Wall clock time and date at job start Tue Mar 31 2020 11:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47180 * 2 1 4 4 C 1.52996 * 109.47086 * 239.99814 * 2 1 3 5 5 C 1.53000 * 109.46911 * 119.99793 * 2 1 3 6 6 H 1.09002 * 109.48117 * 190.33749 * 5 2 1 7 7 O 1.42911 * 109.47994 * 70.31879 * 5 2 1 8 8 C 1.42899 * 114.09664 * 178.85800 * 7 5 2 9 9 C 1.53097 * 109.41819 * 61.15377 * 8 7 5 10 10 C 1.53178 * 109.16122 * 302.39321 * 9 8 7 11 11 C 1.53087 * 109.48492 * 310.37409 * 5 2 1 12 12 H 1.08997 * 109.52535 * 57.68477 * 11 5 2 13 13 C 1.53004 * 109.52300 * 297.56207 * 11 5 2 14 14 N 1.46491 * 109.47302 * 186.08082 * 13 11 5 15 15 C 1.38824 * 120.00261 * 179.97438 * 14 13 11 16 16 C 1.39805 * 119.58253 * 359.72493 * 15 14 13 17 17 C 1.38590 * 119.48805 * 179.77064 * 16 15 14 18 18 C 1.38384 * 118.68586 * 0.49449 * 17 16 15 19 19 C 1.40556 * 119.14494 * 359.74952 * 18 17 16 20 20 C 1.41323 * 119.78150 * 180.02562 * 19 18 17 21 21 H 1.07996 * 120.00075 * 359.97438 * 20 19 18 22 22 C 1.40019 * 119.99860 * 179.97438 * 20 19 18 23 23 N 1.30745 * 120.00408 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99962 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47134 * 90.00356 * 24 22 20 26 26 H 1.48503 * 109.47349 * 209.99762 * 24 22 20 27 27 H 1.48501 * 109.47401 * 330.00267 * 24 22 20 28 28 N 1.31957 * 119.58858 * 179.97438 * 15 14 13 29 29 H 1.09002 * 109.46801 * 300.00170 * 1 2 3 30 30 H 1.08996 * 109.47099 * 59.99996 * 1 2 3 31 31 H 1.08997 * 109.47365 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46989 * 140.91525 * 3 2 1 33 33 H 1.08997 * 109.46828 * 260.92047 * 3 2 1 34 34 H 1.09001 * 109.46962 * 20.92192 * 3 2 1 35 35 H 1.08997 * 109.47218 * 300.00335 * 4 2 1 36 36 H 1.09004 * 109.47312 * 60.00172 * 4 2 1 37 37 H 1.09001 * 109.47181 * 179.97438 * 4 2 1 38 38 H 1.08996 * 109.48117 * 181.13804 * 8 7 5 39 39 H 1.08997 * 109.48266 * 301.17194 * 8 7 5 40 40 H 1.09001 * 109.52314 * 182.48442 * 9 8 7 41 41 H 1.09006 * 109.57051 * 62.32841 * 9 8 7 42 42 H 1.08998 * 109.54174 * 297.10671 * 10 9 8 43 43 H 1.09002 * 109.60917 * 176.88830 * 10 9 8 44 44 H 1.08999 * 109.46621 * 306.08038 * 13 11 5 45 45 H 1.08997 * 109.47294 * 66.07559 * 13 11 5 46 46 H 0.97007 * 120.00335 * 359.97438 * 14 13 11 47 47 H 1.08005 * 120.25259 * 359.97438 * 16 15 14 48 48 H 1.08006 * 120.66001 * 180.24824 * 17 16 15 49 49 H 1.08000 * 120.42625 * 179.77283 * 18 17 16 50 50 H 0.96999 * 120.00385 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 3.1143 -0.5644 1.3465 7 8 1.7710 -2.1201 1.1351 8 6 2.2322 -2.8953 2.2435 9 6 1.5287 -2.4268 3.5200 10 6 1.8002 -0.9332 3.7246 11 6 1.3288 -0.1655 2.4858 12 1 0.2515 -0.2854 2.3711 13 6 1.6639 1.3189 2.6444 14 7 1.1030 1.8143 3.9038 15 6 1.2797 3.1423 4.2676 16 6 1.9994 3.9979 3.4283 17 6 2.1706 5.3245 3.7911 18 6 1.6283 5.7614 4.9870 19 6 0.9195 4.8513 5.7902 20 6 0.3597 5.2832 7.0138 21 1 0.4776 6.3093 7.3293 22 6 -0.3477 4.3806 7.8172 23 7 -0.4908 3.1384 7.4352 24 14 -1.0883 4.9515 9.4343 25 1 -2.4702 5.4421 9.2001 26 1 -1.1216 3.8167 10.3916 27 1 -0.2619 6.0497 9.9969 28 7 0.7706 3.5799 5.4036 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 2.9132 1.5191 0.6479 33 1 2.3141 1.7310 -1.0148 34 1 1.2562 2.1050 0.3670 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7209 -1.2494 38 1 2.0074 -3.9475 2.0698 39 1 3.3089 -2.7669 2.3539 40 1 1.9114 -2.9868 4.3733 41 1 0.4553 -2.5926 3.4273 42 1 2.8688 -0.7732 3.8680 43 1 1.2576 -0.5795 4.6012 44 1 2.7462 1.4481 2.6530 45 1 1.2378 1.8786 1.8119 46 1 0.6081 1.2143 4.4836 47 1 2.4159 3.6288 2.5027 48 1 2.7197 6.0030 3.1551 49 1 1.7479 6.7884 5.2990 50 1 -0.9806 2.5131 7.9919 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116636031.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:08 Heat of formation + Delta-G solvation = -16.983612 kcal Electronic energy + Delta-G solvation = -27997.403144 eV Core-core repulsion = 24410.154143 eV Total energy + Delta-G solvation = -3587.249001 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.45944 -38.16775 -36.62508 -35.55775 -33.64296 -32.73878 -30.87388 -30.22084 -28.60108 -27.77533 -27.35924 -25.41900 -25.14723 -24.80266 -22.28461 -21.32469 -20.54351 -19.88305 -19.03211 -17.33969 -16.55565 -16.23566 -15.90379 -15.14682 -15.03794 -14.85265 -14.49464 -14.46333 -13.89280 -13.81774 -13.55222 -13.22624 -13.02950 -12.96565 -12.92232 -12.38249 -12.14694 -12.11382 -11.90374 -11.81612 -11.65469 -11.33563 -11.29820 -11.15584 -10.96655 -10.82715 -10.70264 -10.62313 -10.56455 -10.43601 -10.27181 -10.06717 -9.88983 -9.43362 -9.36675 -8.80283 -7.87073 -7.47386 -6.44947 -6.30031 -4.44660 2.89975 3.12166 3.15484 3.27275 3.32859 3.64777 4.00076 4.21082 4.50562 4.68156 4.80157 4.86123 4.87501 4.95598 5.01101 5.14841 5.17266 5.32657 5.38969 5.50916 5.52058 5.61844 5.69217 5.72438 5.75606 5.82936 5.85553 5.92995 5.96803 6.01280 6.05159 6.08647 6.12672 6.18630 6.21968 6.29134 6.37479 6.42743 6.46892 6.61602 6.89805 6.92911 6.98502 7.17666 7.28190 7.63640 7.85191 7.95837 8.20054 8.41293 8.72876 8.83768 9.16077 10.28014 10.43610 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.016926 B = 0.003429 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.850673 B = 8164.444755 C = 9290.948591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.059 4.059 3 C -0.155 4.155 4 C -0.134 4.134 5 C 0.111 3.889 6 H 0.058 0.942 7 O -0.374 6.374 8 C 0.062 3.938 9 C -0.155 4.155 10 C -0.118 4.118 11 C -0.129 4.129 12 H 0.088 0.912 13 C 0.131 3.869 14 N -0.738 5.738 15 C 0.412 3.588 16 C -0.367 4.367 17 C -0.032 4.032 18 C -0.318 4.318 19 C 0.293 3.707 20 C -0.436 4.436 21 H 0.082 0.918 22 C 0.072 3.928 23 N -0.717 5.717 24 Si 0.904 3.096 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.262 1.262 28 N -0.532 5.532 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.090 0.910 39 H 0.047 0.953 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.047 0.953 45 H 0.075 0.925 46 H 0.393 0.607 47 H 0.089 0.911 48 H 0.091 0.909 49 H 0.094 0.906 50 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.439 -11.423 -11.448 16.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.059 4.059 3 C -0.211 4.211 4 C -0.191 4.191 5 C 0.053 3.947 6 H 0.076 0.924 7 O -0.293 6.293 8 C -0.015 4.015 9 C -0.193 4.193 10 C -0.155 4.155 11 C -0.148 4.148 12 H 0.106 0.894 13 C 0.006 3.994 14 N -0.375 5.375 15 C 0.172 3.828 16 C -0.393 4.393 17 C -0.057 4.057 18 C -0.341 4.341 19 C 0.166 3.834 20 C -0.468 4.468 21 H 0.100 0.900 22 C -0.153 4.153 23 N -0.338 5.338 24 Si 0.728 3.272 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.186 1.186 28 N -0.254 5.254 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.108 0.892 39 H 0.065 0.935 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.065 0.935 45 H 0.093 0.907 46 H 0.228 0.772 47 H 0.107 0.893 48 H 0.109 0.891 49 H 0.112 0.888 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.901 -12.250 -11.185 16.840 hybrid contribution 0.167 0.661 0.746 1.010 sum 3.068 -11.589 -10.440 15.897 Atomic orbital electron populations 1.22008 0.94017 1.02176 1.01910 1.20530 0.96464 0.94892 0.93976 1.22382 1.01923 0.94816 1.02027 1.21804 1.00531 1.00798 0.95999 1.22143 0.97689 0.81090 0.93794 0.92438 1.87898 1.81614 1.17855 1.41938 1.22538 0.97326 0.95306 0.86342 1.22194 1.01825 0.97008 0.98262 1.21627 1.01750 0.93951 0.98203 1.22075 1.02104 0.95297 0.95279 0.89377 1.21740 0.97636 0.92127 0.87866 1.44235 1.62260 1.08404 1.22642 1.18532 0.89598 0.84296 0.90400 1.20597 1.18816 0.95592 1.04248 1.20587 0.95723 0.94280 0.95062 1.21523 1.13243 0.99915 0.99414 1.18191 0.87576 0.86007 0.91626 1.19573 1.28434 0.97039 1.01742 0.89974 1.26032 0.95425 0.94590 0.99226 1.70155 1.26578 1.03081 1.34022 0.86398 0.79973 0.79341 0.81460 1.19529 1.20293 1.18626 1.68217 1.26953 1.16439 1.13749 0.91887 0.92826 0.92188 0.91834 0.92408 0.90836 0.91858 0.92940 0.93059 0.89228 0.93496 0.91072 0.91116 0.91854 0.90689 0.93472 0.90719 0.77164 0.89272 0.89059 0.88818 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 7.48 37.16 0.28 -1.31 16 2 C -0.06 -0.63 0.62 -154.51 -0.10 -0.72 16 3 C -0.15 -1.68 7.51 37.16 0.28 -1.40 16 4 C -0.13 -1.30 7.97 37.16 0.30 -1.01 16 5 C 0.11 1.28 1.57 -26.69 -0.04 1.24 16 6 H 0.06 0.67 7.87 -51.93 -0.41 0.26 16 7 O -0.37 -4.35 9.08 -35.23 -0.32 -4.67 16 8 C 0.06 0.61 6.84 37.21 0.25 0.86 16 9 C -0.16 -1.63 6.14 -26.59 -0.16 -1.79 16 10 C -0.12 -1.49 5.02 -26.55 -0.13 -1.62 16 11 C -0.13 -1.65 1.55 -90.48 -0.14 -1.79 16 12 H 0.09 1.19 6.17 -51.93 -0.32 0.87 16 13 C 0.13 2.02 2.82 -4.04 -0.01 2.01 16 14 N -0.74 -14.63 5.42 -60.40 -0.33 -14.96 16 15 C 0.41 10.05 7.65 -155.32 -1.19 8.86 16 16 C -0.37 -8.45 9.34 -38.87 -0.36 -8.81 16 17 C -0.03 -0.75 10.15 -39.40 -0.40 -1.15 16 18 C -0.32 -8.13 9.83 -38.65 -0.38 -8.51 16 19 C 0.29 8.23 6.55 -85.00 -0.56 7.68 16 20 C -0.44 -11.92 9.14 -37.74 -0.34 -12.27 16 21 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 22 C 0.07 1.86 5.50 -17.35 -0.10 1.77 16 23 N -0.72 -19.14 11.46 55.55 0.64 -18.50 16 24 Si 0.90 18.88 29.56 -169.99 -5.02 13.85 16 25 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 26 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 27 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 28 N -0.53 -14.75 7.89 -10.32 -0.08 -14.83 16 29 H 0.06 0.76 5.84 -51.93 -0.30 0.46 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.67 7.99 -51.93 -0.41 0.25 16 32 H 0.06 0.71 6.06 -51.93 -0.31 0.39 16 33 H 0.06 0.56 7.71 -51.93 -0.40 0.15 16 34 H 0.07 0.88 5.64 -51.93 -0.29 0.59 16 35 H 0.06 0.65 7.45 -51.93 -0.39 0.26 16 36 H 0.05 0.46 8.13 -51.93 -0.42 0.04 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.07 1.06 6.66 -51.93 -0.35 0.72 16 44 H 0.05 0.74 7.22 -51.93 -0.37 0.37 16 45 H 0.08 1.14 3.75 -51.93 -0.19 0.94 16 46 H 0.39 7.87 7.10 -40.82 -0.29 7.58 16 47 H 0.09 1.81 6.68 -52.48 -0.35 1.46 16 48 H 0.09 1.83 8.06 -52.48 -0.42 1.40 16 49 H 0.09 2.23 8.06 -52.49 -0.42 1.81 16 50 H 0.27 6.52 8.29 -40.82 -0.34 6.18 16 LS Contribution 373.90 15.07 5.63 5.63 Total: -1.00 -29.46 373.90 -10.46 -39.92 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -8.17 Total: 11.51 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -2.80 Total: -17.96 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: 0.23 Total: -48.29 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: -0.32 Total: -4.67 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.85 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.46 -10.46 -39.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636031.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.939 kcal (2) G-P(sol) polarization free energy of solvation -29.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds