Wall clock time and date at job start Tue Mar 31 2020 11:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.47036 * 2 1 4 4 C 1.52999 * 109.46836 * 240.00523 * 2 1 3 5 5 C 1.52995 * 109.47405 * 120.00499 * 2 1 3 6 6 H 1.08997 * 109.49003 * 203.99773 * 5 2 1 7 7 O 1.42906 * 109.48013 * 324.02887 * 5 2 1 8 8 C 1.42903 * 114.09699 * 181.13865 * 7 5 2 9 9 C 1.53099 * 109.41807 * 298.84298 * 8 7 5 10 10 C 1.53179 * 109.15763 * 57.60577 * 9 8 7 11 11 C 1.53096 * 109.48063 * 83.96835 * 5 2 1 12 12 H 1.09007 * 109.57068 * 62.47289 * 11 5 2 13 13 C 1.52996 * 109.52468 * 302.31862 * 11 5 2 14 14 N 1.46496 * 109.47165 * 185.42460 * 13 11 5 15 15 C 1.38825 * 120.00277 * 179.97438 * 14 13 11 16 16 C 1.39801 * 119.58184 * 0.26898 * 15 14 13 17 17 C 1.38593 * 119.48598 * 180.25429 * 16 15 14 18 18 C 1.38390 * 118.68481 * 359.48261 * 17 16 15 19 19 C 1.40547 * 119.14701 * 0.25492 * 18 17 16 20 20 C 1.41323 * 119.78363 * 180.02562 * 19 18 17 21 21 H 1.07999 * 119.99884 * 359.97438 * 20 19 18 22 22 C 1.40026 * 119.99762 * 179.97438 * 20 19 18 23 23 N 1.30739 * 120.00186 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99461 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47351 * 60.00100 * 24 22 20 26 26 H 1.48504 * 109.46957 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.46961 * 299.99709 * 24 22 20 28 28 N 1.31951 * 119.58699 * 179.97438 * 15 14 13 29 29 H 1.08997 * 109.46669 * 307.11184 * 1 2 3 30 30 H 1.09000 * 109.47289 * 67.11329 * 1 2 3 31 31 H 1.08998 * 109.46778 * 187.11852 * 1 2 3 32 32 H 1.09001 * 109.47068 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.47231 * 300.00760 * 3 2 1 34 34 H 1.09002 * 109.46504 * 60.00445 * 3 2 1 35 35 H 1.08999 * 109.47408 * 299.99956 * 4 2 1 36 36 H 1.09002 * 109.47279 * 59.99566 * 4 2 1 37 37 H 1.09001 * 109.47313 * 179.97438 * 4 2 1 38 38 H 1.09002 * 109.48090 * 178.86090 * 8 7 5 39 39 H 1.08999 * 109.48063 * 58.82407 * 8 7 5 40 40 H 1.08998 * 109.51876 * 297.70723 * 9 8 7 41 41 H 1.08991 * 109.57297 * 177.54035 * 9 8 7 42 42 H 1.09004 * 109.53694 * 183.15126 * 10 9 8 43 43 H 1.09000 * 109.54809 * 62.89407 * 10 9 8 44 44 H 1.08999 * 109.47625 * 65.42366 * 13 11 5 45 45 H 1.09006 * 109.46952 * 305.41887 * 13 11 5 46 46 H 0.96998 * 120.00374 * 359.97438 * 14 13 11 47 47 H 1.08000 * 120.25522 * 0.02562 * 16 15 14 48 48 H 1.08006 * 120.65608 * 179.75852 * 17 16 15 49 49 H 1.07998 * 120.42322 * 180.22828 * 18 17 16 50 50 H 0.96995 * 119.99822 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0401 -0.7213 1.2491 6 1 3.0464 -0.3744 1.4840 7 8 1.1710 -0.4425 2.3487 8 6 1.5723 -1.0502 3.5783 9 6 1.5809 -2.5724 3.4147 10 6 2.5214 -2.9493 2.2659 11 6 2.0674 -2.2303 0.9920 12 1 2.7629 -2.4502 0.1820 13 6 0.6662 -2.7087 0.6065 14 7 0.6643 -4.1688 0.4871 15 6 -0.5040 -4.8357 0.1445 16 6 -1.6725 -4.1049 -0.0902 17 6 -2.8390 -4.7732 -0.4270 18 6 -2.8076 -6.1528 -0.5317 19 6 -1.6005 -6.8304 -0.2890 20 6 -1.5531 -8.2391 -0.3926 21 1 -2.4427 -8.7913 -0.6572 22 6 -0.3526 -8.9187 -0.1523 23 7 0.7244 -8.2502 0.1674 24 14 -0.2903 -10.7807 -0.2887 25 1 -0.6640 -11.1890 -1.6666 26 1 1.0851 -11.2533 0.0122 27 1 -1.2422 -11.3802 0.6807 28 7 -0.4963 -6.1510 0.0387 29 1 -0.3632 0.6201 0.8195 30 1 -0.3634 0.3997 -0.9467 31 1 -0.3633 -1.0197 0.1274 32 1 3.1301 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9562 0.8901 35 1 1.6767 -1.7488 -1.2494 36 1 1.6766 -0.2073 -2.1393 37 1 3.1300 -0.7208 -1.2496 38 1 0.8720 -0.7732 4.3662 39 1 2.5725 -0.7076 3.8436 40 1 0.5728 -2.9201 3.1890 41 1 1.9285 -3.0368 4.3374 42 1 2.4895 -4.0273 2.1074 43 1 3.5388 -2.6459 2.5130 44 1 0.3806 -2.2658 -0.3476 45 1 -0.0452 -2.4061 1.3751 46 1 1.4794 -4.6696 0.6475 47 1 -1.6670 -3.0282 -0.0061 48 1 -3.7533 -4.2278 -0.6086 49 1 -3.6994 -6.7016 -0.7961 50 1 1.5560 -8.7210 0.3335 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116636028.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:00 Heat of formation + Delta-G solvation = -27.528097 kcal Electronic energy + Delta-G solvation = -28367.020672 eV Core-core repulsion = 24779.314427 eV Total energy + Delta-G solvation = -3587.706244 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.64386 -39.96928 -37.39150 -36.91360 -35.35236 -34.09303 -32.31313 -31.69458 -30.31434 -28.59480 -28.23631 -27.28781 -26.39403 -25.76354 -23.91339 -23.24325 -22.30282 -20.32822 -19.76989 -19.19315 -18.08241 -17.47463 -17.00393 -16.82531 -16.52300 -16.17452 -16.07621 -15.59369 -15.11485 -14.88159 -14.62777 -14.56608 -14.46032 -14.10137 -14.01432 -13.73925 -13.49541 -13.30712 -13.02378 -12.88218 -12.79443 -12.73400 -12.60576 -12.44504 -12.29814 -12.20025 -12.00478 -11.91302 -11.75679 -11.72934 -11.43554 -11.33376 -11.17216 -10.80880 -10.60313 -10.24883 -9.80923 -9.42958 -8.24121 -8.21619 -6.46986 1.08286 1.35810 1.41258 1.52985 1.59882 2.25482 2.64997 2.90001 2.93958 3.61595 3.74807 3.86772 3.94061 4.06762 4.07552 4.11089 4.17046 4.24975 4.39422 4.47203 4.50818 4.60453 4.65069 4.69882 4.73763 4.81367 4.84688 4.87262 4.92540 4.95958 4.98939 5.01247 5.03825 5.10579 5.11098 5.12340 5.19512 5.21886 5.26970 5.37261 5.37905 5.43074 5.54922 5.58757 5.73742 5.97732 6.09288 6.23681 6.37461 6.59055 6.85572 6.97507 7.25139 8.36241 8.52509 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.017992 B = 0.003517 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.892006 B = 7959.803519 C = 8505.848163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.058 4.058 3 C -0.134 4.134 4 C -0.153 4.153 5 C 0.114 3.886 6 H 0.077 0.923 7 O -0.384 6.384 8 C 0.063 3.937 9 C -0.155 4.155 10 C -0.116 4.116 11 C -0.123 4.123 12 H 0.092 0.908 13 C 0.147 3.853 14 N -0.730 5.730 15 C 0.397 3.603 16 C -0.367 4.367 17 C -0.030 4.030 18 C -0.345 4.345 19 C 0.260 3.740 20 C -0.474 4.474 21 H 0.085 0.915 22 C 0.028 3.972 23 N -0.751 5.751 24 Si 0.985 3.015 25 H -0.260 1.260 26 H -0.268 1.268 27 H -0.261 1.261 28 N -0.563 5.563 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.099 0.901 39 H 0.067 0.933 40 H 0.045 0.955 41 H 0.079 0.921 42 H 0.051 0.949 43 H 0.084 0.916 44 H 0.068 0.932 45 H 0.047 0.953 46 H 0.390 0.610 47 H 0.111 0.889 48 H 0.126 0.874 49 H 0.101 0.899 50 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.975 15.910 3.460 18.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.058 4.058 3 C -0.191 4.191 4 C -0.210 4.210 5 C 0.056 3.944 6 H 0.095 0.905 7 O -0.303 6.303 8 C -0.013 4.013 9 C -0.192 4.192 10 C -0.154 4.154 11 C -0.142 4.142 12 H 0.110 0.890 13 C 0.024 3.976 14 N -0.366 5.366 15 C 0.156 3.844 16 C -0.393 4.393 17 C -0.054 4.054 18 C -0.368 4.368 19 C 0.133 3.867 20 C -0.506 4.506 21 H 0.103 0.897 22 C -0.194 4.194 23 N -0.373 5.373 24 Si 0.805 3.195 25 H -0.184 1.184 26 H -0.192 1.192 27 H -0.185 1.185 28 N -0.286 5.286 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.117 0.883 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.098 0.902 42 H 0.070 0.930 43 H 0.102 0.898 44 H 0.086 0.914 45 H 0.065 0.935 46 H 0.225 0.775 47 H 0.129 0.871 48 H 0.144 0.856 49 H 0.119 0.881 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.719 15.780 3.647 18.394 hybrid contribution -0.556 -0.965 -0.079 1.117 sum 8.163 14.815 3.568 17.287 Atomic orbital electron populations 1.22131 0.94768 1.02671 1.01364 1.20548 0.96151 0.96225 0.92890 1.21841 1.01140 0.93982 1.02161 1.22157 1.01725 1.00429 0.96657 1.22119 0.93877 0.91381 0.87066 0.90500 1.87938 1.51987 1.72406 1.17957 1.22635 1.01260 0.90953 0.86462 1.22146 0.99816 0.97950 0.99328 1.21600 0.99664 0.99922 0.94222 1.22060 0.96331 0.96947 0.98867 0.89025 1.21710 0.97243 0.78540 1.00139 1.44462 1.08817 1.05864 1.77456 1.18960 0.86689 0.89757 0.88998 1.20904 0.94289 0.98762 1.25332 1.20978 0.97074 0.93646 0.93735 1.21669 0.99069 0.95126 1.20960 1.18662 0.86822 0.94046 0.87168 1.19904 0.97292 0.91039 1.42320 0.89678 1.26927 0.94449 1.05398 0.92641 1.70242 1.00396 1.38702 1.27952 0.85237 0.78473 0.75898 0.79863 1.18441 1.19233 1.18513 1.68208 1.29708 1.04713 1.26006 0.92401 0.92701 0.92399 0.91736 0.91973 0.92557 0.92877 0.91727 0.91282 0.88259 0.91490 0.93655 0.90201 0.93002 0.89751 0.91396 0.93494 0.77510 0.87131 0.85605 0.88084 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 7.45 71.99 0.54 -2.99 16 2 C -0.06 -1.14 0.68 -52.18 -0.04 -1.18 16 3 C -0.13 -2.12 8.35 71.98 0.60 -1.52 16 4 C -0.15 -3.01 7.18 71.98 0.52 -2.49 16 5 C 0.11 2.35 2.08 30.62 0.06 2.41 16 6 H 0.08 1.34 7.91 -2.39 -0.02 1.32 16 7 O -0.38 -8.82 8.36 -148.98 -1.25 -10.07 16 8 C 0.06 1.24 6.84 72.02 0.49 1.74 16 9 C -0.15 -3.67 5.77 30.69 0.18 -3.50 16 10 C -0.12 -2.78 5.34 30.71 0.16 -2.62 16 11 C -0.12 -2.98 1.80 -10.71 -0.02 -3.00 16 12 H 0.09 2.14 6.62 -2.38 -0.02 2.12 16 13 C 0.15 4.67 1.81 86.38 0.16 4.82 16 14 N -0.73 -29.85 5.39 -344.99 -1.86 -31.70 16 15 C 0.40 20.04 7.65 133.42 1.02 21.06 16 16 C -0.37 -17.36 9.34 22.73 0.21 -17.14 16 17 C -0.03 -1.43 10.15 22.39 0.23 -1.20 16 18 C -0.35 -18.26 9.83 22.87 0.22 -18.04 16 19 C 0.26 15.24 6.55 40.18 0.26 15.51 16 20 C -0.47 -26.89 9.14 23.46 0.21 -26.68 16 21 H 0.09 4.54 7.85 -2.91 -0.02 4.52 16 22 C 0.03 1.45 5.50 85.29 0.47 1.92 16 23 N -0.75 -41.17 11.46 21.84 0.25 -40.92 16 24 Si 0.98 39.23 29.56 68.60 2.03 41.26 16 25 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 26 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 27 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 28 N -0.56 -32.49 7.89 -186.58 -1.47 -33.96 16 29 H 0.06 1.36 7.62 -2.39 -0.02 1.34 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.06 1.59 3.87 -2.39 -0.01 1.58 16 32 H 0.06 0.86 8.12 -2.39 -0.02 0.84 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.05 1.29 4.54 -2.39 -0.01 1.28 16 36 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 37 H 0.07 1.15 8.12 -2.39 -0.02 1.13 16 38 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.04 1.38 6.74 -2.39 -0.02 1.36 16 41 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.05 1.49 6.49 -2.38 -0.02 1.47 16 43 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.07 2.19 3.74 -2.39 -0.01 2.18 16 45 H 0.05 1.64 5.55 -2.38 -0.01 1.63 16 46 H 0.39 16.14 7.09 -92.71 -0.66 15.48 16 47 H 0.11 4.65 6.68 -2.91 -0.02 4.63 16 48 H 0.13 4.95 8.06 -2.91 -0.02 4.93 16 49 H 0.10 5.00 8.06 -2.91 -0.02 4.97 16 50 H 0.28 13.66 8.29 -92.71 -0.77 12.90 16 Total: -1.00 -65.81 369.91 3.27 -62.54 By element: Atomic # 1 Polarization: 45.48 SS G_CDS: 0.28 Total: 45.76 kcal Atomic # 6 Polarization: -38.19 SS G_CDS: 5.28 Total: -32.90 kcal Atomic # 7 Polarization: -103.51 SS G_CDS: -3.08 Total: -106.59 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -1.25 Total: -10.07 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Total: -65.81 3.27 -62.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636028.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.008 kcal (2) G-P(sol) polarization free energy of solvation -65.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds