Wall clock time and date at job start Tue Mar 31 2020 12:41:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52997 * 109.47311 * 2 1
4 4 N 1.46503 * 109.47615 * 180.02562 * 3 2 1
5 5 C 1.36938 * 119.99492 * 272.19929 * 4 3 2
6 6 H 1.07999 * 120.00408 * 8.53166 * 5 4 3
7 7 C 1.38816 * 119.99476 * 188.53442 * 5 4 3
8 8 N 1.31620 * 120.00408 * 24.79487 * 7 5 4
9 9 Si 1.86800 * 119.99773 * 204.79988 * 7 5 4
10 10 H 1.48503 * 109.47209 * 359.97438 * 9 7 5
11 11 H 1.48500 * 109.47378 * 120.00026 * 9 7 5
12 12 H 1.48501 * 109.47212 * 239.99973 * 9 7 5
13 13 C 1.46495 * 120.00198 * 92.19163 * 4 3 2
14 14 C 1.50703 * 109.47117 * 90.00266 * 13 4 3
15 15 O 1.21288 * 119.99657 * 0.02562 * 14 13 4
16 16 N 1.34776 * 119.99998 * 179.97438 * 14 13 4
17 17 C 1.46496 * 119.99650 * 180.02562 * 16 14 13
18 18 H 1.09002 * 109.47472 * 324.99996 * 17 16 14
19 19 C 1.53002 * 109.47470 * 85.00272 * 17 16 14
20 20 C 1.50706 * 109.47078 * 205.00176 * 17 16 14
21 21 C 1.38233 * 120.00141 * 140.00452 * 20 17 16
22 22 C 1.38237 * 120.00021 * 180.02562 * 21 20 17
23 23 C 1.38239 * 119.99626 * 359.97438 * 22 21 20
24 24 C 1.50701 * 119.99356 * 179.97438 * 23 22 21
25 25 C 1.52999 * 109.47185 * 90.00229 * 24 23 22
26 26 C 1.38232 * 120.00266 * 0.25035 * 23 22 21
27 27 C 1.38236 * 119.99932 * 359.47714 * 26 23 22
28 28 H 1.09002 * 109.46895 * 300.00218 * 1 2 3
29 29 H 1.09003 * 109.46848 * 60.00123 * 1 2 3
30 30 H 1.08991 * 109.46781 * 179.97438 * 1 2 3
31 31 H 1.08996 * 109.47184 * 240.00104 * 2 1 3
32 32 H 1.08998 * 109.47515 * 120.00137 * 2 1 3
33 33 H 1.09002 * 109.47319 * 60.00042 * 3 2 1
34 34 H 1.09007 * 109.46980 * 300.00229 * 3 2 1
35 35 H 0.96992 * 120.00230 * 180.02562 * 8 7 5
36 36 H 1.09002 * 109.47312 * 330.00497 * 13 4 3
37 37 H 1.08997 * 109.47478 * 210.00808 * 13 4 3
38 38 H 0.97001 * 120.00163 * 0.02562 * 16 14 13
39 39 H 1.09002 * 109.46998 * 59.99434 * 19 17 16
40 40 H 1.08992 * 109.47371 * 180.02562 * 19 17 16
41 41 H 1.08998 * 109.46624 * 300.00103 * 19 17 16
42 42 H 1.07999 * 120.00190 * 359.97438 * 21 20 17
43 43 H 1.07993 * 119.99963 * 179.97438 * 22 21 20
44 44 H 1.08994 * 109.47381 * 329.99319 * 24 23 22
45 45 H 1.09005 * 109.46938 * 209.99438 * 24 23 22
46 46 H 1.09005 * 109.46537 * 299.99455 * 25 24 23
47 47 H 1.09004 * 109.47239 * 179.97438 * 25 24 23
48 48 H 1.08994 * 109.47704 * 59.99287 * 25 24 23
49 49 H 1.07996 * 119.99892 * 179.72873 * 26 23 22
50 50 H 1.08000 * 120.00328 * 180.27627 * 27 26 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 7 3.5051 1.4425 -0.0006
5 6 4.1902 1.3969 1.1842
6 1 3.6595 1.2224 2.1085
7 6 5.5668 1.5750 1.1971
8 7 6.1527 2.2469 0.2288
9 14 6.5879 0.8609 2.5889
10 1 5.6970 0.1558 3.5451
11 1 7.5780 -0.0974 2.0352
12 1 7.3004 1.9571 3.2931
13 6 4.2371 1.4913 -1.2686
14 6 4.4881 2.9278 -1.6489
15 8 4.0947 3.8227 -0.9310
16 7 5.1506 3.2180 -2.7861
17 6 5.3951 4.6144 -3.1554
18 1 4.5485 5.2262 -2.8438
19 6 6.6655 5.1105 -2.4619
20 6 5.5657 4.7165 -4.6493
21 6 5.0124 5.7802 -5.3371
22 6 5.1685 5.8736 -6.7074
23 6 5.8784 4.9033 -7.3898
24 6 6.0480 5.0048 -8.8838
25 6 7.3197 5.7945 -9.2002
26 6 6.4277 3.8371 -6.7026
27 6 6.2764 3.7468 -5.3316
28 1 -0.3633 0.5139 0.8900
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3632 -1.0276 -0.0005
31 1 1.8934 -0.5138 -0.8900
32 1 1.8934 -0.5138 0.8899
33 1 1.6768 1.9563 0.8900
34 1 1.6767 1.9563 -0.8900
35 1 7.1146 2.3710 0.2377
36 1 3.6477 1.0070 -2.0473
37 1 5.1895 0.9728 -1.1586
38 1 5.4656 2.5022 -3.3601
39 1 7.5121 4.4987 -2.7735
40 1 6.8471 6.1496 -2.7363
41 1 6.5420 5.0366 -1.3815
42 1 4.4575 6.5380 -4.8040
43 1 4.7359 6.7044 -7.2448
44 1 5.1865 5.5159 -9.3134
45 1 6.1263 4.0044 -9.3094
46 1 7.2413 6.7950 -8.7747
47 1 7.4426 5.8675 -10.2808
48 1 8.1812 5.2834 -8.7706
49 1 6.9785 3.0769 -7.2364
50 1 6.7094 2.9161 -4.7940
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000049981150.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:41:10
Heat of formation + Delta-G solvation = -4.207220 kcal
Electronic energy + Delta-G solvation = -27059.087407 eV
Core-core repulsion = 23472.392432 eV
Total energy + Delta-G solvation = -3586.694975 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 318.205 amu
Computer time = 1.09 seconds
Orbital eigenvalues (eV)
-39.74852 -38.21618 -36.08085 -35.03445 -33.19514 -32.86641 -30.96546 -30.61503
-30.24283 -28.35683 -26.76983 -25.49229 -24.32146 -22.80235 -22.43860 -21.68685
-20.46787 -19.95781 -19.10847 -17.14058 -16.33603 -15.83474 -15.41439 -15.15777
-14.86401 -14.47109 -14.27868 -13.86847 -13.76362 -13.75863 -13.48975 -13.27992
-13.18730 -12.89720 -12.72620 -12.52093 -12.31573 -12.11226 -11.64615 -11.50779
-11.46214 -11.37633 -11.33369 -11.03294 -10.96354 -10.79240 -10.69274 -10.63092
-10.43464 -10.28588 -10.04134 -9.75327 -9.74470 -8.87318 -8.69646 -8.51065
-8.14902 -7.95744 -6.84215 -5.75719 -3.00419 1.37080 1.45304 3.41629
3.50590 3.52595 3.76459 4.22535 4.40632 4.61098 4.64901 4.73475
4.98502 5.04750 5.05857 5.17409 5.35233 5.36442 5.48475 5.50744
5.52539 5.66182 5.67892 5.74317 5.76838 5.81027 5.89715 5.96070
6.04568 6.07605 6.08889 6.17915 6.26308 6.32695 6.41723 6.44730
6.48625 6.53246 6.61279 6.61340 6.72995 6.87264 6.89235 6.94718
7.06089 7.13252 7.24905 7.58147 7.83657 8.31234 8.73826 9.22220
9.79401 9.95388 10.33581 11.34111
Molecular weight = 318.20amu
Principal moments of inertia in cm(-1)
A = 0.014713 B = 0.003163 C = 0.002800
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1902.653787 B = 8850.218058 C = 9999.279165
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.142 4.142
3 C 0.153 3.847
4 N -0.575 5.575
5 C -0.240 4.240
6 H 0.076 0.924
7 C -0.003 4.003
8 N -0.896 5.896
9 Si 0.898 3.102
10 H -0.280 1.280
11 H -0.291 1.291
12 H -0.295 1.295
13 C 0.164 3.836
14 C 0.532 3.468
15 O -0.533 6.533
16 N -0.744 5.744
17 C 0.189 3.811
18 H 0.083 0.917
19 C -0.150 4.150
20 C -0.079 4.079
21 C -0.110 4.110
22 C -0.117 4.117
23 C -0.093 4.093
24 C -0.083 4.083
25 C -0.146 4.146
26 C -0.116 4.116
27 C -0.109 4.109
28 H 0.049 0.951
29 H 0.046 0.954
30 H 0.044 0.956
31 H 0.051 0.949
32 H 0.060 0.940
33 H 0.044 0.956
34 H 0.034 0.966
35 H 0.250 0.750
36 H 0.034 0.966
37 H 0.102 0.898
38 H 0.384 0.616
39 H 0.050 0.950
40 H 0.047 0.953
41 H 0.075 0.925
42 H 0.121 0.879
43 H 0.118 0.882
44 H 0.069 0.931
45 H 0.069 0.931
46 H 0.055 0.945
47 H 0.055 0.945
48 H 0.055 0.945
49 H 0.119 0.881
50 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.691 2.909 -17.226 17.483
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.182 4.182
3 C 0.026 3.974
4 N -0.294 5.294
5 C -0.369 4.369
6 H 0.094 0.906
7 C -0.200 4.200
8 N -0.542 5.542
9 Si 0.729 3.271
10 H -0.206 1.206
11 H -0.218 1.218
12 H -0.222 1.222
13 C 0.033 3.967
14 C 0.319 3.681
15 O -0.406 6.406
16 N -0.400 5.400
17 C 0.083 3.917
18 H 0.101 0.899
19 C -0.208 4.208
20 C -0.080 4.080
21 C -0.129 4.129
22 C -0.135 4.135
23 C -0.093 4.093
24 C -0.120 4.120
25 C -0.204 4.204
26 C -0.134 4.134
27 C -0.127 4.127
28 H 0.068 0.932
29 H 0.066 0.934
30 H 0.063 0.937
31 H 0.070 0.930
32 H 0.079 0.921
33 H 0.063 0.937
34 H 0.053 0.947
35 H 0.061 0.939
36 H 0.052 0.948
37 H 0.120 0.880
38 H 0.217 0.783
39 H 0.069 0.931
40 H 0.066 0.934
41 H 0.094 0.906
42 H 0.139 0.861
43 H 0.136 0.864
44 H 0.087 0.913
45 H 0.088 0.912
46 H 0.074 0.926
47 H 0.074 0.926
48 H 0.075 0.925
49 H 0.137 0.863
50 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges -0.854 3.590 -16.615 17.019
hybrid contribution 1.040 -0.467 0.490 1.240
sum 0.186 3.123 -16.125 16.425
Atomic orbital electron populations
1.21724 0.97295 1.00398 1.01083 1.22116 0.93705 1.00737 1.01645
1.20760 0.84405 0.93045 0.99176 1.43902 0.99672 1.83751 1.02083
1.19256 0.89652 1.41595 0.86382 0.90594 1.24656 0.97289 0.99926
0.98125 1.69924 1.09224 1.40268 1.34777 0.86264 0.80316 0.78785
0.81752 1.20574 1.21801 1.22219 1.20685 0.97998 0.91354 0.86643
1.22058 0.74633 0.93788 0.77627 1.90496 1.51832 1.49010 1.49283
1.46380 1.61960 1.05463 1.26186 1.19508 0.98321 0.86083 0.87816
0.89902 1.22087 0.96789 0.99242 1.02688 1.20209 0.96974 0.94918
0.95900 1.21016 0.99725 0.98064 0.94066 1.20946 0.99674 0.98734
0.94157 1.19836 0.98586 0.95326 0.95562 1.20511 0.98628 1.01095
0.91805 1.21749 0.97331 1.00342 1.00952 1.20969 1.00273 0.97973
0.94177 1.20981 0.98760 0.98938 0.94058 0.93215 0.93443 0.93732
0.93035 0.92104 0.93744 0.94725 0.93897 0.94818 0.88029 0.78291
0.93066 0.93420 0.90578 0.86053 0.86413 0.91275 0.91219 0.92594
0.92618 0.92546 0.86341 0.85902
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.13 9.91 37.16 0.37 -1.76 16
2 C -0.14 -2.53 6.25 -26.73 -0.17 -2.70 16
3 C 0.15 3.26 5.67 -4.04 -0.02 3.24 16
4 N -0.58 -14.31 2.02 -174.61 -0.35 -14.66 16
5 C -0.24 -6.56 9.70 -15.06 -0.15 -6.71 16
6 H 0.08 2.08 7.94 -52.49 -0.42 1.66 16
7 C 0.00 -0.08 4.90 -17.43 -0.09 -0.17 16
8 N -0.90 -24.82 8.96 55.49 0.50 -24.33 16
9 Si 0.90 21.82 29.62 -169.99 -5.04 16.79 16
10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16
11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16
12 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16
13 C 0.16 3.78 5.42 -5.19 -0.03 3.75 16
14 C 0.53 12.43 5.86 -10.98 -0.06 12.36 16
15 O -0.53 -14.77 15.82 5.55 0.09 -14.68 16
16 N -0.74 -13.97 5.03 -54.93 -0.28 -14.25 16
17 C 0.19 3.25 2.78 -69.08 -0.19 3.06 16
18 H 0.08 1.58 7.44 -51.93 -0.39 1.20 16
19 C -0.15 -2.63 9.46 37.16 0.35 -2.28 16
20 C -0.08 -1.13 4.95 -104.62 -0.52 -1.65 16
21 C -0.11 -1.42 9.67 -39.58 -0.38 -1.80 16
22 C -0.12 -1.31 9.70 -39.58 -0.38 -1.70 16
23 C -0.09 -1.00 5.13 -104.62 -0.54 -1.54 16
24 C -0.08 -0.68 6.07 -27.88 -0.17 -0.85 16
25 C -0.15 -1.09 9.89 37.16 0.37 -0.73 16
26 C -0.12 -1.31 9.70 -39.58 -0.38 -1.69 16
27 C -0.11 -1.41 9.05 -39.58 -0.36 -1.76 16
28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16
29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16
30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16
31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16
32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16
33 H 0.04 0.98 8.06 -51.93 -0.42 0.56 16
34 H 0.03 0.72 8.06 -51.92 -0.42 0.30 16
35 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16
36 H 0.03 0.68 8.07 -51.93 -0.42 0.26 16
37 H 0.10 2.50 6.29 -51.93 -0.33 2.17 16
38 H 0.38 6.27 6.87 -40.82 -0.28 5.99 16
39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16
40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16
41 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16
42 H 0.12 1.44 8.04 -52.49 -0.42 1.02 16
43 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16
44 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16
45 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16
46 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16
47 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16
48 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
49 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16
50 H 0.12 1.52 6.92 -52.49 -0.36 1.15 16
LS Contribution 404.74 15.07 6.10 6.10
Total: -1.00 -31.50 404.74 -10.25 -41.76
By element:
Atomic # 1 Polarization: 15.11 SS G_CDS: -8.92 Total: 6.19 kcal
Atomic # 6 Polarization: -0.56 SS G_CDS: -2.35 Total: -2.91 kcal
Atomic # 7 Polarization: -53.11 SS G_CDS: -0.13 Total: -53.24 kcal
Atomic # 8 Polarization: -14.77 SS G_CDS: 0.09 Total: -14.68 kcal
Atomic # 14 Polarization: 21.82 SS G_CDS: -5.04 Total: 16.79 kcal
Total LS contribution 6.10 Total: 6.10 kcal
Total: -31.50 -10.25 -41.76 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000049981150.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.549 kcal
(2) G-P(sol) polarization free energy of solvation -31.503 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.047 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.254 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.757 kcal
(6) G-S(sol) free energy of system = (1) + (5) -4.207 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.09 seconds