Wall clock time and date at job start Tue Mar 31 2020 12:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47018 * 2 1 4 4 N 1.46506 * 109.47007 * 180.02562 * 3 2 1 5 5 C 1.46491 * 120.00196 * 89.99624 * 4 3 2 6 6 C 1.53006 * 109.47291 * 89.99821 * 5 4 3 7 7 C 1.39044 * 119.99367 * 269.99799 * 4 3 2 8 8 C 1.39220 * 119.93641 * 359.72498 * 7 4 3 9 9 C 1.37605 * 120.06764 * 179.76519 * 8 7 4 10 10 C 1.39798 * 119.93267 * 0.52937 * 9 8 7 11 11 C 1.47517 * 120.06962 * 179.74589 * 10 9 8 12 12 O 1.21601 * 120.00024 * 320.56695 * 11 10 9 13 13 N 1.34771 * 120.00421 * 140.56735 * 11 10 9 14 14 C 1.46500 * 119.99713 * 4.88375 * 13 11 10 15 15 C 1.46501 * 120.00403 * 184.87905 * 13 11 10 16 16 H 1.08999 * 109.46822 * 0.02562 * 15 13 11 17 17 C 1.53006 * 109.46851 * 120.00111 * 15 13 11 18 18 C 1.50695 * 109.47199 * 240.00285 * 15 13 11 19 19 H 1.07999 * 120.00400 * 359.97438 * 18 15 13 20 20 C 1.37884 * 119.99874 * 180.02562 * 18 15 13 21 21 N 1.31516 * 119.99903 * 179.97438 * 20 18 15 22 22 Si 1.86796 * 120.00046 * 359.97438 * 20 18 15 23 23 H 1.48503 * 109.46865 * 90.00226 * 22 20 18 24 24 H 1.48496 * 109.47255 * 210.00064 * 22 20 18 25 25 H 1.48498 * 109.46991 * 330.00457 * 22 20 18 26 26 C 1.39788 * 119.85919 * 359.72249 * 10 9 8 27 27 C 1.37609 * 119.93541 * 359.97438 * 26 10 9 28 28 H 1.08997 * 109.47162 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46923 * 300.00584 * 1 2 3 30 30 H 1.09007 * 109.47053 * 59.99989 * 1 2 3 31 31 H 1.08998 * 109.46574 * 240.00054 * 2 1 3 32 32 H 1.08993 * 109.47060 * 120.00027 * 2 1 3 33 33 H 1.08993 * 109.47266 * 60.00135 * 3 2 1 34 34 H 1.09000 * 109.46850 * 299.99913 * 3 2 1 35 35 H 1.09004 * 109.47282 * 330.00619 * 5 4 3 36 36 H 1.09002 * 109.47565 * 210.00248 * 5 4 3 37 37 H 1.09004 * 109.46305 * 60.00200 * 6 5 4 38 38 H 1.08993 * 109.47436 * 179.97438 * 6 5 4 39 39 H 1.09002 * 109.47165 * 300.00672 * 6 5 4 40 40 H 1.07996 * 119.96272 * 359.97438 * 8 7 4 41 41 H 1.08008 * 120.03412 * 180.25297 * 9 8 7 42 42 H 1.09004 * 109.47277 * 85.68470 * 14 13 11 43 43 H 1.09002 * 109.47023 * 205.68382 * 14 13 11 44 44 H 1.08999 * 109.46925 * 325.68152 * 14 13 11 45 45 H 1.08999 * 109.47171 * 60.00503 * 17 15 13 46 46 H 1.09002 * 109.46527 * 180.02562 * 17 15 13 47 47 H 1.08996 * 109.47370 * 299.99938 * 17 15 13 48 48 H 0.96998 * 119.99862 * 179.97438 * 21 20 18 49 49 H 1.08008 * 120.03402 * 179.97438 * 26 10 9 50 50 H 1.07999 * 119.96504 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.2371 1.4426 -1.2696 6 6 4.4919 2.8852 -1.7113 7 6 4.2007 1.4424 1.2033 8 6 3.5037 1.4480 2.4084 9 6 4.1893 1.4430 3.6015 10 6 5.5873 1.4434 3.6027 11 6 6.3254 1.4437 4.8799 12 8 5.9251 2.1126 5.8133 13 7 7.4433 0.7028 5.0125 14 6 7.9853 -0.0181 3.8580 15 6 8.1165 0.6183 6.3109 16 1 7.5715 1.2152 7.0422 17 6 8.1556 -0.8404 6.7711 18 6 9.5235 1.1423 6.1822 19 1 9.8808 1.5020 5.2286 20 6 10.3552 1.1617 7.2819 21 7 11.5833 1.6186 7.1695 22 14 9.7376 0.5390 8.9311 23 1 10.0238 -0.9133 9.0506 24 1 10.4249 1.2706 10.0254 25 1 8.2730 0.7645 9.0284 26 6 6.2842 1.4431 2.3909 27 6 5.5929 1.4418 1.2011 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6768 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.6477 0.9289 -2.0291 36 1 5.1896 0.9287 -1.1397 37 1 5.0813 3.3989 -0.9517 38 1 5.0369 2.8853 -2.6552 39 1 3.5394 3.3991 -1.8411 40 1 2.4237 1.4529 2.4069 41 1 3.6479 1.4433 4.5361 42 1 8.6321 0.6467 3.2855 43 1 8.5613 -0.8766 4.2035 44 1 7.1659 -0.3608 3.2262 45 1 8.7003 -1.4376 6.0398 46 1 8.6561 -0.9032 7.7373 47 1 7.1379 -1.2195 6.8641 48 1 12.1682 1.6326 7.9431 49 1 7.3643 1.4438 2.3885 50 1 6.1309 1.4419 0.2646 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078420007.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:36 Heat of formation + Delta-G solvation = -12.821308 kcal Electronic energy + Delta-G solvation = -27081.562385 eV Core-core repulsion = 23494.493875 eV Total energy + Delta-G solvation = -3587.068510 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.38636 -40.18922 -37.71765 -37.22560 -34.84265 -34.66136 -33.00681 -31.82060 -31.68280 -29.76912 -27.88263 -27.19271 -26.78612 -25.03564 -23.59055 -23.10756 -22.40954 -21.23608 -20.33448 -18.96038 -18.45964 -17.89305 -17.46142 -16.92913 -16.64413 -16.04932 -15.83779 -15.46602 -15.30681 -15.09925 -14.99344 -14.64666 -14.56636 -14.14029 -14.10473 -13.99516 -13.72447 -13.59900 -13.44185 -13.30477 -13.05489 -13.00674 -12.88592 -12.72056 -12.64029 -12.40606 -12.16936 -12.05910 -11.97602 -11.60139 -11.59176 -11.46960 -11.34458 -10.84336 -10.79103 -10.60229 -9.90018 -9.41575 -8.35467 -8.21262 -6.39754 0.23829 0.51934 1.25112 1.35058 1.44285 1.92411 2.14417 2.27641 2.31714 2.94099 2.99607 3.77188 3.82353 3.91291 4.06937 4.11523 4.20076 4.34296 4.41856 4.43362 4.43910 4.45533 4.49000 4.54315 4.58345 4.59291 4.64212 4.71574 4.75160 4.77986 4.91209 4.95410 4.96613 4.99822 5.04668 5.12982 5.22929 5.25917 5.26595 5.30370 5.37161 5.43252 5.47096 5.48696 5.60916 5.72730 5.81287 6.21419 6.37303 6.52870 6.61084 6.73491 7.21122 7.37869 8.80730 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.023748 B = 0.002797 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.774727 B =10006.713428 C =10610.849932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.116 3.884 4 N -0.618 5.618 5 C 0.111 3.889 6 C -0.169 4.169 7 C 0.243 3.757 8 C -0.205 4.205 9 C -0.027 4.027 10 C -0.209 4.209 11 C 0.546 3.454 12 O -0.606 6.606 13 N -0.591 5.591 14 C 0.084 3.916 15 C 0.230 3.770 16 H 0.029 0.971 17 C -0.153 4.153 18 C -0.526 4.526 19 H 0.044 0.956 20 C 0.023 3.977 21 N -0.939 5.939 22 Si 0.942 3.058 23 H -0.250 1.250 24 H -0.294 1.294 25 H -0.264 1.264 26 C -0.043 4.043 27 C -0.203 4.203 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.042 0.958 38 H 0.079 0.921 39 H 0.056 0.944 40 H 0.145 0.855 41 H 0.117 0.883 42 H 0.053 0.947 43 H 0.075 0.925 44 H 0.093 0.907 45 H 0.072 0.928 46 H 0.044 0.956 47 H 0.055 0.945 48 H 0.269 0.731 49 H 0.134 0.866 50 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.163 -5.558 -22.214 31.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.177 4.177 3 C -0.006 4.006 4 N -0.325 5.325 5 C -0.011 4.011 6 C -0.228 4.228 7 C 0.138 3.862 8 C -0.227 4.227 9 C -0.047 4.047 10 C -0.214 4.214 11 C 0.337 3.663 12 O -0.490 6.490 13 N -0.320 5.320 14 C -0.057 4.057 15 C 0.127 3.873 16 H 0.047 0.953 17 C -0.211 4.211 18 C -0.564 4.564 19 H 0.063 0.937 20 C -0.176 4.176 21 N -0.578 5.578 22 Si 0.768 3.232 23 H -0.176 1.176 24 H -0.222 1.222 25 H -0.189 1.189 26 C -0.062 4.062 27 C -0.225 4.225 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.061 0.939 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.163 0.837 41 H 0.135 0.865 42 H 0.072 0.928 43 H 0.094 0.906 44 H 0.111 0.889 45 H 0.091 0.909 46 H 0.062 0.938 47 H 0.074 0.926 48 H 0.078 0.922 49 H 0.152 0.848 50 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -21.275 -5.213 -21.865 30.949 hybrid contribution 0.547 0.191 1.327 1.448 sum -20.728 -5.022 -20.538 29.608 Atomic orbital electron populations 1.21695 0.94376 1.02202 1.02389 1.21905 0.96636 0.96999 1.02126 1.21683 0.78294 0.97018 1.03629 1.46777 1.05464 1.77557 1.02690 1.21626 0.97769 0.97330 0.84362 1.22192 1.01993 0.96886 1.01702 1.18043 0.91285 0.90390 0.86514 1.20674 1.00416 1.11603 0.90023 1.20885 0.91857 0.93420 0.98512 1.19495 0.94622 1.15353 0.91918 1.19004 0.80460 0.78477 0.88364 1.90667 1.70005 1.44453 1.43882 1.47833 1.25023 1.47314 1.11829 1.22069 0.99334 0.96682 0.87660 1.18996 0.91485 0.94206 0.82650 0.95331 1.22316 1.00680 0.97430 1.00671 1.21351 0.96203 1.41870 0.96987 0.93730 1.25653 0.94672 0.94989 1.02303 1.70000 1.07821 1.47972 1.32049 0.85970 0.78878 0.79134 0.79179 1.17558 1.22178 1.18916 1.21427 1.00495 0.93480 0.90795 1.20759 0.92249 1.11175 0.98358 0.92467 0.92546 0.91670 0.91602 0.93022 0.90684 0.89033 0.88810 0.90093 0.93877 0.90264 0.92508 0.83750 0.86486 0.92824 0.90636 0.88880 0.90867 0.93751 0.92602 0.92219 0.84802 0.83322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 71.98 0.71 -0.48 16 2 C -0.14 -1.40 6.26 30.60 0.19 -1.21 16 3 C 0.12 1.23 5.15 86.38 0.44 1.68 16 4 N -0.62 -8.71 2.59 -697.31 -1.81 -10.51 16 5 C 0.11 1.11 5.86 86.38 0.51 1.62 16 6 C -0.17 -1.74 10.24 71.98 0.74 -1.00 16 7 C 0.24 4.97 6.55 38.47 0.25 5.22 16 8 C -0.20 -4.68 9.18 22.36 0.21 -4.48 16 9 C -0.03 -0.81 9.62 22.50 0.22 -0.59 16 10 C -0.21 -7.23 5.23 -20.08 -0.11 -7.34 16 11 C 0.55 24.60 7.34 86.69 0.64 25.24 16 12 O -0.61 -32.61 16.25 -4.03 -0.07 -32.67 16 13 N -0.59 -26.24 2.75 -830.57 -2.29 -28.52 16 14 C 0.08 2.89 8.09 127.77 1.03 3.93 16 15 C 0.23 11.75 2.22 44.25 0.10 11.85 16 16 H 0.03 1.66 5.97 -2.39 -0.01 1.64 16 17 C -0.15 -6.62 8.66 71.98 0.62 -6.00 16 18 C -0.53 -30.77 8.95 25.60 0.23 -30.54 16 19 H 0.04 2.83 7.89 -2.91 -0.02 2.81 16 20 C 0.02 1.33 5.45 84.66 0.46 1.80 16 21 N -0.94 -58.88 13.96 21.45 0.30 -58.58 16 22 Si 0.94 46.41 24.37 68.60 1.67 48.08 16 23 H -0.25 -11.21 6.87 99.48 0.68 -10.52 16 24 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 25 H -0.26 -13.01 6.53 99.48 0.65 -12.36 16 26 C -0.04 -1.21 7.54 22.50 0.17 -1.04 16 27 C -0.20 -4.44 9.18 22.36 0.21 -4.24 16 28 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.39 8.14 -2.38 -0.02 0.37 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 0.86 6.16 -2.39 -0.01 0.85 16 34 H 0.09 0.67 8.07 -2.39 -0.02 0.65 16 35 H 0.09 0.60 8.07 -2.38 -0.02 0.58 16 36 H 0.08 0.80 6.17 -2.39 -0.01 0.79 16 37 H 0.04 0.62 8.14 -2.38 -0.02 0.60 16 38 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.14 2.61 6.11 -2.91 -0.02 2.59 16 41 H 0.12 3.63 8.05 -2.91 -0.02 3.61 16 42 H 0.05 1.81 6.89 -2.38 -0.02 1.80 16 43 H 0.07 2.52 6.43 -2.39 -0.02 2.50 16 44 H 0.09 2.59 5.81 -2.39 -0.01 2.57 16 45 H 0.07 2.89 6.66 -2.39 -0.02 2.87 16 46 H 0.04 1.96 3.27 -2.39 -0.01 1.95 16 47 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 48 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 49 H 0.13 3.76 5.32 -2.91 -0.02 3.74 16 50 H 0.15 2.48 6.11 -2.91 -0.02 2.46 16 Total: -1.00 -76.81 384.44 5.28 -71.53 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.85 Total: 16.27 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: 6.62 Total: -5.59 kcal Atomic # 7 Polarization: -93.82 SS G_CDS: -3.79 Total: -97.61 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -0.07 Total: -32.67 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.67 Total: 48.08 kcal Total: -76.81 5.28 -71.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078420007.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.710 kcal (2) G-P(sol) polarization free energy of solvation -76.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds