Wall clock time and date at job start Tue Mar 31 2020 11:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47180 * 2 1 4 4 C 1.52996 * 109.47086 * 239.99814 * 2 1 3 5 5 C 1.53000 * 109.46911 * 119.99793 * 2 1 3 6 6 H 1.09002 * 109.48117 * 190.33749 * 5 2 1 7 7 O 1.42911 * 109.47994 * 70.31879 * 5 2 1 8 8 C 1.42899 * 114.09664 * 178.85800 * 7 5 2 9 9 C 1.53097 * 109.41819 * 61.15377 * 8 7 5 10 10 C 1.53178 * 109.16122 * 302.39321 * 9 8 7 11 11 C 1.53087 * 109.48492 * 310.37409 * 5 2 1 12 12 H 1.08997 * 109.52535 * 57.68477 * 11 5 2 13 13 C 1.53004 * 109.52300 * 297.56207 * 11 5 2 14 14 N 1.46491 * 109.47302 * 186.08082 * 13 11 5 15 15 C 1.38824 * 120.00261 * 179.97438 * 14 13 11 16 16 C 1.39805 * 119.58253 * 359.72493 * 15 14 13 17 17 C 1.38590 * 119.48805 * 179.77064 * 16 15 14 18 18 C 1.38384 * 118.68586 * 0.49449 * 17 16 15 19 19 C 1.40556 * 119.14494 * 359.74952 * 18 17 16 20 20 C 1.41323 * 119.78150 * 180.02562 * 19 18 17 21 21 H 1.07996 * 120.00075 * 359.97438 * 20 19 18 22 22 C 1.40019 * 119.99860 * 179.97438 * 20 19 18 23 23 N 1.30745 * 120.00408 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99962 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47134 * 90.00356 * 24 22 20 26 26 H 1.48503 * 109.47349 * 209.99762 * 24 22 20 27 27 H 1.48501 * 109.47401 * 330.00267 * 24 22 20 28 28 N 1.31957 * 119.58858 * 179.97438 * 15 14 13 29 29 H 1.09002 * 109.46801 * 300.00170 * 1 2 3 30 30 H 1.08996 * 109.47099 * 59.99996 * 1 2 3 31 31 H 1.08997 * 109.47365 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46989 * 140.91525 * 3 2 1 33 33 H 1.08997 * 109.46828 * 260.92047 * 3 2 1 34 34 H 1.09001 * 109.46962 * 20.92192 * 3 2 1 35 35 H 1.08997 * 109.47218 * 300.00335 * 4 2 1 36 36 H 1.09004 * 109.47312 * 60.00172 * 4 2 1 37 37 H 1.09001 * 109.47181 * 179.97438 * 4 2 1 38 38 H 1.08996 * 109.48117 * 181.13804 * 8 7 5 39 39 H 1.08997 * 109.48266 * 301.17194 * 8 7 5 40 40 H 1.09001 * 109.52314 * 182.48442 * 9 8 7 41 41 H 1.09006 * 109.57051 * 62.32841 * 9 8 7 42 42 H 1.08998 * 109.54174 * 297.10671 * 10 9 8 43 43 H 1.09002 * 109.60917 * 176.88830 * 10 9 8 44 44 H 1.08999 * 109.46621 * 306.08038 * 13 11 5 45 45 H 1.08997 * 109.47294 * 66.07559 * 13 11 5 46 46 H 0.97007 * 120.00335 * 359.97438 * 14 13 11 47 47 H 1.08005 * 120.25259 * 359.97438 * 16 15 14 48 48 H 1.08006 * 120.66001 * 180.24824 * 17 16 15 49 49 H 1.08000 * 120.42625 * 179.77283 * 18 17 16 50 50 H 0.96999 * 120.00385 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 3.1143 -0.5644 1.3465 7 8 1.7710 -2.1201 1.1351 8 6 2.2322 -2.8953 2.2435 9 6 1.5287 -2.4268 3.5200 10 6 1.8002 -0.9332 3.7246 11 6 1.3288 -0.1655 2.4858 12 1 0.2515 -0.2854 2.3711 13 6 1.6639 1.3189 2.6444 14 7 1.1030 1.8143 3.9038 15 6 1.2797 3.1423 4.2676 16 6 1.9994 3.9979 3.4283 17 6 2.1706 5.3245 3.7911 18 6 1.6283 5.7614 4.9870 19 6 0.9195 4.8513 5.7902 20 6 0.3597 5.2832 7.0138 21 1 0.4776 6.3093 7.3293 22 6 -0.3477 4.3806 7.8172 23 7 -0.4908 3.1384 7.4352 24 14 -1.0883 4.9515 9.4343 25 1 -2.4702 5.4421 9.2001 26 1 -1.1216 3.8167 10.3916 27 1 -0.2619 6.0497 9.9969 28 7 0.7706 3.5799 5.4036 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 2.9132 1.5191 0.6479 33 1 2.3141 1.7310 -1.0148 34 1 1.2562 2.1050 0.3670 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7209 -1.2494 38 1 2.0074 -3.9475 2.0698 39 1 3.3089 -2.7669 2.3539 40 1 1.9114 -2.9868 4.3733 41 1 0.4553 -2.5926 3.4273 42 1 2.8688 -0.7732 3.8680 43 1 1.2576 -0.5795 4.6012 44 1 2.7462 1.4481 2.6530 45 1 1.2378 1.8786 1.8119 46 1 0.6081 1.2143 4.4836 47 1 2.4159 3.6288 2.5027 48 1 2.7197 6.0030 3.1551 49 1 1.7479 6.7884 5.2990 50 1 -0.9806 2.5131 7.9919 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116636031.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:07 Heat of formation + Delta-G solvation = -32.159746 kcal Electronic energy + Delta-G solvation = -27998.061230 eV Core-core repulsion = 24410.154143 eV Total energy + Delta-G solvation = -3587.907088 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.45351 -39.99396 -37.57631 -36.90748 -35.36579 -34.14583 -32.35084 -31.81225 -30.23468 -28.73960 -28.21410 -27.28797 -26.29442 -25.81678 -23.61939 -22.99581 -22.14046 -21.05816 -19.94632 -19.23407 -18.09203 -17.24843 -17.05895 -16.54749 -16.43061 -16.10226 -16.07276 -15.68825 -15.31772 -14.84289 -14.67821 -14.59387 -14.55038 -14.31105 -13.90611 -13.77496 -13.64825 -13.28116 -12.94730 -12.89057 -12.76914 -12.72536 -12.59942 -12.53440 -12.32396 -12.26027 -12.15520 -11.80000 -11.73631 -11.64630 -11.46510 -11.32592 -11.19813 -10.98097 -10.56277 -10.31688 -9.80535 -9.42519 -8.24252 -8.21727 -6.46838 1.07749 1.36755 1.40996 1.53976 1.58908 2.25048 2.62916 2.84984 2.93783 3.55224 3.68571 3.82756 3.95395 4.06345 4.07730 4.09694 4.20690 4.23158 4.37615 4.40904 4.45997 4.55663 4.63011 4.68573 4.70924 4.77490 4.85304 4.89444 4.91224 4.93094 5.00357 5.02251 5.03506 5.07055 5.11067 5.13017 5.15427 5.18726 5.24600 5.34561 5.38990 5.43511 5.52452 5.56256 5.73962 5.98589 6.09552 6.23756 6.30776 6.58969 6.85257 6.96740 7.24367 8.36533 8.52525 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.016926 B = 0.003429 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.850673 B = 8164.444755 C = 9290.948591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.058 4.058 3 C -0.154 4.154 4 C -0.129 4.129 5 C 0.116 3.884 6 H 0.061 0.939 7 O -0.381 6.381 8 C 0.059 3.941 9 C -0.150 4.150 10 C -0.118 4.118 11 C -0.118 4.118 12 H 0.080 0.920 13 C 0.133 3.867 14 N -0.732 5.732 15 C 0.394 3.606 16 C -0.365 4.365 17 C -0.030 4.030 18 C -0.346 4.346 19 C 0.260 3.740 20 C -0.473 4.473 21 H 0.085 0.915 22 C 0.027 3.973 23 N -0.752 5.752 24 Si 0.985 3.015 25 H -0.264 1.264 26 H -0.269 1.269 27 H -0.257 1.257 28 N -0.566 5.566 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.111 0.889 39 H 0.055 0.945 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.052 0.948 44 H 0.048 0.952 45 H 0.082 0.918 46 H 0.389 0.611 47 H 0.118 0.882 48 H 0.129 0.871 49 H 0.101 0.899 50 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.008 -12.234 -12.513 17.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.058 4.058 3 C -0.210 4.210 4 C -0.186 4.186 5 C 0.058 3.942 6 H 0.078 0.922 7 O -0.300 6.300 8 C -0.018 4.018 9 C -0.187 4.187 10 C -0.156 4.156 11 C -0.137 4.137 12 H 0.098 0.902 13 C 0.009 3.991 14 N -0.368 5.368 15 C 0.154 3.846 16 C -0.390 4.390 17 C -0.054 4.054 18 C -0.369 4.369 19 C 0.133 3.867 20 C -0.505 4.505 21 H 0.103 0.897 22 C -0.194 4.194 23 N -0.374 5.374 24 Si 0.805 3.195 25 H -0.189 1.189 26 H -0.193 1.193 27 H -0.181 1.181 28 N -0.288 5.288 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.129 0.871 39 H 0.073 0.927 40 H 0.102 0.898 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.099 0.901 46 H 0.224 0.776 47 H 0.136 0.864 48 H 0.146 0.854 49 H 0.119 0.881 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.487 -13.088 -12.293 18.292 hybrid contribution 0.043 0.845 0.953 1.275 sum 3.530 -12.244 -11.340 17.058 Atomic orbital electron populations 1.21968 0.94358 1.01884 1.01581 1.20542 0.96135 0.94905 0.94227 1.22349 1.01230 0.94557 1.02891 1.21756 1.00830 1.00392 0.95649 1.22088 0.97520 0.81374 0.93228 0.92157 1.87901 1.81826 1.17645 1.42617 1.22702 0.97653 0.96093 0.85305 1.22161 1.01805 0.95340 0.99425 1.21603 1.01105 0.95673 0.97205 1.21975 1.01833 0.93578 0.96329 0.90164 1.21947 0.97357 0.93874 0.85908 1.44424 1.61693 1.06847 1.23795 1.18988 0.89510 0.86081 0.90070 1.20942 1.17805 0.95453 1.04844 1.20998 0.94841 0.94998 0.94534 1.21680 1.14448 1.00138 1.00588 1.18663 0.88528 0.86893 0.92659 1.19927 1.30117 0.97765 1.02737 0.89689 1.26929 0.95296 0.94401 1.02817 1.70253 1.27252 1.04265 1.35673 0.85185 0.78956 0.78993 0.76366 1.18870 1.19328 1.18063 1.68188 1.28417 1.16766 1.15477 0.93466 0.91891 0.92438 0.92123 0.90844 0.92155 0.92353 0.91894 0.92520 0.87144 0.92687 0.89754 0.91529 0.92150 0.92891 0.93357 0.90065 0.77617 0.86374 0.85365 0.88124 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 7.48 71.98 0.54 -2.40 16 2 C -0.06 -1.14 0.62 -52.18 -0.03 -1.17 16 3 C -0.15 -3.04 7.51 71.98 0.54 -2.50 16 4 C -0.13 -2.19 7.97 71.98 0.57 -1.62 16 5 C 0.12 2.50 1.57 30.62 0.05 2.54 16 6 H 0.06 1.29 7.87 -2.39 -0.02 1.27 16 7 O -0.38 -8.11 9.08 -148.98 -1.35 -9.46 16 8 C 0.06 1.03 6.84 72.01 0.49 1.52 16 9 C -0.15 -2.95 6.14 30.69 0.19 -2.76 16 10 C -0.12 -2.96 5.02 30.71 0.15 -2.80 16 11 C -0.12 -2.97 1.55 -10.71 -0.02 -2.98 16 12 H 0.08 2.17 6.17 -2.39 -0.01 2.15 16 13 C 0.13 4.01 2.82 86.38 0.24 4.25 16 14 N -0.73 -29.50 5.42 -344.99 -1.87 -31.37 16 15 C 0.39 19.53 7.65 133.42 1.02 20.55 16 16 C -0.36 -16.52 9.34 22.73 0.21 -16.30 16 17 C -0.03 -1.35 10.15 22.39 0.23 -1.12 16 18 C -0.35 -17.96 9.83 22.87 0.22 -17.73 16 19 C 0.26 15.08 6.55 40.18 0.26 15.35 16 20 C -0.47 -26.77 9.14 23.46 0.21 -26.56 16 21 H 0.08 4.52 7.85 -2.91 -0.02 4.50 16 22 C 0.03 1.43 5.50 85.29 0.47 1.90 16 23 N -0.75 -41.36 11.46 21.84 0.25 -41.11 16 24 Si 0.98 39.29 29.56 68.60 2.03 41.31 16 25 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 26 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 27 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 28 N -0.57 -32.39 7.89 -186.58 -1.47 -33.86 16 29 H 0.05 1.12 5.84 -2.39 -0.01 1.11 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.22 7.99 -2.39 -0.02 1.20 16 32 H 0.06 1.23 6.06 -2.39 -0.01 1.21 16 33 H 0.07 1.22 7.71 -2.39 -0.02 1.20 16 34 H 0.06 1.36 5.64 -2.39 -0.01 1.35 16 35 H 0.06 1.06 7.45 -2.39 -0.02 1.04 16 36 H 0.06 0.94 8.13 -2.38 -0.02 0.92 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 38 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.07 1.37 8.14 -2.38 -0.02 1.36 16 42 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.05 1.55 6.66 -2.39 -0.02 1.53 16 44 H 0.05 1.47 7.22 -2.39 -0.02 1.45 16 45 H 0.08 2.41 3.75 -2.39 -0.01 2.40 16 46 H 0.39 16.18 7.10 -92.70 -0.66 15.52 16 47 H 0.12 4.56 6.68 -2.91 -0.02 4.54 16 48 H 0.13 4.81 8.06 -2.91 -0.02 4.78 16 49 H 0.10 4.90 8.06 -2.91 -0.02 4.87 16 50 H 0.27 13.68 8.29 -92.71 -0.77 12.91 16 Total: -1.00 -65.05 373.90 3.22 -61.82 By element: Atomic # 1 Polarization: 44.22 SS G_CDS: 0.28 Total: 44.49 kcal Atomic # 6 Polarization: -37.19 SS G_CDS: 5.36 Total: -31.83 kcal Atomic # 7 Polarization: -103.25 SS G_CDS: -3.09 Total: -106.34 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: -1.35 Total: -9.46 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.31 kcal Total: -65.05 3.22 -61.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636031.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.665 kcal (2) G-P(sol) polarization free energy of solvation -65.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds