0.88675 0.92702 1.67190 1.07569 1.35552 1.12584 0.90571 0.92022 0.94676 0.91661 0.91876 0.91308 0.95394 0.93058 0.91483 0.87545 0.88445 0.86003 0.85466 0.93482 0.93558 0.91869 0.91981 0.99707 0.99680 0.92885 0.83694 0.83209 0.81711 0.79296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 6.92 71.98 0.50 -2.15 16 2 C -0.08 -1.18 0.85 -52.18 -0.04 -1.23 16 3 C -0.13 -1.49 8.45 71.98 0.61 -0.88 16 4 C -0.13 -2.18 7.00 71.98 0.50 -1.68 16 5 C 0.11 1.87 4.36 86.38 0.38 2.25 16 6 N -0.54 -12.95 2.19 -637.32 -1.40 -14.35 16 7 C 0.52 14.88 6.33 87.66 0.55 15.43 16 8 O -0.55 -19.93 12.68 -3.00 -0.04 -19.97 16 9 C -0.13 -3.42 4.21 29.85 0.13 -3.29 16 10 C -0.10 -3.39 4.52 30.59 0.14 -3.25 16 11 C -0.09 -3.77 5.15 30.59 0.16 -3.61 16 12 C 0.02 1.08 4.97 29.85 0.15 1.23 16 13 C -0.54 -31.12 9.11 25.60 0.23 -30.89 16 14 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 15 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 16 N -0.94 -58.94 13.29 21.45 0.28 -58.65 16 17 Si 0.97 44.58 29.54 68.60 2.03 46.61 16 18 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 19 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 20 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 21 C 0.34 8.77 5.15 132.92 0.68 9.45 16 22 C -0.23 -6.19 8.88 22.49 0.20 -5.99 16 23 C -0.06 -1.25 10.17 22.44 0.23 -1.02 16 24 C -0.20 -2.92 10.11 22.37 0.23 -2.69 16 25 C 0.12 1.85 11.18 84.64 0.95 2.79 16 26 N -0.51 -10.85 6.99 -193.04 -1.35 -12.19 16 27 H 0.08 1.14 7.04 -2.39 -0.02 1.12 16 28 H 0.06 1.01 8.11 -2.39 -0.02 0.99 16 29 H 0.03 0.76 5.49 -2.39 -0.01 0.74 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.03 0.61 5.52 -2.39 -0.01 0.60 16 34 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.07 1.13 7.56 -2.39 -0.02 1.11 16 36 H 0.11 1.48 6.01 -2.39 -0.01 1.46 16 37 H 0.10 1.65 7.55 -2.39 -0.02 1.63 16 38 H 0.12 2.43 6.88 -2.39 -0.02 2.41 16 39 H 0.13 2.76 4.55 -2.38 -0.01 2.75 16 40 H 0.05 1.82 8.05 -2.39 -0.02 1.80 16 41 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 42 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 44 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 45 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 46 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 47 H 0.15 4.70 5.09 -14.06 -0.07 4.63 16 48 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 49 H 0.17 1.29 8.06 -2.91 -0.02 1.26 16 50 H 0.19 1.56 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -74.53 384.15 6.43 -68.10 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.85 Total: 15.87 kcal Atomic # 6 Polarization: -31.46 SS G_CDS: 6.05 Total: -25.42 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -2.46 Total: -85.20 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.04 Total: -19.97 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -74.53 6.43 -68.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891494708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.235 kcal (2) G-P(sol) polarization free energy of solvation -74.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds