Wall clock time and date at job start Tue Mar 31 2020 12:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47299 * 2 1 4 4 N 1.46498 * 109.47070 * 180.02562 * 3 2 1 5 5 C 1.46506 * 120.00239 * 90.00054 * 4 3 2 6 6 C 1.50703 * 109.46877 * 269.72094 * 5 4 3 7 7 C 1.38225 * 119.99955 * 269.72609 * 6 5 4 8 8 C 1.38237 * 119.99986 * 179.74477 * 7 6 5 9 9 C 1.38244 * 119.99838 * 0.54950 * 8 7 6 10 10 C 1.50698 * 120.00046 * 179.72528 * 9 8 7 11 11 C 1.38233 * 119.99743 * 359.70647 * 9 8 7 12 12 C 1.38234 * 120.00154 * 0.02562 * 11 9 8 13 13 C 1.34777 * 119.99828 * 269.71859 * 4 3 2 14 14 O 1.21284 * 119.99754 * 180.27842 * 13 4 3 15 15 C 1.50696 * 120.00137 * 0.28058 * 13 4 3 16 16 N 1.46896 * 109.47452 * 179.97438 * 15 13 4 17 17 C 1.46897 * 110.99846 * 66.04628 * 16 15 13 18 18 C 1.46896 * 111.00398 * 189.99733 * 16 15 13 19 19 C 1.50696 * 109.47392 * 169.99839 * 18 16 15 20 20 H 1.08000 * 120.00062 * 0.02562 * 19 18 16 21 21 C 1.37883 * 120.00311 * 180.02562 * 19 18 16 22 22 N 1.31513 * 119.99702 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00180 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47111 * 89.99818 * 23 21 19 25 25 H 1.48494 * 109.47304 * 210.00066 * 23 21 19 26 26 H 1.48501 * 109.47044 * 329.99843 * 23 21 19 27 27 H 1.09001 * 109.46807 * 60.00401 * 1 2 3 28 28 H 1.09000 * 109.47132 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47609 * 299.99860 * 1 2 3 30 30 H 1.09002 * 109.47518 * 239.99656 * 2 1 3 31 31 H 1.09001 * 109.47089 * 120.00327 * 2 1 3 32 32 H 1.08993 * 109.47367 * 59.99390 * 3 2 1 33 33 H 1.09001 * 109.46864 * 299.99564 * 3 2 1 34 34 H 1.09000 * 109.46803 * 29.71572 * 5 4 3 35 35 H 1.09000 * 109.47214 * 149.72366 * 5 4 3 36 36 H 1.07995 * 120.00468 * 359.97438 * 7 6 5 37 37 H 1.08005 * 120.00478 * 180.27271 * 8 7 6 38 38 H 1.09002 * 109.47117 * 269.97810 * 10 9 8 39 39 H 1.09003 * 109.47173 * 29.97356 * 10 9 8 40 40 H 1.09001 * 109.47173 * 149.97950 * 10 9 8 41 41 H 1.07999 * 120.00214 * 180.02562 * 11 9 8 42 42 H 1.08003 * 120.00112 * 179.97438 * 12 11 9 43 43 H 1.09004 * 109.47043 * 299.99732 * 15 13 4 44 44 H 1.09000 * 109.46978 * 59.99653 * 15 13 4 45 45 H 1.09000 * 109.47532 * 60.00010 * 17 16 15 46 46 H 1.08997 * 109.47489 * 180.02562 * 17 16 15 47 47 H 1.09007 * 109.46969 * 300.00108 * 17 16 15 48 48 H 1.08998 * 109.47583 * 290.00558 * 18 16 15 49 49 H 1.09001 * 109.46998 * 50.00308 * 18 16 15 50 50 H 0.96995 * 119.99879 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.2370 1.4426 -1.2697 6 6 4.4939 0.0218 -1.7015 7 6 5.6513 -0.6222 -1.3061 8 6 5.8845 -1.9272 -1.6979 9 6 4.9655 -2.5844 -2.4945 10 6 5.2226 -4.0050 -2.9267 11 6 3.8106 -1.9386 -2.8943 12 6 3.5748 -0.6354 -2.4979 13 6 4.1793 1.4479 1.1663 14 8 5.3921 1.4530 1.1658 15 6 3.4264 1.4478 2.4717 16 7 4.3814 1.4538 3.5879 17 6 5.1419 2.7101 3.6232 18 6 3.6984 1.2158 4.8664 19 6 4.7224 0.9846 5.9476 20 1 5.7753 1.0121 5.7089 21 6 4.3151 0.7378 7.2416 22 7 3.0329 0.7038 7.5321 23 14 5.5844 0.4520 8.5819 24 1 5.9455 1.7498 9.2066 25 1 5.0193 -0.4540 9.6138 26 1 6.7978 -0.1672 7.9905 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.6454 1.9521 -2.0302 35 1 5.1873 1.9606 -1.1409 36 1 6.3717 -0.1071 -0.6881 37 1 6.7868 -2.4319 -1.3853 38 1 5.7671 -4.0046 -3.8710 39 1 5.8144 -4.5147 -2.1663 40 1 4.2724 -4.5233 -3.0555 41 1 3.0924 -2.4521 -3.5163 42 1 2.6726 -0.1307 -2.8106 43 1 2.7960 2.3353 2.5277 44 1 2.8035 0.5553 2.5317 45 1 4.4549 3.5473 3.7465 46 1 5.8417 2.6878 4.4586 47 1 5.6936 2.8271 2.6905 48 1 3.0908 2.0842 5.1211 49 1 3.0584 0.3378 4.7785 50 1 2.7464 0.5298 8.4423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078645773.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:05 Heat of formation + Delta-G solvation = -30.892950 kcal Electronic energy + Delta-G solvation = -27307.467151 eV Core-core repulsion = 23719.614995 eV Total energy + Delta-G solvation = -3587.852155 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.34791 -40.06177 -37.97381 -37.13425 -34.78956 -34.48561 -33.31242 -31.79421 -30.60133 -29.30392 -28.50637 -27.02063 -26.31083 -25.04219 -23.59053 -22.76491 -22.45607 -21.68017 -20.05391 -18.60311 -18.12234 -17.49350 -16.98678 -16.69725 -16.49214 -16.15796 -16.03475 -15.69241 -15.45478 -15.23663 -15.15601 -14.56286 -14.32835 -14.27267 -14.10867 -13.90111 -13.64263 -13.41338 -13.30067 -13.01253 -12.98471 -12.83645 -12.73679 -12.68657 -12.62285 -12.49231 -12.30177 -12.23565 -11.99269 -11.93097 -11.77282 -11.50492 -11.44767 -10.68538 -10.61401 -9.78364 -9.70994 -9.38347 -9.02367 -8.22507 -6.31737 0.35486 0.52295 1.39577 1.40985 1.53108 1.64554 2.00965 2.40116 2.91172 3.09835 3.32633 3.59547 3.87140 3.92920 3.99976 4.08452 4.14087 4.16563 4.24503 4.29838 4.35966 4.46796 4.55398 4.56270 4.59598 4.65038 4.66280 4.73503 4.76453 4.82410 4.88425 4.97277 4.98771 5.08383 5.12510 5.19869 5.22587 5.24356 5.27977 5.29657 5.47329 5.52092 5.61715 5.64292 5.72100 5.73024 5.99529 6.14925 6.26763 6.31903 6.58852 6.82610 7.26362 7.37465 8.88556 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.013368 B = 0.003174 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.987973 B = 8819.830487 C = 9426.490577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.146 4.146 3 C 0.104 3.896 4 N -0.604 5.604 5 C 0.157 3.843 6 C -0.118 4.118 7 C -0.114 4.114 8 C -0.142 4.142 9 C -0.093 4.093 10 C -0.113 4.113 11 C -0.130 4.130 12 C -0.097 4.097 13 C 0.520 3.480 14 O -0.554 6.554 15 C 0.041 3.959 16 N -0.542 5.542 17 C 0.044 3.956 18 C 0.211 3.789 19 C -0.527 4.527 20 H 0.056 0.944 21 C 0.006 3.994 22 N -0.930 5.930 23 Si 0.968 3.032 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.034 0.966 32 H 0.079 0.921 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.120 0.880 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.146 0.854 42 H 0.149 0.851 43 H 0.067 0.933 44 H 0.096 0.904 45 H 0.013 0.987 46 H 0.054 0.946 47 H 0.073 0.927 48 H -0.029 1.029 49 H 0.009 0.991 50 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.030 -2.381 -25.877 26.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.184 4.184 3 C -0.018 4.018 4 N -0.336 5.336 5 C 0.035 3.965 6 C -0.119 4.119 7 C -0.132 4.132 8 C -0.160 4.160 9 C -0.093 4.093 10 C -0.169 4.169 11 C -0.147 4.147 12 C -0.115 4.115 13 C 0.308 3.692 14 O -0.431 6.431 15 C -0.090 4.090 16 N -0.267 5.267 17 C -0.104 4.104 18 C 0.085 3.915 19 C -0.566 4.566 20 H 0.074 0.926 21 C -0.192 4.192 22 N -0.571 5.571 23 Si 0.792 3.208 24 H -0.196 1.196 25 H -0.203 1.203 26 H -0.195 1.195 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.053 0.947 32 H 0.097 0.903 33 H 0.133 0.867 34 H 0.139 0.861 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.138 0.862 38 H 0.100 0.900 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.164 0.836 42 H 0.167 0.833 43 H 0.085 0.915 44 H 0.114 0.886 45 H 0.032 0.968 46 H 0.073 0.927 47 H 0.092 0.908 48 H -0.011 1.011 49 H 0.027 0.973 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.177 -2.762 -25.802 26.284 hybrid contribution 0.160 0.371 1.501 1.555 sum -4.017 -2.390 -24.301 24.746 Atomic orbital electron populations 1.21671 0.93612 1.02263 1.02726 1.22046 0.97329 0.96907 1.02145 1.21967 0.77283 0.97524 1.04991 1.48064 1.07741 1.73219 1.04625 1.20445 0.98289 0.92741 0.85025 1.20280 0.94981 0.97451 0.99173 1.21196 0.97895 0.95437 0.98708 1.21211 1.00265 0.94888 0.99668 1.20268 0.94637 0.97490 0.96907 1.20832 1.03177 0.90990 1.01933 1.21330 0.97330 0.95162 1.00926 1.21245 0.98704 0.94869 0.96720 1.20672 0.87697 0.75084 0.85748 1.90601 1.15337 1.49761 1.87402 1.22017 0.94459 1.02809 0.89740 1.61697 1.26138 1.35406 1.03417 1.22229 0.97556 0.88471 1.02112 1.19407 0.92979 0.93769 0.85304 1.21425 0.93533 1.48322 0.93285 0.92604 1.25846 0.97507 0.94926 1.00966 1.70057 1.15820 1.50513 1.20677 0.85408 0.78815 0.78374 0.78193 1.19602 1.20269 1.19501 0.90456 0.92613 0.92896 0.90517 0.94672 0.90303 0.86711 0.86132 0.91087 0.88152 0.86243 0.90045 0.91781 0.90246 0.83610 0.83316 0.91487 0.88642 0.96842 0.92722 0.90841 1.01088 0.97332 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.91 71.98 0.71 -1.34 16 2 C -0.15 -2.67 6.26 30.59 0.19 -2.48 16 3 C 0.10 1.81 5.26 86.38 0.45 2.27 16 4 N -0.60 -14.72 2.46 -826.15 -2.03 -16.75 16 5 C 0.16 3.30 5.58 85.63 0.48 3.78 16 6 C -0.12 -2.67 5.39 -19.87 -0.11 -2.78 16 7 C -0.11 -3.17 9.70 22.27 0.22 -2.95 16 8 C -0.14 -3.54 9.70 22.27 0.22 -3.32 16 9 C -0.09 -1.86 5.88 -19.86 -0.12 -1.98 16 10 C -0.11 -1.62 10.01 71.24 0.71 -0.91 16 11 C -0.13 -2.23 9.70 22.27 0.22 -2.01 16 12 C -0.10 -1.68 7.56 22.27 0.17 -1.51 16 13 C 0.52 17.94 7.40 87.66 0.65 18.58 16 14 O -0.55 -23.06 13.44 -3.04 -0.04 -23.11 16 15 C 0.04 1.53 4.00 85.56 0.34 1.88 16 16 N -0.54 -25.90 4.49 -931.68 -4.18 -30.09 16 17 C 0.04 1.98 9.03 127.69 1.15 3.13 16 18 C 0.21 11.68 4.72 85.56 0.40 12.08 16 19 C -0.53 -31.37 8.46 25.60 0.22 -31.16 16 20 H 0.06 3.35 7.12 -2.91 -0.02 3.33 16 21 C 0.01 0.34 5.46 84.66 0.46 0.81 16 22 N -0.93 -56.39 13.29 21.45 0.28 -56.10 16 23 Si 0.97 45.70 29.54 68.60 2.03 47.73 16 24 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 26 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 27 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.08 1.33 5.27 -2.39 -0.01 1.32 16 31 H 0.03 0.87 7.24 -2.39 -0.02 0.85 16 32 H 0.08 1.44 6.43 -2.39 -0.02 1.43 16 33 H 0.11 1.17 7.89 -2.39 -0.02 1.15 16 34 H 0.12 1.56 7.83 -2.39 -0.02 1.54 16 35 H 0.07 1.80 7.36 -2.39 -0.02 1.78 16 36 H 0.10 3.30 7.61 -2.91 -0.02 3.28 16 37 H 0.12 2.79 8.06 -2.91 -0.02 2.76 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.06 0.95 8.09 -2.39 -0.02 0.93 16 40 H 0.08 0.91 8.09 -2.39 -0.02 0.89 16 41 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 42 H 0.15 1.65 7.72 -2.91 -0.02 1.62 16 43 H 0.07 2.26 7.37 -2.38 -0.02 2.24 16 44 H 0.10 3.53 7.00 -2.39 -0.02 3.51 16 45 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 46 H 0.05 2.60 6.76 -2.39 -0.02 2.58 16 47 H 0.07 3.14 5.88 -2.38 -0.01 3.13 16 48 H -0.03 -1.66 8.12 -2.39 -0.02 -1.68 16 49 H 0.01 0.50 7.93 -2.39 -0.02 0.48 16 50 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -74.01 397.40 3.32 -70.69 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.90 Total: 15.53 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: 6.37 Total: -7.90 kcal Atomic # 7 Polarization: -97.01 SS G_CDS: -5.93 Total: -102.93 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.04 Total: -23.11 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -74.01 3.32 -70.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078645773.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.794 kcal (2) G-P(sol) polarization free energy of solvation -74.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds