Wall clock time and date at job start Tue Mar 31 2020 11:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47159 * 2 1 4 4 C 1.52995 * 109.46831 * 240.00020 * 2 1 3 5 5 C 1.52998 * 109.47151 * 120.00149 * 2 1 3 6 6 H 1.09003 * 109.48427 * 287.87334 * 5 2 1 7 7 O 1.42905 * 109.48790 * 167.84817 * 5 2 1 8 8 C 1.42911 * 114.09591 * 178.85244 * 7 5 2 9 9 C 1.53085 * 109.41413 * 61.16018 * 8 7 5 10 10 C 1.53186 * 109.16406 * 302.38890 * 9 8 7 11 11 C 1.53089 * 109.48432 * 47.89851 * 5 2 1 12 12 H 1.09000 * 109.52094 * 297.51294 * 11 5 2 13 13 C 1.53010 * 109.52042 * 57.63428 * 11 5 2 14 14 N 1.46499 * 109.47046 * 173.35187 * 13 11 5 15 15 C 1.38819 * 119.99639 * 179.97438 * 14 13 11 16 16 C 1.39800 * 119.58807 * 359.72444 * 15 14 13 17 17 C 1.38593 * 119.49061 * 179.78732 * 16 15 14 18 18 C 1.38392 * 118.67990 * 0.48131 * 17 16 15 19 19 C 1.40547 * 119.15167 * 359.74540 * 18 17 16 20 20 C 1.41312 * 119.78854 * 179.97438 * 19 18 17 21 21 H 1.08004 * 119.99886 * 0.02712 * 20 19 18 22 22 C 1.40027 * 120.00349 * 180.02562 * 20 19 18 23 23 N 1.30744 * 120.00005 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99886 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47109 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47103 * 120.00209 * 24 22 20 27 27 H 1.48502 * 109.47106 * 240.00217 * 24 22 20 28 28 N 1.31957 * 119.58272 * 180.02562 * 15 14 13 29 29 H 1.09004 * 109.46844 * 300.00091 * 1 2 3 30 30 H 1.08992 * 109.47138 * 59.99781 * 1 2 3 31 31 H 1.09003 * 109.47298 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46725 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.46655 * 300.00468 * 3 2 1 34 34 H 1.08999 * 109.46865 * 60.00149 * 3 2 1 35 35 H 1.08999 * 109.47298 * 341.78857 * 4 2 1 36 36 H 1.09005 * 109.47353 * 101.79228 * 4 2 1 37 37 H 1.09004 * 109.47387 * 221.78977 * 4 2 1 38 38 H 1.09005 * 109.47783 * 181.13923 * 8 7 5 39 39 H 1.08998 * 109.48222 * 301.16357 * 8 7 5 40 40 H 1.09002 * 109.52772 * 62.29195 * 9 8 7 41 41 H 1.09007 * 109.52674 * 182.42189 * 9 8 7 42 42 H 1.08998 * 109.54104 * 297.11637 * 10 9 8 43 43 H 1.09002 * 109.54231 * 176.84873 * 10 9 8 44 44 H 1.09006 * 109.46649 * 293.35013 * 13 11 5 45 45 H 1.08997 * 109.47055 * 53.35289 * 13 11 5 46 46 H 0.96995 * 120.00005 * 0.02562 * 14 13 11 47 47 H 1.08004 * 120.25290 * 0.02562 * 16 15 14 48 48 H 1.08002 * 120.66219 * 180.22878 * 17 16 15 49 49 H 1.08006 * 120.42327 * 179.76677 * 18 17 16 50 50 H 0.96999 * 119.99664 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2492 6 1 1.8639 -0.0983 2.1261 7 8 3.4406 -0.9721 1.1165 8 6 4.0265 -1.6227 2.2460 9 6 3.3642 -2.9882 2.4467 10 6 1.8556 -2.7937 2.6278 11 6 1.2980 -2.0506 1.4100 12 1 0.2349 -1.8590 1.5555 13 6 1.4969 -2.9023 0.1545 14 7 0.9224 -4.2325 0.3708 15 6 0.9822 -5.1863 -0.6360 16 6 1.5875 -4.8664 -1.8549 17 6 1.6500 -5.8217 -2.8571 18 6 1.0981 -7.0687 -2.6214 19 6 0.4989 -7.3281 -1.3768 20 6 -0.0693 -8.5965 -1.1219 21 1 -0.0419 -9.3632 -1.8822 22 6 -0.6679 -8.8596 0.1163 23 7 -0.7016 -7.9315 1.0365 24 14 -1.4184 -10.5367 0.4534 25 1 -1.2503 -11.4033 -0.7408 26 1 -0.7364 -11.1595 1.6163 27 1 -2.8645 -10.3808 0.7528 28 7 0.4616 -6.3817 -0.4327 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.2407 -1.3333 -1.6671 36 1 2.3591 0.0137 -1.9883 37 1 2.8835 -1.3580 -0.9824 38 1 5.0943 -1.7583 2.0739 39 1 3.8764 -1.0114 3.1359 40 1 3.5485 -3.6144 1.5737 41 1 3.7795 -3.4678 3.3332 42 1 1.6689 -2.2092 3.5286 43 1 1.3705 -3.7659 2.7153 44 1 1.0005 -2.4251 -0.6905 45 1 2.5622 -2.9965 -0.0556 46 1 0.4996 -4.4464 1.2171 47 1 2.0066 -3.8837 -2.0129 48 1 2.1166 -5.5961 -3.8047 49 1 1.1277 -7.8329 -3.3840 50 1 -1.1166 -8.1136 1.8941 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116636030.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:05 Heat of formation + Delta-G solvation = -28.934311 kcal Electronic energy + Delta-G solvation = -28373.383495 eV Core-core repulsion = 24785.616272 eV Total energy + Delta-G solvation = -3587.767222 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.63322 -39.96578 -37.37734 -36.90820 -35.34791 -34.08401 -32.31094 -31.69114 -30.31918 -28.73267 -28.20865 -27.28626 -26.28993 -25.76808 -23.88527 -23.24070 -22.27929 -20.31574 -19.80634 -19.17277 -18.07374 -17.41153 -17.01425 -16.74579 -16.49740 -16.24972 -16.12743 -15.59072 -15.10236 -14.75696 -14.61538 -14.58596 -14.50201 -14.22059 -13.95946 -13.79083 -13.47908 -13.34077 -12.98631 -12.95152 -12.79504 -12.72892 -12.60071 -12.51644 -12.26377 -12.18766 -12.00403 -11.86446 -11.71982 -11.68709 -11.46342 -11.32422 -11.17870 -10.84639 -10.56232 -10.25678 -9.80411 -9.42748 -8.22303 -8.21818 -6.46907 1.06997 1.36096 1.41183 1.56282 1.57570 2.25291 2.67303 2.87398 2.93744 3.59527 3.74853 3.86686 3.97625 4.05440 4.08052 4.13427 4.17240 4.25396 4.39850 4.47687 4.50311 4.61344 4.65352 4.68627 4.77556 4.80586 4.83584 4.85876 4.88961 4.96720 4.99099 5.01484 5.05956 5.09423 5.11568 5.15983 5.20178 5.21750 5.26623 5.37733 5.39995 5.45003 5.56058 5.58615 5.74005 5.98180 6.09571 6.24430 6.36388 6.59743 6.86104 6.98298 7.25871 8.36590 8.52670 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.018029 B = 0.003522 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.693289 B = 7947.485684 C = 8511.587502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.058 4.058 3 C -0.132 4.132 4 C -0.151 4.151 5 C 0.114 3.886 6 H 0.077 0.923 7 O -0.384 6.384 8 C 0.064 3.936 9 C -0.155 4.155 10 C -0.116 4.116 11 C -0.123 4.123 12 H 0.090 0.910 13 C 0.142 3.858 14 N -0.731 5.731 15 C 0.397 3.603 16 C -0.366 4.366 17 C -0.030 4.030 18 C -0.346 4.346 19 C 0.260 3.740 20 C -0.472 4.472 21 H 0.085 0.915 22 C 0.027 3.973 23 N -0.751 5.751 24 Si 0.985 3.015 25 H -0.256 1.256 26 H -0.267 1.267 27 H -0.266 1.266 28 N -0.564 5.564 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.100 0.900 39 H 0.067 0.933 40 H 0.044 0.956 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.051 0.949 44 H 0.071 0.929 45 H 0.047 0.953 46 H 0.389 0.611 47 H 0.112 0.888 48 H 0.126 0.874 49 H 0.101 0.899 50 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.343 17.049 5.209 18.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.058 4.058 3 C -0.190 4.190 4 C -0.208 4.208 5 C 0.056 3.944 6 H 0.095 0.905 7 O -0.304 6.304 8 C -0.012 4.012 9 C -0.192 4.192 10 C -0.154 4.154 11 C -0.142 4.142 12 H 0.108 0.892 13 C 0.018 3.982 14 N -0.366 5.366 15 C 0.156 3.844 16 C -0.392 4.392 17 C -0.054 4.054 18 C -0.369 4.369 19 C 0.133 3.867 20 C -0.504 4.504 21 H 0.103 0.897 22 C -0.195 4.195 23 N -0.374 5.374 24 Si 0.806 3.194 25 H -0.180 1.180 26 H -0.192 1.192 27 H -0.191 1.191 28 N -0.287 5.287 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.118 0.882 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.065 0.935 46 H 0.224 0.776 47 H 0.130 0.870 48 H 0.144 0.856 49 H 0.119 0.881 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.105 17.145 5.934 18.601 hybrid contribution -0.144 -1.109 -0.264 1.149 sum 3.960 16.036 5.670 17.464 Atomic orbital electron populations 1.22047 0.93384 1.01938 1.02927 1.20554 0.95658 0.96079 0.93544 1.21843 1.01169 0.93656 1.02287 1.22284 1.01128 1.00393 0.96991 1.22086 0.80881 0.93004 0.98455 0.90541 1.87899 1.22081 1.78812 1.41573 1.22630 0.97777 0.91471 0.89324 1.22144 0.96223 0.98803 1.02060 1.21591 0.95665 1.00361 0.97755 1.22034 1.01553 0.96096 0.94529 0.89159 1.21855 0.97236 0.80994 0.98075 1.44489 1.65336 1.11516 1.15288 1.18970 0.89387 0.88707 0.87356 1.20911 1.20201 1.01573 0.96525 1.20979 0.94484 0.92432 0.97548 1.21669 1.15909 0.99171 1.00114 1.18672 0.88487 0.92236 0.87337 1.19944 1.32841 0.97302 1.00362 0.89734 1.26936 0.95120 1.02266 0.95130 1.70262 1.29115 1.34160 1.03830 0.85122 0.78170 0.76945 0.79178 1.17972 1.19182 1.19113 1.68213 1.26858 1.00138 1.33490 0.91185 0.91524 0.93215 0.92655 0.91926 0.91843 0.93011 0.92267 0.92150 0.88240 0.91446 0.93691 0.90236 0.89788 0.93068 0.91179 0.93538 0.77608 0.87035 0.85608 0.88119 0.91444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 7.44 71.98 0.54 -2.14 16 2 C -0.06 -1.13 0.62 -52.18 -0.03 -1.16 16 3 C -0.13 -2.12 8.13 71.98 0.59 -1.53 16 4 C -0.15 -3.53 7.48 71.98 0.54 -2.99 16 5 C 0.11 2.34 1.86 30.62 0.06 2.39 16 6 H 0.08 1.32 8.09 -2.39 -0.02 1.31 16 7 O -0.38 -8.81 8.11 -148.98 -1.21 -10.01 16 8 C 0.06 1.26 6.84 72.01 0.49 1.76 16 9 C -0.15 -3.70 5.78 30.68 0.18 -3.52 16 10 C -0.12 -2.80 5.33 30.71 0.16 -2.63 16 11 C -0.12 -3.00 1.84 -10.70 -0.02 -3.02 16 12 H 0.09 2.12 6.48 -2.39 -0.02 2.11 16 13 C 0.14 4.51 2.20 86.38 0.19 4.70 16 14 N -0.73 -30.04 5.39 -344.97 -1.86 -31.90 16 15 C 0.40 20.11 7.65 133.42 1.02 21.13 16 16 C -0.37 -17.35 9.34 22.73 0.21 -17.14 16 17 C -0.03 -1.43 10.15 22.39 0.23 -1.21 16 18 C -0.35 -18.33 9.83 22.87 0.22 -18.11 16 19 C 0.26 15.27 6.55 40.17 0.26 15.54 16 20 C -0.47 -26.91 9.14 23.46 0.21 -26.69 16 21 H 0.08 4.55 7.85 -2.91 -0.02 4.53 16 22 C 0.03 1.43 5.50 85.29 0.47 1.90 16 23 N -0.75 -41.35 11.46 21.84 0.25 -41.10 16 24 Si 0.99 39.39 29.56 68.60 2.03 41.42 16 25 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 26 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 27 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 28 N -0.56 -32.64 7.89 -186.59 -1.47 -34.11 16 29 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 1.10 5.43 -2.39 -0.01 1.08 16 32 H 0.05 0.96 8.04 -2.39 -0.02 0.94 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.05 1.33 5.61 -2.39 -0.01 1.32 16 36 H 0.06 1.23 7.69 -2.38 -0.02 1.22 16 37 H 0.06 1.62 5.00 -2.38 -0.01 1.61 16 38 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.04 1.38 6.78 -2.39 -0.02 1.37 16 41 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 42 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.05 1.48 6.42 -2.39 -0.02 1.47 16 44 H 0.07 2.26 3.48 -2.38 -0.01 2.25 16 45 H 0.05 1.62 5.08 -2.39 -0.01 1.61 16 46 H 0.39 16.23 7.01 -92.71 -0.65 15.58 16 47 H 0.11 4.69 6.68 -2.91 -0.02 4.67 16 48 H 0.13 4.96 8.06 -2.91 -0.02 4.94 16 49 H 0.10 5.00 8.06 -2.91 -0.02 4.97 16 50 H 0.28 13.62 8.29 -92.71 -0.77 12.85 16 Total: -1.00 -66.28 368.56 3.35 -62.92 By element: Atomic # 1 Polarization: 45.22 SS G_CDS: 0.29 Total: 45.51 kcal Atomic # 6 Polarization: -38.05 SS G_CDS: 5.32 Total: -32.73 kcal Atomic # 7 Polarization: -104.03 SS G_CDS: -3.08 Total: -107.12 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -1.21 Total: -10.01 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.42 kcal Total: -66.28 3.35 -62.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636030.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.990 kcal (2) G-P(sol) polarization free energy of solvation -66.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds