Wall clock time and date at job start Tue Mar 31 2020 11:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47159 * 2 1 4 4 C 1.52995 * 109.46831 * 240.00020 * 2 1 3 5 5 C 1.52998 * 109.47151 * 120.00149 * 2 1 3 6 6 H 1.09003 * 109.48427 * 287.87334 * 5 2 1 7 7 O 1.42905 * 109.48790 * 167.84817 * 5 2 1 8 8 C 1.42911 * 114.09591 * 178.85244 * 7 5 2 9 9 C 1.53085 * 109.41413 * 61.16018 * 8 7 5 10 10 C 1.53186 * 109.16406 * 302.38890 * 9 8 7 11 11 C 1.53089 * 109.48432 * 47.89851 * 5 2 1 12 12 H 1.09000 * 109.52094 * 297.51294 * 11 5 2 13 13 C 1.53010 * 109.52042 * 57.63428 * 11 5 2 14 14 N 1.46499 * 109.47046 * 173.35187 * 13 11 5 15 15 C 1.38819 * 119.99639 * 179.97438 * 14 13 11 16 16 C 1.39800 * 119.58807 * 359.72444 * 15 14 13 17 17 C 1.38593 * 119.49061 * 179.78732 * 16 15 14 18 18 C 1.38392 * 118.67990 * 0.48131 * 17 16 15 19 19 C 1.40547 * 119.15167 * 359.74540 * 18 17 16 20 20 C 1.41312 * 119.78854 * 179.97438 * 19 18 17 21 21 H 1.08004 * 119.99886 * 0.02712 * 20 19 18 22 22 C 1.40027 * 120.00349 * 180.02562 * 20 19 18 23 23 N 1.30744 * 120.00005 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99886 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47109 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47103 * 120.00209 * 24 22 20 27 27 H 1.48502 * 109.47106 * 240.00217 * 24 22 20 28 28 N 1.31957 * 119.58272 * 180.02562 * 15 14 13 29 29 H 1.09004 * 109.46844 * 300.00091 * 1 2 3 30 30 H 1.08992 * 109.47138 * 59.99781 * 1 2 3 31 31 H 1.09003 * 109.47298 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46725 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.46655 * 300.00468 * 3 2 1 34 34 H 1.08999 * 109.46865 * 60.00149 * 3 2 1 35 35 H 1.08999 * 109.47298 * 341.78857 * 4 2 1 36 36 H 1.09005 * 109.47353 * 101.79228 * 4 2 1 37 37 H 1.09004 * 109.47387 * 221.78977 * 4 2 1 38 38 H 1.09005 * 109.47783 * 181.13923 * 8 7 5 39 39 H 1.08998 * 109.48222 * 301.16357 * 8 7 5 40 40 H 1.09002 * 109.52772 * 62.29195 * 9 8 7 41 41 H 1.09007 * 109.52674 * 182.42189 * 9 8 7 42 42 H 1.08998 * 109.54104 * 297.11637 * 10 9 8 43 43 H 1.09002 * 109.54231 * 176.84873 * 10 9 8 44 44 H 1.09006 * 109.46649 * 293.35013 * 13 11 5 45 45 H 1.08997 * 109.47055 * 53.35289 * 13 11 5 46 46 H 0.96995 * 120.00005 * 0.02562 * 14 13 11 47 47 H 1.08004 * 120.25290 * 0.02562 * 16 15 14 48 48 H 1.08002 * 120.66219 * 180.22878 * 17 16 15 49 49 H 1.08006 * 120.42327 * 179.76677 * 18 17 16 50 50 H 0.96999 * 119.99664 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2492 6 1 1.8639 -0.0983 2.1261 7 8 3.4406 -0.9721 1.1165 8 6 4.0265 -1.6227 2.2460 9 6 3.3642 -2.9882 2.4467 10 6 1.8556 -2.7937 2.6278 11 6 1.2980 -2.0506 1.4100 12 1 0.2349 -1.8590 1.5555 13 6 1.4969 -2.9023 0.1545 14 7 0.9224 -4.2325 0.3708 15 6 0.9822 -5.1863 -0.6360 16 6 1.5875 -4.8664 -1.8549 17 6 1.6500 -5.8217 -2.8571 18 6 1.0981 -7.0687 -2.6214 19 6 0.4989 -7.3281 -1.3768 20 6 -0.0693 -8.5965 -1.1219 21 1 -0.0419 -9.3632 -1.8822 22 6 -0.6679 -8.8596 0.1163 23 7 -0.7016 -7.9315 1.0365 24 14 -1.4184 -10.5367 0.4534 25 1 -1.2503 -11.4033 -0.7408 26 1 -0.7364 -11.1595 1.6163 27 1 -2.8645 -10.3808 0.7528 28 7 0.4616 -6.3817 -0.4327 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.2407 -1.3333 -1.6671 36 1 2.3591 0.0137 -1.9883 37 1 2.8835 -1.3580 -0.9824 38 1 5.0943 -1.7583 2.0739 39 1 3.8764 -1.0114 3.1359 40 1 3.5485 -3.6144 1.5737 41 1 3.7795 -3.4678 3.3332 42 1 1.6689 -2.2092 3.5286 43 1 1.3705 -3.7659 2.7153 44 1 1.0005 -2.4251 -0.6905 45 1 2.5622 -2.9965 -0.0556 46 1 0.4996 -4.4464 1.2171 47 1 2.0066 -3.8837 -2.0129 48 1 2.1166 -5.5961 -3.8047 49 1 1.1277 -7.8329 -3.3840 50 1 -1.1166 -8.1136 1.8941 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116636030.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:06 Heat of formation + Delta-G solvation = -13.413591 kcal Electronic energy + Delta-G solvation = -28372.710466 eV Core-core repulsion = 24785.616272 eV Total energy + Delta-G solvation = -3587.094193 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.61922 -38.09456 -36.48028 -35.47113 -33.59725 -32.63347 -30.71280 -30.19810 -28.66596 -27.69099 -27.38628 -25.36761 -25.13189 -24.73613 -22.76605 -21.37362 -20.51188 -19.22052 -18.79569 -17.27017 -16.55462 -16.37895 -15.89974 -15.37309 -15.17479 -14.79635 -14.43868 -14.02673 -13.84096 -13.75177 -13.51390 -13.36978 -12.97573 -12.87285 -12.62247 -12.56717 -12.18991 -12.03817 -11.83982 -11.77845 -11.66276 -11.31219 -11.17876 -11.02987 -10.94267 -10.91496 -10.66350 -10.56961 -10.52808 -10.38635 -10.32764 -9.88887 -9.82719 -9.41341 -9.29964 -8.74986 -7.83513 -7.44323 -6.39774 -6.27792 -4.41949 2.90633 3.13565 3.18132 3.30620 3.35058 3.68449 4.01631 4.29644 4.53049 4.71503 4.87223 4.89730 4.93723 4.95855 5.06954 5.13048 5.19481 5.37653 5.50156 5.52083 5.54462 5.61262 5.70120 5.72299 5.77694 5.86571 5.88557 5.94141 6.03112 6.06226 6.08053 6.12771 6.20552 6.22455 6.25766 6.34741 6.46849 6.49468 6.58922 6.67740 6.94024 6.96225 7.02955 7.24840 7.30703 7.67571 7.89072 7.99872 8.23330 8.45363 8.77076 8.86758 9.19766 10.30717 10.46349 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.018029 B = 0.003522 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.693289 B = 7947.485684 C = 8511.587502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.059 4.059 3 C -0.137 4.137 4 C -0.153 4.153 5 C 0.111 3.889 6 H 0.056 0.944 7 O -0.371 6.371 8 C 0.064 3.936 9 C -0.157 4.157 10 C -0.117 4.117 11 C -0.130 4.130 12 H 0.085 0.915 13 C 0.136 3.864 14 N -0.739 5.739 15 C 0.412 3.588 16 C -0.365 4.365 17 C -0.032 4.032 18 C -0.319 4.319 19 C 0.293 3.707 20 C -0.436 4.436 21 H 0.082 0.918 22 C 0.072 3.928 23 N -0.717 5.717 24 Si 0.903 3.097 25 H -0.261 1.261 26 H -0.275 1.275 27 H -0.275 1.275 28 N -0.532 5.532 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.049 0.951 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.044 0.956 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.059 0.941 46 H 0.391 0.609 47 H 0.090 0.910 48 H 0.091 0.909 49 H 0.093 0.907 50 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.339 15.457 4.314 16.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.059 4.059 3 C -0.195 4.195 4 C -0.210 4.210 5 C 0.052 3.948 6 H 0.074 0.926 7 O -0.290 6.290 8 C -0.013 4.013 9 C -0.195 4.195 10 C -0.154 4.154 11 C -0.149 4.149 12 H 0.103 0.897 13 C 0.011 3.989 14 N -0.376 5.376 15 C 0.172 3.828 16 C -0.391 4.391 17 C -0.057 4.057 18 C -0.342 4.342 19 C 0.166 3.834 20 C -0.469 4.469 21 H 0.100 0.900 22 C -0.152 4.152 23 N -0.339 5.339 24 Si 0.727 3.273 25 H -0.185 1.185 26 H -0.200 1.200 27 H -0.200 1.200 28 N -0.254 5.254 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.063 0.937 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.227 0.773 47 H 0.108 0.892 48 H 0.109 0.891 49 H 0.111 0.889 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.081 15.504 5.041 16.806 hybrid contribution -0.211 -0.729 0.031 0.760 sum 3.869 14.775 5.072 16.093 Atomic orbital electron populations 1.22076 0.93878 1.02815 1.01764 1.20534 0.95327 0.95337 0.94698 1.21892 1.01603 0.94757 1.01198 1.22338 1.02332 1.00456 0.95882 1.22029 0.81447 0.93940 0.97349 0.92560 1.87900 1.21697 1.78790 1.40643 1.22538 0.97539 0.92415 0.88821 1.22182 0.96025 0.98078 1.03177 1.21594 0.95803 1.01244 0.96786 1.22056 1.00809 0.95803 0.96240 0.89727 1.21745 0.98469 0.82657 0.96033 1.44314 1.66042 1.10868 1.16424 1.18531 0.89719 0.88648 0.85870 1.20622 1.20881 1.00627 0.96938 1.20592 0.95538 0.93366 0.96185 1.21518 1.14555 0.97772 1.00327 1.18192 0.87601 0.91443 0.86166 1.19598 1.31256 0.96987 0.99031 0.89983 1.26030 0.95200 0.97968 0.96026 1.70172 1.28602 1.31869 1.03265 0.86356 0.79060 0.82585 0.79260 1.18478 1.20019 1.20004 1.68226 1.25367 0.98990 1.32816 0.92817 0.92144 0.91376 0.92047 0.92673 0.93208 0.91599 0.93236 0.90397 0.89175 0.93742 0.90204 0.91288 0.92331 0.90623 0.91302 0.92295 0.77346 0.89199 0.89093 0.88871 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 7.44 37.16 0.28 -1.23 16 2 C -0.06 -0.63 0.62 -154.51 -0.10 -0.73 16 3 C -0.14 -1.29 8.13 37.16 0.30 -0.99 16 4 C -0.15 -1.86 7.48 37.16 0.28 -1.58 16 5 C 0.11 1.26 1.86 -26.69 -0.05 1.21 16 6 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 7 O -0.37 -4.59 8.11 -35.23 -0.29 -4.87 16 8 C 0.06 0.69 6.84 37.20 0.25 0.94 16 9 C -0.16 -1.93 5.78 -26.59 -0.15 -2.08 16 10 C -0.12 -1.46 5.33 -26.55 -0.14 -1.60 16 11 C -0.13 -1.65 1.84 -90.48 -0.17 -1.81 16 12 H 0.08 1.05 6.48 -51.93 -0.34 0.71 16 13 C 0.14 2.14 2.20 -4.04 -0.01 2.13 16 14 N -0.74 -14.76 5.39 -60.39 -0.33 -15.09 16 15 C 0.41 10.15 7.65 -155.32 -1.19 8.96 16 16 C -0.36 -8.57 9.34 -38.87 -0.36 -8.93 16 17 C -0.03 -0.77 10.15 -39.39 -0.40 -1.17 16 18 C -0.32 -8.24 9.83 -38.65 -0.38 -8.62 16 19 C 0.29 8.29 6.55 -85.00 -0.56 7.74 16 20 C -0.44 -12.02 9.14 -37.74 -0.34 -12.36 16 21 H 0.08 2.13 7.85 -52.48 -0.41 1.72 16 22 C 0.07 1.88 5.50 -17.34 -0.10 1.78 16 23 N -0.72 -19.21 11.46 55.55 0.64 -18.57 16 24 Si 0.90 18.97 29.56 -169.99 -5.02 13.94 16 25 H -0.26 -5.40 7.11 56.52 0.40 -4.99 16 26 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 27 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 28 N -0.53 -14.83 7.89 -10.33 -0.08 -14.91 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.79 5.43 -51.93 -0.28 0.51 16 32 H 0.06 0.61 8.04 -51.93 -0.42 0.20 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.86 5.61 -51.93 -0.29 0.57 16 36 H 0.05 0.55 7.69 -51.93 -0.40 0.15 16 37 H 0.08 1.06 5.00 -51.93 -0.26 0.80 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 1.20 6.78 -51.93 -0.35 0.85 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.08 1.08 6.42 -51.93 -0.33 0.75 16 44 H 0.07 1.10 3.48 -51.93 -0.18 0.92 16 45 H 0.06 1.01 5.08 -51.93 -0.26 0.75 16 46 H 0.39 7.86 7.01 -40.82 -0.29 7.57 16 47 H 0.09 1.90 6.68 -52.48 -0.35 1.55 16 48 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 49 H 0.09 2.25 8.06 -52.48 -0.42 1.83 16 50 H 0.27 6.49 8.29 -40.82 -0.34 6.15 16 LS Contribution 368.56 15.07 5.55 5.55 Total: -1.00 -29.62 368.56 -10.31 -39.93 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -7.95 Total: 12.37 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -2.83 Total: -18.34 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: 0.23 Total: -48.58 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: -0.29 Total: -4.87 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.02 Total: 13.94 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.62 -10.31 -39.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636030.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.512 kcal (2) G-P(sol) polarization free energy of solvation -29.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds