Wall clock time and date at job start Tue Mar 31 2020 11:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47515 * 2 1 4 4 C 1.53000 * 109.47238 * 239.99965 * 2 1 3 5 5 C 1.53001 * 109.46998 * 120.00112 * 2 1 3 6 6 H 1.08995 * 109.47932 * 284.62190 * 5 2 1 7 7 O 1.42900 * 109.48062 * 44.64772 * 5 2 1 8 8 C 1.42902 * 114.09641 * 181.14104 * 7 5 2 9 9 C 1.53088 * 109.41885 * 298.84133 * 8 7 5 10 10 C 1.53177 * 109.16125 * 57.60453 * 9 8 7 11 11 C 1.53094 * 109.47892 * 164.58883 * 5 2 1 12 12 H 1.08994 * 109.52442 * 302.31079 * 11 5 2 13 13 C 1.53000 * 109.52326 * 62.50331 * 11 5 2 14 14 N 1.46500 * 109.47381 * 174.59888 * 13 11 5 15 15 C 1.38820 * 120.00165 * 180.02562 * 14 13 11 16 16 C 1.39794 * 119.58547 * 359.72629 * 15 14 13 17 17 C 1.38597 * 119.49173 * 179.79451 * 16 15 14 18 18 C 1.38392 * 118.68022 * 0.47242 * 17 16 15 19 19 C 1.40556 * 119.14713 * 359.75523 * 18 17 16 20 20 C 1.41314 * 119.78284 * 179.97438 * 19 18 17 21 21 H 1.07997 * 119.99898 * 0.02562 * 20 19 18 22 22 C 1.40022 * 119.99997 * 180.02562 * 20 19 18 23 23 N 1.30746 * 119.99993 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99879 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46933 * 90.00572 * 24 22 20 26 26 H 1.48505 * 109.46893 * 209.99967 * 24 22 20 27 27 H 1.48493 * 109.47433 * 330.00173 * 24 22 20 28 28 N 1.31956 * 119.58582 * 180.02562 * 15 14 13 29 29 H 1.08999 * 109.47184 * 300.00001 * 1 2 3 30 30 H 1.09008 * 109.46946 * 59.99966 * 1 2 3 31 31 H 1.09003 * 109.47085 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47379 * 214.24798 * 3 2 1 33 33 H 1.09000 * 109.46585 * 334.25018 * 3 2 1 34 34 H 1.09004 * 109.46978 * 94.24545 * 3 2 1 35 35 H 1.09003 * 109.47517 * 300.00267 * 4 2 1 36 36 H 1.08998 * 109.47158 * 60.00269 * 4 2 1 37 37 H 1.09000 * 109.47360 * 180.02562 * 4 2 1 38 38 H 1.09002 * 109.47911 * 58.82902 * 8 7 5 39 39 H 1.09002 * 109.47856 * 178.84703 * 8 7 5 40 40 H 1.08991 * 109.52709 * 177.51650 * 9 8 7 41 41 H 1.09003 * 109.52102 * 297.64535 * 9 8 7 42 42 H 1.08998 * 109.53862 * 62.89282 * 10 9 8 43 43 H 1.09003 * 109.54261 * 183.06469 * 10 9 8 44 44 H 1.08993 * 109.47156 * 294.60670 * 13 11 5 45 45 H 1.09005 * 109.46823 * 54.60576 * 13 11 5 46 46 H 0.97003 * 119.99286 * 0.02562 * 14 13 11 47 47 H 1.08007 * 120.25498 * 0.02562 * 16 15 14 48 48 H 1.07998 * 120.65607 * 180.23044 * 17 16 15 49 49 H 1.07992 * 120.42485 * 179.72676 * 18 17 16 50 50 H 0.97002 * 119.99856 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2492 6 1 1.9165 -0.0748 2.1180 7 8 1.2951 -1.9256 1.4416 8 6 1.6754 -2.6677 2.6021 9 6 3.1427 -3.0868 2.4800 10 6 4.0095 -1.8366 2.3010 11 6 3.5220 -1.0622 1.0726 12 1 3.6509 -1.6753 0.1808 13 6 4.3300 0.2290 0.9284 14 7 5.7591 -0.0910 0.8889 15 6 6.6950 0.9264 0.7619 16 6 6.2639 2.2528 0.6667 17 6 7.2001 3.2673 0.5443 18 6 8.5423 2.9319 0.5101 19 6 8.9126 1.5794 0.6054 20 6 10.2793 1.2217 0.5714 21 1 11.0354 1.9866 0.4729 22 6 10.6533 -0.1244 0.6654 23 7 9.7380 -1.0504 0.7842 24 14 12.4600 -0.5971 0.6212 25 1 13.0029 -0.6072 2.0033 26 1 12.6034 -1.9488 0.0231 27 1 13.2097 0.3888 -0.1980 28 7 7.9800 0.6288 0.7268 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.9620 1.5019 -0.5783 33 1 1.2885 2.0935 -0.4465 34 1 2.2329 1.7597 1.0249 35 1 1.6767 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7217 -1.2490 38 1 1.5473 -2.0467 3.4888 39 1 1.0493 -3.5559 2.6869 40 1 3.4472 -3.6149 3.3836 41 1 3.2639 -3.7417 1.6171 42 1 3.9269 -1.2060 3.1862 43 1 5.0493 -2.1312 2.1590 44 1 4.0452 0.7346 0.0058 45 1 4.1271 0.8813 1.7778 46 1 6.0512 -1.0139 0.9515 47 1 5.2095 2.4854 0.6920 48 1 6.8882 4.2988 0.4730 49 1 9.2955 3.6995 0.4110 50 1 9.9970 -1.9829 0.8490 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116636029.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:03 Heat of formation + Delta-G solvation = -34.244741 kcal Electronic energy + Delta-G solvation = -27995.236778 eV Core-core repulsion = 24407.239278 eV Total energy + Delta-G solvation = -3587.997500 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.44385 -39.99673 -37.55618 -36.91341 -35.36677 -34.15158 -32.34933 -31.81323 -30.23507 -28.61866 -28.23802 -27.28895 -26.36342 -25.80982 -23.62169 -22.99795 -22.13966 -21.06606 -19.92267 -19.23843 -18.09825 -17.23397 -17.06345 -16.55204 -16.45929 -16.11715 -16.07940 -15.68474 -15.31701 -14.83551 -14.66476 -14.58957 -14.51803 -14.34593 -13.92995 -13.77136 -13.61382 -13.24402 -13.00322 -12.88159 -12.77018 -12.72615 -12.60526 -12.52699 -12.30951 -12.26321 -12.16041 -11.79624 -11.73721 -11.65195 -11.46657 -11.33475 -11.20777 -10.99152 -10.57133 -10.31821 -9.80773 -9.42670 -8.24820 -8.21823 -6.46914 1.07646 1.36563 1.41032 1.54067 1.58872 2.25059 2.62176 2.85438 2.93702 3.55531 3.68824 3.82523 3.95327 4.06379 4.07313 4.09273 4.19647 4.23365 4.38162 4.40825 4.45691 4.56704 4.63374 4.68548 4.71305 4.77878 4.84572 4.88761 4.90974 4.93187 5.00482 5.02161 5.03699 5.07680 5.10417 5.12972 5.15132 5.18551 5.25733 5.34395 5.38969 5.44156 5.51811 5.57983 5.73791 5.98413 6.09291 6.23680 6.31001 6.58642 6.85119 6.96445 7.24163 8.36372 8.52410 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.016912 B = 0.003428 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.267413 B = 8166.215272 C = 9284.963649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.058 4.058 3 C -0.154 4.154 4 C -0.143 4.143 5 C 0.116 3.884 6 H 0.061 0.939 7 O -0.381 6.381 8 C 0.059 3.941 9 C -0.150 4.150 10 C -0.118 4.118 11 C -0.118 4.118 12 H 0.081 0.919 13 C 0.136 3.864 14 N -0.732 5.732 15 C 0.395 3.605 16 C -0.365 4.365 17 C -0.029 4.029 18 C -0.345 4.345 19 C 0.260 3.740 20 C -0.473 4.473 21 H 0.085 0.915 22 C 0.027 3.973 23 N -0.752 5.752 24 Si 0.985 3.015 25 H -0.264 1.264 26 H -0.269 1.269 27 H -0.257 1.257 28 N -0.566 5.566 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.047 0.953 38 H 0.055 0.945 39 H 0.110 0.890 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.052 0.948 44 H 0.079 0.921 45 H 0.048 0.952 46 H 0.390 0.610 47 H 0.118 0.882 48 H 0.129 0.871 49 H 0.101 0.899 50 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.521 -3.420 1.518 17.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.058 4.058 3 C -0.210 4.210 4 C -0.200 4.200 5 C 0.058 3.942 6 H 0.079 0.921 7 O -0.300 6.300 8 C -0.018 4.018 9 C -0.187 4.187 10 C -0.156 4.156 11 C -0.137 4.137 12 H 0.099 0.901 13 C 0.013 3.987 14 N -0.367 5.367 15 C 0.154 3.846 16 C -0.391 4.391 17 C -0.054 4.054 18 C -0.369 4.369 19 C 0.133 3.867 20 C -0.505 4.505 21 H 0.103 0.897 22 C -0.194 4.194 23 N -0.374 5.374 24 Si 0.805 3.195 25 H -0.189 1.189 26 H -0.193 1.193 27 H -0.181 1.181 28 N -0.288 5.288 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.128 0.872 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.096 0.904 45 H 0.066 0.934 46 H 0.224 0.776 47 H 0.136 0.864 48 H 0.146 0.854 49 H 0.119 0.881 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.646 -4.437 1.468 18.255 hybrid contribution 1.194 0.381 0.221 1.273 sum -16.452 -4.056 1.690 17.029 Atomic orbital electron populations 1.21724 0.92851 1.02139 1.01772 1.20545 0.97118 0.94758 0.93407 1.22306 1.01502 0.94733 1.02502 1.21998 1.00491 1.00483 0.96994 1.22095 0.88256 0.86139 0.97744 0.92120 1.87907 1.59508 1.36155 1.46415 1.22705 0.94818 0.96449 0.87812 1.22157 0.96050 0.97352 1.03175 1.21608 0.99367 0.97169 0.97457 1.21987 0.95852 0.96347 0.99538 0.90101 1.21795 0.78735 0.96656 1.01559 1.44398 1.03743 1.06591 1.81998 1.18979 0.88887 0.87403 0.89358 1.20941 0.99133 0.92115 1.26881 1.20999 0.92421 0.98414 0.93531 1.21683 0.96321 0.96659 1.22190 1.18660 0.93143 0.87710 0.87219 1.19926 0.91660 0.93919 1.45027 0.89685 1.26931 1.03959 0.96009 0.92549 1.70256 1.36208 1.01316 1.29643 0.85183 0.76548 0.78331 0.79430 1.18863 1.19334 1.18062 1.68186 0.98387 1.35797 1.26467 0.92545 0.91978 0.92367 0.92160 0.90829 0.92135 0.92524 0.91886 0.93366 0.92681 0.87157 0.89746 0.91539 0.92128 0.92878 0.90384 0.93368 0.77579 0.86399 0.85365 0.88117 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 7.93 71.98 0.57 -1.62 16 2 C -0.06 -1.15 0.63 -52.18 -0.03 -1.18 16 3 C -0.15 -3.00 7.58 71.98 0.55 -2.46 16 4 C -0.14 -3.02 7.34 71.98 0.53 -2.49 16 5 C 0.12 2.49 1.68 30.63 0.05 2.54 16 6 H 0.06 1.29 7.71 -2.39 -0.02 1.27 16 7 O -0.38 -8.11 9.10 -148.98 -1.36 -9.47 16 8 C 0.06 1.03 6.84 72.01 0.49 1.52 16 9 C -0.15 -2.95 6.14 30.68 0.19 -2.76 16 10 C -0.12 -2.95 5.02 30.71 0.15 -2.80 16 11 C -0.12 -2.97 1.51 -10.70 -0.02 -2.98 16 12 H 0.08 2.19 6.18 -2.39 -0.01 2.17 16 13 C 0.14 4.12 2.86 86.38 0.25 4.37 16 14 N -0.73 -29.46 5.42 -344.99 -1.87 -31.33 16 15 C 0.39 19.53 7.65 133.42 1.02 20.55 16 16 C -0.36 -16.53 9.34 22.73 0.21 -16.32 16 17 C -0.03 -1.35 10.15 22.39 0.23 -1.12 16 18 C -0.35 -17.95 9.83 22.87 0.22 -17.73 16 19 C 0.26 15.08 6.55 40.18 0.26 15.34 16 20 C -0.47 -26.75 9.14 23.46 0.21 -26.53 16 21 H 0.09 4.52 7.85 -2.91 -0.02 4.50 16 22 C 0.03 1.42 5.50 85.29 0.47 1.89 16 23 N -0.75 -41.32 11.46 21.84 0.25 -41.07 16 24 Si 0.98 39.26 29.56 68.60 2.03 41.29 16 25 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 26 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 27 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 28 N -0.57 -32.36 7.89 -186.59 -1.47 -33.83 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.94 8.12 -2.38 -0.02 0.92 16 31 H 0.06 1.08 7.37 -2.39 -0.02 1.06 16 32 H 0.06 1.36 5.34 -2.39 -0.01 1.34 16 33 H 0.07 1.22 7.76 -2.39 -0.02 1.20 16 34 H 0.06 1.18 6.83 -2.38 -0.02 1.16 16 35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.05 1.17 5.43 -2.39 -0.01 1.16 16 38 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 41 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.05 1.55 6.70 -2.39 -0.02 1.53 16 44 H 0.08 2.32 3.54 -2.39 -0.01 2.31 16 45 H 0.05 1.47 7.56 -2.38 -0.02 1.45 16 46 H 0.39 16.17 7.14 -92.71 -0.66 15.51 16 47 H 0.12 4.56 6.68 -2.91 -0.02 4.54 16 48 H 0.13 4.81 8.06 -2.91 -0.02 4.78 16 49 H 0.10 4.90 8.06 -2.91 -0.02 4.88 16 50 H 0.27 13.67 8.29 -92.71 -0.77 12.90 16 Total: -1.00 -64.96 374.19 3.21 -61.75 By element: Atomic # 1 Polarization: 44.17 SS G_CDS: 0.27 Total: 44.44 kcal Atomic # 6 Polarization: -37.13 SS G_CDS: 5.36 Total: -31.77 kcal Atomic # 7 Polarization: -103.14 SS G_CDS: -3.09 Total: -106.23 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: -1.36 Total: -9.47 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.29 kcal Total: -64.96 3.21 -61.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636029.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.503 kcal (2) G-P(sol) polarization free energy of solvation -64.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds