Wall clock time and date at job start Tue Mar 31 2020 11:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.47036 * 2 1 4 4 C 1.52999 * 109.46836 * 240.00523 * 2 1 3 5 5 C 1.52995 * 109.47405 * 120.00499 * 2 1 3 6 6 H 1.08997 * 109.49003 * 203.99773 * 5 2 1 7 7 O 1.42906 * 109.48013 * 324.02887 * 5 2 1 8 8 C 1.42903 * 114.09699 * 181.13865 * 7 5 2 9 9 C 1.53099 * 109.41807 * 298.84298 * 8 7 5 10 10 C 1.53179 * 109.15763 * 57.60577 * 9 8 7 11 11 C 1.53096 * 109.48063 * 83.96835 * 5 2 1 12 12 H 1.09007 * 109.57068 * 62.47289 * 11 5 2 13 13 C 1.52996 * 109.52468 * 302.31862 * 11 5 2 14 14 N 1.46496 * 109.47165 * 185.42460 * 13 11 5 15 15 C 1.38825 * 120.00277 * 179.97438 * 14 13 11 16 16 C 1.39801 * 119.58184 * 0.26898 * 15 14 13 17 17 C 1.38593 * 119.48598 * 180.25429 * 16 15 14 18 18 C 1.38390 * 118.68481 * 359.48261 * 17 16 15 19 19 C 1.40547 * 119.14701 * 0.25492 * 18 17 16 20 20 C 1.41323 * 119.78363 * 180.02562 * 19 18 17 21 21 H 1.07999 * 119.99884 * 359.97438 * 20 19 18 22 22 C 1.40026 * 119.99762 * 179.97438 * 20 19 18 23 23 N 1.30739 * 120.00186 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99461 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47351 * 60.00100 * 24 22 20 26 26 H 1.48504 * 109.46957 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.46961 * 299.99709 * 24 22 20 28 28 N 1.31951 * 119.58699 * 179.97438 * 15 14 13 29 29 H 1.08997 * 109.46669 * 307.11184 * 1 2 3 30 30 H 1.09000 * 109.47289 * 67.11329 * 1 2 3 31 31 H 1.08998 * 109.46778 * 187.11852 * 1 2 3 32 32 H 1.09001 * 109.47068 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.47231 * 300.00760 * 3 2 1 34 34 H 1.09002 * 109.46504 * 60.00445 * 3 2 1 35 35 H 1.08999 * 109.47408 * 299.99956 * 4 2 1 36 36 H 1.09002 * 109.47279 * 59.99566 * 4 2 1 37 37 H 1.09001 * 109.47313 * 179.97438 * 4 2 1 38 38 H 1.09002 * 109.48090 * 178.86090 * 8 7 5 39 39 H 1.08999 * 109.48063 * 58.82407 * 8 7 5 40 40 H 1.08998 * 109.51876 * 297.70723 * 9 8 7 41 41 H 1.08991 * 109.57297 * 177.54035 * 9 8 7 42 42 H 1.09004 * 109.53694 * 183.15126 * 10 9 8 43 43 H 1.09000 * 109.54809 * 62.89407 * 10 9 8 44 44 H 1.08999 * 109.47625 * 65.42366 * 13 11 5 45 45 H 1.09006 * 109.46952 * 305.41887 * 13 11 5 46 46 H 0.96998 * 120.00374 * 359.97438 * 14 13 11 47 47 H 1.08000 * 120.25522 * 0.02562 * 16 15 14 48 48 H 1.08006 * 120.65608 * 179.75852 * 17 16 15 49 49 H 1.07998 * 120.42322 * 180.22828 * 18 17 16 50 50 H 0.96995 * 119.99822 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0401 -0.7213 1.2491 6 1 3.0464 -0.3744 1.4840 7 8 1.1710 -0.4425 2.3487 8 6 1.5723 -1.0502 3.5783 9 6 1.5809 -2.5724 3.4147 10 6 2.5214 -2.9493 2.2659 11 6 2.0674 -2.2303 0.9920 12 1 2.7629 -2.4502 0.1820 13 6 0.6662 -2.7087 0.6065 14 7 0.6643 -4.1688 0.4871 15 6 -0.5040 -4.8357 0.1445 16 6 -1.6725 -4.1049 -0.0902 17 6 -2.8390 -4.7732 -0.4270 18 6 -2.8076 -6.1528 -0.5317 19 6 -1.6005 -6.8304 -0.2890 20 6 -1.5531 -8.2391 -0.3926 21 1 -2.4427 -8.7913 -0.6572 22 6 -0.3526 -8.9187 -0.1523 23 7 0.7244 -8.2502 0.1674 24 14 -0.2903 -10.7807 -0.2887 25 1 -0.6640 -11.1890 -1.6666 26 1 1.0851 -11.2533 0.0122 27 1 -1.2422 -11.3802 0.6807 28 7 -0.4963 -6.1510 0.0387 29 1 -0.3632 0.6201 0.8195 30 1 -0.3634 0.3997 -0.9467 31 1 -0.3633 -1.0197 0.1274 32 1 3.1301 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9562 0.8901 35 1 1.6767 -1.7488 -1.2494 36 1 1.6766 -0.2073 -2.1393 37 1 3.1300 -0.7208 -1.2496 38 1 0.8720 -0.7732 4.3662 39 1 2.5725 -0.7076 3.8436 40 1 0.5728 -2.9201 3.1890 41 1 1.9285 -3.0368 4.3374 42 1 2.4895 -4.0273 2.1074 43 1 3.5388 -2.6459 2.5130 44 1 0.3806 -2.2658 -0.3476 45 1 -0.0452 -2.4061 1.3751 46 1 1.4794 -4.6696 0.6475 47 1 -1.6670 -3.0282 -0.0061 48 1 -3.7533 -4.2278 -0.6086 49 1 -3.6994 -6.7016 -0.7961 50 1 1.5560 -8.7210 0.3335 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116636028.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:01 Heat of formation + Delta-G solvation = -12.193551 kcal Electronic energy + Delta-G solvation = -28366.355716 eV Core-core repulsion = 24779.314427 eV Total energy + Delta-G solvation = -3587.041289 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.62646 -38.10730 -36.48028 -35.49237 -33.60793 -32.64504 -30.72020 -30.20437 -28.65381 -27.63785 -27.32728 -25.38035 -25.20237 -24.75489 -22.81428 -21.38337 -20.52799 -19.23605 -18.76889 -17.30058 -16.60955 -16.39034 -15.89971 -15.41733 -15.09999 -14.79616 -14.44858 -14.04423 -13.93303 -13.77347 -13.54147 -13.24626 -12.90795 -12.85544 -12.64382 -12.56930 -12.22131 -11.97147 -11.89039 -11.79389 -11.51402 -11.33559 -11.12974 -11.03070 -10.98303 -10.96358 -10.79938 -10.57513 -10.49270 -10.38800 -10.33377 -9.90581 -9.80704 -9.42923 -9.28850 -8.77517 -7.84621 -7.45249 -6.42193 -6.28300 -4.42747 2.93032 3.11885 3.14950 3.29766 3.35098 3.71085 4.01176 4.26695 4.54843 4.72483 4.85628 4.89335 4.92986 4.97617 5.04035 5.13999 5.17917 5.37866 5.47698 5.51548 5.57187 5.65325 5.71238 5.73273 5.79060 5.87937 5.91158 5.93245 5.98607 6.06980 6.09436 6.15142 6.18155 6.21629 6.26040 6.33248 6.39082 6.49055 6.54380 6.69490 6.92749 6.95270 7.01333 7.26090 7.30012 7.66333 7.87716 7.98832 8.21537 8.43754 8.75265 8.85693 9.18426 10.29965 10.45490 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.017992 B = 0.003517 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.892006 B = 7959.803519 C = 8505.848163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.059 4.059 3 C -0.139 4.139 4 C -0.155 4.155 5 C 0.111 3.889 6 H 0.057 0.943 7 O -0.370 6.370 8 C 0.063 3.937 9 C -0.157 4.157 10 C -0.117 4.117 11 C -0.130 4.130 12 H 0.086 0.914 13 C 0.140 3.860 14 N -0.739 5.739 15 C 0.412 3.588 16 C -0.365 4.365 17 C -0.032 4.032 18 C -0.318 4.318 19 C 0.294 3.706 20 C -0.437 4.437 21 H 0.081 0.919 22 C 0.073 3.927 23 N -0.717 5.717 24 Si 0.904 3.096 25 H -0.266 1.266 26 H -0.279 1.279 27 H -0.266 1.266 28 N -0.532 5.532 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.090 0.910 39 H 0.044 0.956 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.060 0.940 46 H 0.392 0.608 47 H 0.089 0.911 48 H 0.091 0.909 49 H 0.093 0.907 50 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.676 14.664 3.255 16.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.059 4.059 3 C -0.196 4.196 4 C -0.212 4.212 5 C 0.052 3.948 6 H 0.075 0.925 7 O -0.289 6.289 8 C -0.014 4.014 9 C -0.195 4.195 10 C -0.155 4.155 11 C -0.149 4.149 12 H 0.104 0.896 13 C 0.015 3.985 14 N -0.376 5.376 15 C 0.172 3.828 16 C -0.391 4.391 17 C -0.056 4.056 18 C -0.341 4.341 19 C 0.166 3.834 20 C -0.469 4.469 21 H 0.099 0.901 22 C -0.152 4.152 23 N -0.339 5.339 24 Si 0.728 3.272 25 H -0.190 1.190 26 H -0.204 1.204 27 H -0.191 1.191 28 N -0.254 5.254 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.062 0.938 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.078 0.922 46 H 0.227 0.773 47 H 0.107 0.893 48 H 0.109 0.891 49 H 0.111 0.889 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.414 14.483 3.435 16.629 hybrid contribution -0.142 -0.713 -0.040 0.728 sum 7.272 13.770 3.395 15.938 Atomic orbital electron populations 1.22184 0.93539 1.04257 1.01211 1.20531 0.97189 0.95043 0.93113 1.21892 1.00328 0.95465 1.01936 1.22195 1.00797 1.01820 0.96394 1.22058 0.92961 0.92788 0.86958 0.92513 1.87944 1.51263 1.72369 1.17313 1.22540 0.99673 0.92447 0.86754 1.22183 1.01879 0.96462 0.98943 1.21602 0.98205 1.01425 0.94231 1.22083 0.98557 0.95687 0.98606 0.89594 1.21598 0.95158 0.81217 1.00521 1.44293 1.10265 1.04297 1.78783 1.18525 0.84873 0.90076 0.89314 1.20613 0.94588 0.97679 1.26239 1.20591 0.95678 0.94166 0.95209 1.21516 0.99304 0.93955 1.19361 1.18178 0.85711 0.93058 0.86413 1.19533 0.96090 0.90581 1.40694 0.90051 1.26022 0.95441 1.00105 0.93636 1.70144 0.99738 1.36404 1.27615 0.86464 0.78034 0.82933 0.79751 1.19045 1.20411 1.19061 1.68219 1.29256 1.03231 1.24645 0.92032 0.93297 0.90191 0.93081 0.92607 0.92316 0.90656 0.92323 0.92772 0.89190 0.93772 0.90223 0.91287 0.90612 0.92285 0.91489 0.92164 0.77261 0.89277 0.89069 0.88852 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 7.45 37.16 0.28 -1.60 16 2 C -0.06 -0.64 0.68 -154.51 -0.11 -0.74 16 3 C -0.14 -1.30 8.35 37.16 0.31 -0.99 16 4 C -0.16 -1.67 7.18 37.16 0.27 -1.40 16 5 C 0.11 1.26 2.08 -26.68 -0.06 1.21 16 6 H 0.06 0.60 7.91 -51.93 -0.41 0.19 16 7 O -0.37 -4.59 8.36 -35.23 -0.29 -4.89 16 8 C 0.06 0.68 6.84 37.21 0.25 0.93 16 9 C -0.16 -1.92 5.77 -26.59 -0.15 -2.07 16 10 C -0.12 -1.45 5.34 -26.55 -0.14 -1.59 16 11 C -0.13 -1.65 1.80 -90.48 -0.16 -1.81 16 12 H 0.09 1.06 6.62 -51.93 -0.34 0.72 16 13 C 0.14 2.20 1.81 -4.05 -0.01 2.19 16 14 N -0.74 -14.67 5.39 -60.40 -0.33 -15.00 16 15 C 0.41 10.10 7.65 -155.32 -1.19 8.92 16 16 C -0.37 -8.56 9.34 -38.87 -0.36 -8.92 16 17 C -0.03 -0.76 10.15 -39.39 -0.40 -1.16 16 18 C -0.32 -8.21 9.83 -38.66 -0.38 -8.59 16 19 C 0.29 8.28 6.55 -85.00 -0.56 7.72 16 20 C -0.44 -11.99 9.14 -37.74 -0.34 -12.34 16 21 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 22 C 0.07 1.88 5.50 -17.35 -0.10 1.79 16 23 N -0.72 -19.15 11.46 55.55 0.64 -18.51 16 24 Si 0.90 18.92 29.56 -169.99 -5.02 13.89 16 25 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 26 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 27 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 28 N -0.53 -14.76 7.89 -10.33 -0.08 -14.85 16 29 H 0.06 0.76 7.62 -51.93 -0.40 0.36 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 1.11 3.87 -51.93 -0.20 0.91 16 32 H 0.05 0.43 8.12 -51.93 -0.42 0.01 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.95 4.54 -51.93 -0.24 0.71 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.05 0.52 8.12 -51.93 -0.42 0.10 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 1.19 6.74 -51.93 -0.35 0.84 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 1.07 6.49 -51.93 -0.34 0.74 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 1.08 3.74 -51.93 -0.19 0.88 16 45 H 0.06 1.03 5.55 -51.93 -0.29 0.74 16 46 H 0.39 7.81 7.09 -40.82 -0.29 7.52 16 47 H 0.09 1.88 6.68 -52.49 -0.35 1.53 16 48 H 0.09 1.86 8.06 -52.48 -0.42 1.44 16 49 H 0.09 2.25 8.06 -52.49 -0.42 1.82 16 50 H 0.27 6.54 8.29 -40.82 -0.34 6.20 16 LS Contribution 369.91 15.07 5.57 5.57 Total: -1.00 -29.42 369.91 -10.37 -39.80 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -8.01 Total: 12.44 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: -2.85 Total: -18.46 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: 0.23 Total: -48.36 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: -0.29 Total: -4.89 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.02 Total: 13.89 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.42 -10.37 -39.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636028.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.602 kcal (2) G-P(sol) polarization free energy of solvation -29.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds