Wall clock time and date at job start Tue Mar 31 2020 12:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47299 * 2 1 4 4 N 1.46498 * 109.47070 * 180.02562 * 3 2 1 5 5 C 1.46506 * 120.00239 * 90.00054 * 4 3 2 6 6 C 1.50703 * 109.46877 * 269.72094 * 5 4 3 7 7 C 1.38225 * 119.99955 * 269.72609 * 6 5 4 8 8 C 1.38237 * 119.99986 * 179.74477 * 7 6 5 9 9 C 1.38244 * 119.99838 * 0.54950 * 8 7 6 10 10 C 1.50698 * 120.00046 * 179.72528 * 9 8 7 11 11 C 1.38233 * 119.99743 * 359.70647 * 9 8 7 12 12 C 1.38234 * 120.00154 * 0.02562 * 11 9 8 13 13 C 1.34777 * 119.99828 * 269.71859 * 4 3 2 14 14 O 1.21284 * 119.99754 * 180.27842 * 13 4 3 15 15 C 1.50696 * 120.00137 * 0.28058 * 13 4 3 16 16 N 1.46896 * 109.47452 * 179.97438 * 15 13 4 17 17 C 1.46897 * 110.99846 * 66.04628 * 16 15 13 18 18 C 1.46896 * 111.00398 * 189.99733 * 16 15 13 19 19 C 1.50696 * 109.47392 * 169.99839 * 18 16 15 20 20 H 1.08000 * 120.00062 * 0.02562 * 19 18 16 21 21 C 1.37883 * 120.00311 * 180.02562 * 19 18 16 22 22 N 1.31513 * 119.99702 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00180 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47111 * 89.99818 * 23 21 19 25 25 H 1.48494 * 109.47304 * 210.00066 * 23 21 19 26 26 H 1.48501 * 109.47044 * 329.99843 * 23 21 19 27 27 H 1.09001 * 109.46807 * 60.00401 * 1 2 3 28 28 H 1.09000 * 109.47132 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47609 * 299.99860 * 1 2 3 30 30 H 1.09002 * 109.47518 * 239.99656 * 2 1 3 31 31 H 1.09001 * 109.47089 * 120.00327 * 2 1 3 32 32 H 1.08993 * 109.47367 * 59.99390 * 3 2 1 33 33 H 1.09001 * 109.46864 * 299.99564 * 3 2 1 34 34 H 1.09000 * 109.46803 * 29.71572 * 5 4 3 35 35 H 1.09000 * 109.47214 * 149.72366 * 5 4 3 36 36 H 1.07995 * 120.00468 * 359.97438 * 7 6 5 37 37 H 1.08005 * 120.00478 * 180.27271 * 8 7 6 38 38 H 1.09002 * 109.47117 * 269.97810 * 10 9 8 39 39 H 1.09003 * 109.47173 * 29.97356 * 10 9 8 40 40 H 1.09001 * 109.47173 * 149.97950 * 10 9 8 41 41 H 1.07999 * 120.00214 * 180.02562 * 11 9 8 42 42 H 1.08003 * 120.00112 * 179.97438 * 12 11 9 43 43 H 1.09004 * 109.47043 * 299.99732 * 15 13 4 44 44 H 1.09000 * 109.46978 * 59.99653 * 15 13 4 45 45 H 1.09000 * 109.47532 * 60.00010 * 17 16 15 46 46 H 1.08997 * 109.47489 * 180.02562 * 17 16 15 47 47 H 1.09007 * 109.46969 * 300.00108 * 17 16 15 48 48 H 1.08998 * 109.47583 * 290.00558 * 18 16 15 49 49 H 1.09001 * 109.46998 * 50.00308 * 18 16 15 50 50 H 0.96995 * 119.99879 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.2370 1.4426 -1.2697 6 6 4.4939 0.0218 -1.7015 7 6 5.6513 -0.6222 -1.3061 8 6 5.8845 -1.9272 -1.6979 9 6 4.9655 -2.5844 -2.4945 10 6 5.2226 -4.0050 -2.9267 11 6 3.8106 -1.9386 -2.8943 12 6 3.5748 -0.6354 -2.4979 13 6 4.1793 1.4479 1.1663 14 8 5.3921 1.4530 1.1658 15 6 3.4264 1.4478 2.4717 16 7 4.3814 1.4538 3.5879 17 6 5.1419 2.7101 3.6232 18 6 3.6984 1.2158 4.8664 19 6 4.7224 0.9846 5.9476 20 1 5.7753 1.0121 5.7089 21 6 4.3151 0.7378 7.2416 22 7 3.0329 0.7038 7.5321 23 14 5.5844 0.4520 8.5819 24 1 5.9455 1.7498 9.2066 25 1 5.0193 -0.4540 9.6138 26 1 6.7978 -0.1672 7.9905 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.6454 1.9521 -2.0302 35 1 5.1873 1.9606 -1.1409 36 1 6.3717 -0.1071 -0.6881 37 1 6.7868 -2.4319 -1.3853 38 1 5.7671 -4.0046 -3.8710 39 1 5.8144 -4.5147 -2.1663 40 1 4.2724 -4.5233 -3.0555 41 1 3.0924 -2.4521 -3.5163 42 1 2.6726 -0.1307 -2.8106 43 1 2.7960 2.3353 2.5277 44 1 2.8035 0.5553 2.5317 45 1 4.4549 3.5473 3.7465 46 1 5.8417 2.6878 4.4586 47 1 5.6936 2.8271 2.6905 48 1 3.0908 2.0842 5.1211 49 1 3.0584 0.3378 4.7785 50 1 2.7464 0.5298 8.4423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078645773.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:05 Heat of formation + Delta-G solvation = -12.133713 kcal Electronic energy + Delta-G solvation = -27306.653689 eV Core-core repulsion = 23719.614995 eV Total energy + Delta-G solvation = -3587.038694 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.21081 -39.04303 -36.53814 -35.69022 -33.80741 -32.46150 -32.41034 -30.94419 -29.33300 -27.75486 -26.85275 -26.17980 -24.80870 -23.57948 -22.74031 -21.82761 -21.05081 -20.43879 -18.81557 -16.98934 -16.61575 -16.23741 -15.81770 -15.47218 -15.29915 -14.94743 -14.64684 -14.50313 -14.01992 -13.89200 -13.82239 -13.62359 -13.43541 -13.15902 -12.89197 -12.66389 -12.44645 -12.26199 -12.20170 -11.97155 -11.81815 -11.68802 -11.46573 -11.34396 -11.14121 -11.00758 -10.95211 -10.78749 -10.70534 -10.64934 -10.46913 -9.93069 -9.43866 -9.08886 -8.91279 -8.65224 -8.47033 -8.40941 -7.18399 -6.00424 -4.00716 1.21818 1.39221 2.97224 3.10381 3.34997 3.40720 3.46855 3.80245 4.45574 4.60531 4.69413 4.76667 4.81681 4.89672 4.96645 4.99846 5.09728 5.14403 5.23912 5.30704 5.35940 5.36052 5.39864 5.42928 5.51855 5.62386 5.66012 5.68944 5.71998 5.82407 5.83526 5.94125 6.02871 6.04299 6.06400 6.24584 6.35392 6.36984 6.43717 6.55582 6.59467 6.64193 6.93742 6.98610 7.25994 7.33224 7.50482 7.83963 8.08465 8.22462 8.50980 8.60896 9.07391 9.63221 11.10722 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.013368 B = 0.003174 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.987973 B = 8819.830487 C = 9426.490577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.151 4.151 3 C 0.111 3.889 4 N -0.617 5.617 5 C 0.157 3.843 6 C -0.108 4.108 7 C -0.087 4.087 8 C -0.123 4.123 9 C -0.087 4.087 10 C -0.114 4.114 11 C -0.128 4.128 12 C -0.103 4.103 13 C 0.520 3.480 14 O -0.515 6.515 15 C 0.040 3.960 16 N -0.523 5.523 17 C 0.034 3.966 18 C 0.194 3.806 19 C -0.504 4.504 20 H 0.065 0.935 21 C 0.054 3.946 22 N -0.901 5.901 23 Si 0.898 3.102 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.272 1.272 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.130 0.870 37 H 0.120 0.880 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.049 0.951 44 H 0.095 0.905 45 H 0.003 0.997 46 H 0.073 0.927 47 H 0.064 0.936 48 H -0.009 1.009 49 H 0.029 0.971 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.530 -2.222 -23.860 24.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.189 4.189 3 C -0.013 4.013 4 N -0.352 5.352 5 C 0.034 3.966 6 C -0.109 4.109 7 C -0.106 4.106 8 C -0.141 4.141 9 C -0.087 4.087 10 C -0.171 4.171 11 C -0.146 4.146 12 C -0.122 4.122 13 C 0.308 3.692 14 O -0.389 6.389 15 C -0.092 4.092 16 N -0.248 5.248 17 C -0.114 4.114 18 C 0.069 3.931 19 C -0.542 4.542 20 H 0.083 0.917 21 C -0.146 4.146 22 N -0.541 5.541 23 Si 0.726 3.274 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.197 1.197 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.147 0.853 37 H 0.138 0.862 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.067 0.933 44 H 0.113 0.887 45 H 0.022 0.978 46 H 0.092 0.908 47 H 0.083 0.917 48 H 0.009 0.991 49 H 0.047 0.953 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.643 -2.608 -23.740 24.029 hybrid contribution -0.248 0.357 0.978 1.071 sum -2.891 -2.250 -22.762 23.055 Atomic orbital electron populations 1.21700 0.95256 1.01966 1.01795 1.22113 0.95999 0.97291 1.03545 1.21671 0.79379 0.97116 1.03088 1.48111 1.06456 1.75250 1.05387 1.20276 0.98436 0.92606 0.85241 1.20223 0.95030 0.97205 0.98430 1.21245 0.97123 0.94567 0.97649 1.21077 0.99377 0.95011 0.98603 1.19925 0.94790 0.96290 0.97712 1.20788 1.02224 0.92584 1.01479 1.20933 0.97330 0.95070 1.01285 1.20943 0.98446 0.94790 0.98020 1.20986 0.88298 0.74894 0.85013 1.90613 1.13900 1.47540 1.86800 1.21997 0.94922 1.01930 0.90303 1.61851 1.24990 1.34299 1.03650 1.22354 0.97865 0.88704 1.02518 1.19772 0.93885 0.95657 0.83796 1.21161 0.93532 1.47565 0.91986 0.91701 1.24980 0.95380 0.95599 0.98684 1.69956 1.14040 1.50239 1.19828 0.86482 0.81569 0.78017 0.81303 1.20745 1.21276 1.19699 0.92872 0.92530 0.92359 0.90983 0.91386 0.90103 0.90683 0.90199 0.89184 0.85253 0.86205 0.91365 0.91538 0.91695 0.86424 0.86359 0.93347 0.88712 0.97823 0.90803 0.91738 0.99081 0.95274 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.15 0.37 -0.89 16 2 C -0.15 -1.53 6.26 -26.73 -0.17 -1.70 16 3 C 0.11 1.11 5.26 -4.04 -0.02 1.09 16 4 N -0.62 -7.89 2.46 -175.06 -0.43 -8.32 16 5 C 0.16 1.77 5.58 -5.19 -0.03 1.74 16 6 C -0.11 -1.27 5.39 -104.62 -0.56 -1.84 16 7 C -0.09 -1.16 9.70 -39.59 -0.38 -1.55 16 8 C -0.12 -1.48 9.70 -39.58 -0.38 -1.86 16 9 C -0.09 -0.93 5.88 -104.62 -0.62 -1.54 16 10 C -0.11 -0.92 10.01 36.00 0.36 -0.56 16 11 C -0.13 -1.28 9.70 -39.58 -0.38 -1.67 16 12 C -0.10 -1.05 7.56 -39.58 -0.30 -1.35 16 13 C 0.52 8.85 7.40 -10.99 -0.08 8.77 16 14 O -0.51 -10.32 13.44 5.55 0.07 -10.24 16 15 C 0.04 0.74 4.00 -4.98 -0.02 0.72 16 16 N -0.52 -12.09 4.49 -245.83 -1.10 -13.20 16 17 C 0.03 0.74 9.03 60.06 0.54 1.28 16 18 C 0.19 5.16 4.72 -4.98 -0.02 5.13 16 19 C -0.50 -14.58 8.46 -34.44 -0.29 -14.87 16 20 H 0.06 1.89 7.12 -52.49 -0.37 1.52 16 21 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 22 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 23 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.73 5.27 -51.93 -0.27 0.46 16 31 H 0.07 0.85 7.24 -51.93 -0.38 0.48 16 32 H 0.08 0.82 6.43 -51.93 -0.33 0.49 16 33 H 0.07 0.57 7.89 -51.93 -0.41 0.16 16 34 H 0.08 0.67 7.83 -51.93 -0.41 0.27 16 35 H 0.09 1.13 7.36 -51.93 -0.38 0.75 16 36 H 0.13 1.91 7.61 -52.49 -0.40 1.51 16 37 H 0.12 1.30 8.06 -52.48 -0.42 0.87 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 40 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 41 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.12 0.96 7.72 -52.48 -0.40 0.55 16 43 H 0.05 0.82 7.37 -51.93 -0.38 0.44 16 44 H 0.09 1.69 7.00 -51.93 -0.36 1.33 16 45 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 46 H 0.07 1.70 6.76 -51.93 -0.35 1.35 16 47 H 0.06 1.34 5.88 -51.92 -0.31 1.04 16 48 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 49 H 0.03 0.81 7.93 -51.93 -0.41 0.40 16 50 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 397.40 15.07 5.99 5.99 Total: -1.00 -32.96 397.40 -10.38 -43.34 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -8.53 Total: -0.81 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -2.09 Total: -7.62 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: -0.80 Total: -47.74 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.07 Total: -10.24 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.96 -10.38 -43.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078645773.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.203 kcal (2) G-P(sol) polarization free energy of solvation -32.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds